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@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
+faiss_index.faiss filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 8324 | 0.80 | 0.87 | 0.87 | 0.66 | 0.00 | 0.75 | 0.69 | 0.77 | 0.89 |\n| stromal cell of ovary | 3503 | 0.97 | 0.96 | 0.86 | 0.57 | 0.00 | 0.77 | 0.96 | 0.97 | 0.98 |\n| mesenchymal stem cell | 2264 | 0.93 | 0.91 | 0.87 | 0.33 | 0.00 | 0.53 | 0.88 | 0.90 | 0.96 |\n| smooth muscle cell | 1815 | 0.78 | 0.77 | 0.85 | 0.67 | 0.00 | 0.68 | 0.75 | 0.81 | 0.85 |\n| pericyte | 1122 | 0.73 | 0.75 | 0.81 | 0.62 | 0.00 | 0.58 | 0.64 | 0.73 | 0.80 |\n| skeletal muscle satellite stem cell | 667 | 0.96 | 0.96 | 0.96 | 0.73 | 0.00 | 0.78 | 0.93 | 0.96 | 0.97 |\n| blood vessel smooth muscle cell | 575 | 0.78 | 0.79 | 0.91 | 0.66 | 0.00 | 0.71 | 0.85 | 0.87 | 0.92 |\n| regular atrial cardiac myocyte | 619 | 0.85 | 0.82 | 0.65 | 0.31 | 0.00 | 0.66 | 0.94 | 0.97 | 0.96 |\n| fibroblast of breast | 541 | 0.98 | 0.31 | 0.62 | 0.04 | 0.00 | 0.00 | 0.90 | 0.86 | 0.88 |\n| vascular associated smooth muscle cell | 472 | 0.73 | 0.36 | 0.58 | 0.20 | 0.00 | 0.30 | 0.63 | 0.71 | 0.74 |\n| myofibroblast cell | 416 | 0.56 | 0.76 | 0.79 | 0.30 | 0.00 | 0.54 | 0.57 | 0.59 | 0.78 |\n| thymic fibroblast type 2 | 404 | 0.65 | 0.14 | 0.42 | 0.07 | 0.00 | 0.16 | 0.64 | 0.67 | 0.52 |\n| mesenchymal stem cell of adipose tissue | 364 | 0.35 | 0.08 | 0.64 | 0.24 | 0.00 | 0.31 | 0.35 | 0.40 | 0.52 |\n| stromal cell | 297 | 0.83 | 0.58 | 0.57 | 0.08 | 0.00 | 0.46 | 0.73 | 0.81 | 0.91 |\n| thymic fibroblast type 1 | 334 | 0.60 | 0.39 | 0.59 | 0.08 | 0.00 | 0.05 | 0.59 | 0.62 | 0.66 |\n| ventricular cardiac muscle cell | 244 | 0.49 | 0.22 | 0.54 | 0.46 | 0.00 | 0.66 | 0.86 | 0.92 | 0.90 |\n| fibroblast of cardiac tissue | 194 | 0.96 | 0.94 | 0.89 | 0.01 | 0.00 | 0.40 | 0.69 | 0.83 | 0.98 |\n| alveolar adventitial fibroblast | 122 | 0.84 | 0.81 | 0.61 | 0.10 | 0.00 | 0.03 | 0.63 | 0.78 | 0.84 |\n| adventitial cell | 107 | 0.26 | 0.07 | 0.27 | 0.05 | 0.00 | 0.14 | 0.34 | 0.40 | 0.41 |\n| theca cell | 119 | 0.77 | 0.80 | 0.90 | 0.61 | 0.00 | 0.76 | 0.71 | 0.72 | 0.88 |\n| keratocyte | 90 | 0.53 | 0.58 | 0.58 | 0.02 | 0.00 | 0.14 | 0.40 | 0.51 | 0.66 |\n| myometrial cell | 102 | 0.75 | 0.41 | 0.85 | 0.18 | 0.00 | 0.51 | 0.58 | 0.71 | 0.86 |\n| mural cell | 58 | 0.66 | 0.81 | 0.73 | 0.19 | 0.00 | 0.33 | 0.48 | 0.53 | 0.88 |\n| Mueller cell | 50 | 0.99 | 1.00 | 0.95 | 0.74 | 0.00 | 0.72 | 0.98 | 0.94 | 0.97 |\n| fast muscle cell | 53 | 0.73 | 0.73 | 0.86 | 0.75 | 0.00 | 0.79 | 0.73 | 0.89 | 0.89 |\n| pancreatic stellate cell | 38 | 0.64 | 0.00 | 0.46 | 0.11 | 0.00 | 0.00 | 0.56 | 0.72 | 0.74 |\n| tendon cell | 40 | 0.30 | 0.65 | 0.53 | 0.08 | 0.00 | 0.35 | 0.28 | 0.37 | 0.73 |\n| muscle cell | 35 | 0.73 | 0.11 | 0.79 | 0.79 | 0.00 | 0.80 | 0.89 | 0.96 | 0.97 |\n| Schwann cell | 35 | 0.85 | 0.81 | 0.87 | 0.76 | 0.00 | 0.63 | 0.61 | 0.68 | 0.86 |\n| melanocyte | 16 | 0.76 | 0.67 | 0.87 | 0.38 | 0.00 | 0.36 | 0.59 | 0.71 | 0.89 |\n| hepatic stellate cell | 29 | 0.78 | 0.00 | 0.73 | 0.33 | 0.00 | 0.13 | 0.62 | 0.83 | 0.85 |\n| bronchial smooth muscle cell | 12 | 0.24 | 0.40 | 0.16 | 0.00 | 0.00 | 0.11 | 0.15 | 0.26 | 0.32 |\n| tongue muscle cell | 15 | 0.57 | 0.70 | 0.64 | 0.00 | 0.00 | 0.18 | 0.40 | 0.46 | 0.70 |\n| slow muscle cell | 14 | 0.72 | 0.70 | 0.73 | 0.50 | 0.00 | 0.59 | 0.76 | 0.96 | 0.93 |\n| connective tissue cell | 10 | 0.00 | 0.00 | 0.17 | 0.09 | 0.00 | 0.12 | 0.16 | 0.22 | 0.44 |\n| adipocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| glial cell | 1 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 0.17 | 0.20 | 0.00 | 0.50 |\n| Leydig cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 74863 | 0.80 | 0.85 | 0.91 | 0.75 | 0.00 | 0.88 | 0.69 | 0.77 | 0.92 |\n| stromal cell of ovary | 31500 | 0.97 | 0.95 | 0.86 | 0.68 | 0.00 | 0.97 | 0.96 | 0.97 | 0.99 |\n| mesenchymal stem cell | 21232 | 0.93 | 0.90 | 0.91 | 0.49 | 0.00 | 0.96 | 0.88 | 0.90 | 0.97 |\n| smooth muscle cell | 16590 | 0.78 | 0.74 | 0.90 | 0.76 | 0.00 | 0.86 | 0.75 | 0.81 | 0.89 |\n| pericyte | 9756 | 0.71 | 0.71 | 0.89 | 0.73 | 0.00 | 0.76 | 0.67 | 0.75 | 0.83 |\n| skeletal muscle satellite stem cell | 5501 | 0.96 | 0.96 | 0.98 | 0.82 | 0.00 | 0.94 | 0.93 | 0.95 | 0.97 |\n| blood vessel smooth muscle cell | 5412 | 0.79 | 0.77 | 0.95 | 0.75 | 0.00 | 0.94 | 0.86 | 0.88 | 0.94 |\n| regular atrial cardiac myocyte | 5193 | 0.82 | 0.75 | 0.87 | 0.74 | 0.00 | 0.99 | 0.94 | 0.97 | 0.97 |\n| fibroblast of breast | 4729 | 0.98 | 0.22 | 0.68 | 0.26 | 0.00 | 0.97 | 0.89 | 0.86 | 0.99 |\n| vascular associated smooth muscle cell | 4546 | 0.73 | 0.27 | 0.73 | 0.48 | 0.00 | 0.78 | 0.67 | 0.73 | 0.82 |\n| myofibroblast cell | 4019 | 0.57 | 0.74 | 0.88 | 0.56 | 0.00 | 0.74 | 0.58 | 0.62 | 0.83 |\n| thymic fibroblast type 2 | 3801 | 0.66 | 0.12 | 0.61 | 0.24 | 0.00 | 0.85 | 0.67 | 0.67 | 0.89 |\n| mesenchymal stem cell of adipose tissue | 3411 | 0.36 | 0.04 | 0.73 | 0.46 | 0.00 | 0.51 | 0.35 | 0.43 | 0.55 |\n| stromal cell | 3141 | 0.84 | 0.51 | 0.66 | 0.32 | 0.00 | 0.91 | 0.78 | 0.84 | 0.94 |\n| thymic fibroblast type 1 | 2935 | 0.58 | 0.27 | 0.75 | 0.25 | 0.00 | 0.82 | 0.64 | 0.63 | 0.86 |\n| ventricular cardiac muscle cell | 2354 | 0.44 | 0.22 | 0.76 | 0.74 | 0.00 | 0.97 | 0.88 | 0.94 | 0.93 |\n| fibroblast of cardiac tissue | 1750 | 0.95 | 0.93 | 0.97 | 0.35 | 0.00 | 0.76 | 0.68 | 0.79 | 0.98 |\n| alveolar adventitial fibroblast | 989 | 0.83 | 0.79 | 0.64 | 0.24 | 0.00 | 0.91 | 0.65 | 0.80 | 0.92 |\n| adventitial cell | 937 | 0.27 | 0.03 | 0.51 | 0.25 | 0.00 | 0.67 | 0.34 | 0.41 | 0.65 |\n| theca cell | 919 | 0.74 | 0.74 | 0.90 | 0.79 | 0.00 | 0.64 | 0.67 | 0.71 | 0.88 |\n| keratocyte | 889 | 0.56 | 0.47 | 0.60 | 0.12 | 0.00 | 0.59 | 0.42 | 0.51 | 0.68 |\n| myometrial cell | 815 | 0.70 | 0.16 | 0.87 | 0.46 | 0.00 | 0.75 | 0.60 | 0.70 | 0.86 |\n| mural cell | 557 | 0.63 | 0.74 | 0.82 | 0.34 | 0.00 | 0.86 | 0.50 | 0.57 | 0.94 |\n| Mueller cell | 447 | 0.99 | 0.96 | 0.94 | 0.86 | 0.00 | 0.81 | 0.99 | 0.95 | 0.98 |\n| fast muscle cell | 442 | 0.75 | 0.67 | 0.88 | 0.84 | 0.00 | 0.86 | 0.77 | 0.93 | 0.93 |\n| pancreatic stellate cell | 394 | 0.59 | 0.01 | 0.79 | 0.26 | 0.00 | 0.67 | 0.54 | 0.75 | 0.79 |\n| tendon cell | 380 | 0.31 | 0.64 | 0.80 | 0.36 | 0.00 | 0.51 | 0.33 | 0.40 | 0.74 |\n| muscle cell | 371 | 0.80 | 0.13 | 0.87 | 0.89 | 0.00 | 0.91 | 0.90 | 0.99 | 0.99 |\n| Schwann cell | 280 | 0.73 | 0.74 | 0.87 | 0.69 | 0.00 | 0.66 | 0.60 | 0.71 | 0.87 |\n| melanocyte | 216 | 0.78 | 0.72 | 0.94 | 0.63 | 0.00 | 0.55 | 0.69 | 0.81 | 0.96 |\n| hepatic stellate cell | 193 | 0.66 | 0.00 | 0.85 | 0.41 | 0.00 | 0.74 | 0.57 | 0.77 | 0.85 |\n| bronchial smooth muscle cell | 207 | 0.43 | 0.40 | 0.60 | 0.27 | 0.00 | 0.46 | 0.40 | 0.59 | 0.71 |\n| tongue muscle cell | 187 | 0.49 | 0.60 | 0.81 | 0.18 | 0.00 | 0.82 | 0.47 | 0.61 | 0.90 |\n| slow muscle cell | 160 | 0.77 | 0.76 | 0.82 | 0.69 | 0.00 | 0.75 | 0.80 | 0.92 | 0.96 |\n| connective tissue cell | 142 | 0.00 | 0.00 | 0.40 | 0.35 | 0.00 | 0.50 | 0.28 | 0.32 | 0.82 |\n| adipocyte | 34 | 0.00 | 0.13 | 0.96 | 0.77 | 0.00 | 0.42 | 0.99 | 0.80 | 0.96 |\n| glial cell | 19 | 0.00 | 0.00 | 0.71 | 0.52 | 0.00 | 0.26 | 0.34 | 0.18 | 0.75 |\n| Leydig cell | 9 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 | 0.16 | 0.67 | 0.33 | 0.67 |\n| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.67 | 0.80 | 0.00 |"
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