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tabula_sapiens_Testis

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Testis
Model card Files Community
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@@ -32,15 +32,15 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | spermatid | 419 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
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- | spermatocyte | 292 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.98 | 0.99 | 0.96 | 0.98 |
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- | male germ cell | 12 | 1.00 | 0.96 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.89 | 1.00 |
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- | peritubular myoid cell | 9 | 0.73 | 0.78 | 0.71 | 0.75 | 0.00 | 0.78 | 0.89 | 0.71 | 0.78 |
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- | spermatogonium | 4 | 0.89 | 0.89 | 0.89 | 1.00 | 0.00 | 0.73 | 0.89 | 0.67 | 0.89 |
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- | stromal cell | 5 | 0.83 | 0.50 | 0.83 | 0.59 | 0.00 | 0.77 | 0.83 | 0.83 | 0.77 |
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- | tissue-resident macrophage | 3 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | endothelial cell | 7 | 0.83 | 0.83 | 0.92 | 0.73 | 0.00 | 0.92 | 0.92 | 0.83 | 0.92 |
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- | Leydig cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -52,19 +52,19 @@ The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | spermatid | 3590 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | spermatocyte | 2778 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |
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- | male germ cell | 104 | 0.98 | 0.99 | 0.99 | 0.95 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | peritubular myoid cell | 58 | 0.75 | 0.84 | 0.87 | 0.65 | 0.00 | 0.96 | 0.97 | 0.99 | 0.93 |
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- | spermatogonium | 60 | 0.89 | 0.86 | 0.94 | 0.85 | 0.00 | 0.77 | 0.92 | 0.92 | 0.93 |
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- | stromal cell | 56 | 0.82 | 0.66 | 0.85 | 0.81 | 0.00 | 0.96 | 0.99 | 1.00 | 0.93 |
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- | tissue-resident macrophage | 51 | 0.91 | 0.95 | 0.96 | 0.87 | 0.00 | 0.99 | 1.00 | 0.99 | 0.98 |
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- | endothelial cell | 46 | 1.00 | 1.00 | 1.00 | 0.88 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | Leydig cell | 9 | 0.00 | 0.21 | 0.00 | 0.47 | 0.00 | 0.88 | 1.00 | 1.00 | 0.80 |
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- | CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | CD4-positive, alpha-beta T cell | 2 | 0.00 | 0.33 | 0.57 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |
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  | B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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  | monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | spermatid | 397 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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+ | spermatocyte | 305 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |
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+ | male germ cell | 11 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.96 | 1.00 |
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+ | peritubular myoid cell | 12 | 0.77 | 0.83 | 0.83 | 0.57 | 0.00 | 0.80 | 0.83 | 0.87 | 0.83 |
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+ | spermatogonium | 6 | 0.92 | 0.83 | 0.92 | 0.91 | 0.00 | 0.86 | 0.92 | 0.92 | 0.92 |
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+ | stromal cell | 5 | 0.71 | 0.50 | 0.62 | 0.46 | 0.00 | 0.71 | 0.71 | 0.77 | 0.71 |
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+ | tissue-resident macrophage | 7 | 1.00 | 1.00 | 1.00 | 0.67 | 0.00 | 1.00 | 1.00 | 0.92 | 1.00 |
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+ | endothelial cell | 7 | 0.83 | 0.83 | 0.92 | 0.25 | 0.00 | 0.92 | 0.92 | 0.83 | 0.92 |
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+ | Leydig cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | spermatid | 3612 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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+ | spermatocyte | 2765 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |
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+ | male germ cell | 105 | 0.98 | 0.98 | 0.99 | 0.94 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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+ | peritubular myoid cell | 55 | 0.78 | 0.79 | 0.86 | 0.64 | 0.00 | 0.91 | 0.98 | 0.98 | 0.92 |
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+ | spermatogonium | 58 | 0.89 | 0.86 | 0.92 | 0.85 | 0.00 | 0.84 | 0.93 | 0.90 | 0.94 |
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+ | stromal cell | 56 | 0.82 | 0.68 | 0.88 | 0.78 | 0.00 | 0.98 | 1.00 | 0.99 | 0.93 |
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+ | tissue-resident macrophage | 47 | 0.90 | 0.96 | 0.97 | 0.88 | 0.00 | 1.00 | 1.00 | 1.00 | 0.99 |
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+ | endothelial cell | 46 | 1.00 | 1.00 | 1.00 | 0.89 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
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+ | Leydig cell | 8 | 0.00 | 0.09 | 0.50 | 0.31 | 0.00 | 0.93 | 1.00 | 1.00 | 0.62 |
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+ | CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.80 |
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+ | CD4-positive, alpha-beta T cell | 2 | 0.00 | 0.00 | 0.50 | 0.67 | 0.00 | 0.50 | 1.00 | 1.00 | 0.80 |
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+ | mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |
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+ | macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
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  | B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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  | monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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