Hugging Face's logo

popV
/
tabula_sapiens_Prostate

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Prostate
Model card Files Community
canergen commited on
Commit
f090b45
·
verified ·
1 Parent(s): f10ce39

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +30 -29
README.md CHANGED
@@ -5,7 +5,8 @@ tags:
5
  - biology
6
  - genomics
7
  - single-cell
8
- - anndata_version:0.11.1
 
9
  - popV
10
  - 'tissue: Prostate'
11
  ---
@@ -31,39 +32,39 @@ computed on a 10% random subset of the data that was not used for training.
31
 
32
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
33
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
34
- | luminal cell of prostate epithelium | 1058 | 0.93 | 0.96 | 0.96 | 0.95 | 0.00 | 0.91 | 0.94 | 0.94 | 0.95 |
35
- | basal cell of prostate epithelium | 345 | 0.82 | 0.88 | 0.89 | 0.85 | 0.00 | 0.82 | 0.86 | 0.85 | 0.88 |
36
- | CD8-positive, alpha-beta T cell | 252 | 0.94 | 0.88 | 0.95 | 0.88 | 0.00 | 0.94 | 0.92 | 0.93 | 0.94 |
37
- | endothelial cell | 120 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.98 | 0.97 | 0.98 |
38
- | macrophage | 94 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.96 | 0.98 |
39
- | fibroblast | 58 | 0.97 | 0.96 | 0.98 | 0.91 | 0.00 | 0.93 | 0.96 | 0.97 | 0.98 |
40
- | mature NK T cell | 52 | 0.92 | 0.11 | 0.92 | 0.32 | 0.00 | 0.95 | 0.92 | 0.91 | 0.92 |
41
- | smooth muscle cell | 52 | 0.95 | 0.96 | 0.94 | 0.88 | 0.00 | 0.87 | 0.94 | 0.90 | 0.95 |
42
- | neutrophil | 23 | 0.98 | 0.98 | 1.00 | 1.00 | 0.00 | 0.96 | 0.98 | 1.00 | 0.98 |
43
- | erythrocyte | 22 | 0.86 | 0.88 | 0.95 | 0.95 | 0.00 | 0.76 | 0.98 | 0.98 | 0.98 |
44
- | CD4-positive, alpha-beta T cell | 13 | 0.11 | 0.00 | 0.13 | 0.12 | 0.00 | 0.40 | 0.43 | 0.52 | 0.24 |
45
- | B cell | 9 | 0.82 | 0.82 | 0.82 | 0.82 | 0.00 | 0.95 | 0.89 | 0.84 | 0.89 |
46
- | mast cell | 4 | 1.00 | 0.89 | 1.00 | 0.57 | 0.00 | 0.43 | 1.00 | 1.00 | 1.00 |
47
- | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.00 |
48
 
49
  The train accuracies are computed on the training data.
50
 
51
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
52
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
53
- | luminal cell of prostate epithelium | 9594 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.93 | 0.95 | 0.95 | 0.97 |
54
- | basal cell of prostate epithelium | 3150 | 0.84 | 0.88 | 0.94 | 0.92 | 0.00 | 0.85 | 0.88 | 0.88 | 0.91 |
55
- | CD8-positive, alpha-beta T cell | 2264 | 0.95 | 0.88 | 0.96 | 0.91 | 0.00 | 0.96 | 0.94 | 0.94 | 0.96 |
56
- | endothelial cell | 1085 | 0.97 | 0.94 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.97 | 0.98 |
57
- | macrophage | 928 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
58
- | fibroblast | 461 | 0.96 | 0.96 | 0.99 | 0.95 | 0.00 | 0.90 | 0.98 | 0.98 | 0.99 |
59
- | mature NK T cell | 435 | 0.91 | 0.18 | 0.92 | 0.56 | 0.00 | 0.91 | 0.91 | 0.92 | 0.94 |
60
- | smooth muscle cell | 425 | 0.95 | 0.91 | 0.96 | 0.91 | 0.00 | 0.88 | 0.97 | 0.96 | 0.98 |
61
- | neutrophil | 238 | 0.99 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |
62
- | erythrocyte | 117 | 0.87 | 0.82 | 0.97 | 0.96 | 0.00 | 0.62 | 0.99 | 0.99 | 0.98 |
63
- | CD4-positive, alpha-beta T cell | 103 | 0.28 | 0.00 | 0.16 | 0.16 | 0.00 | 0.66 | 0.63 | 0.65 | 0.46 |
64
- | B cell | 92 | 0.83 | 0.70 | 0.84 | 0.90 | 0.00 | 0.94 | 0.97 | 0.96 | 0.96 |
65
- | mast cell | 22 | 0.96 | 0.70 | 0.95 | 0.87 | 0.00 | 0.58 | 0.98 | 0.98 | 0.98 |
66
- | T cell | 13 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.45 | 0.93 | 0.67 | 0.88 |
67
 
68
  </details>
69
 
 
5
  - biology
6
  - genomics
7
  - single-cell
8
+ - anndata_version:0.11.3
9
+ - python_version:3.11.11
10
  - popV
11
  - 'tissue: Prostate'
12
  ---
 
32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | luminal cell of prostate epithelium | 1059 | 0.95 | 0.96 | 0.97 | 0.94 | 0.00 | 0.91 | 0.95 | 0.94 | 0.96 |
36
+ | basal cell of prostate epithelium | 349 | 0.86 | 0.88 | 0.90 | 0.83 | 0.00 | 0.81 | 0.88 | 0.85 | 0.90 |
37
+ | CD8-positive, alpha-beta T cell | 259 | 0.94 | 0.89 | 0.95 | 0.87 | 0.00 | 0.94 | 0.92 | 0.94 | 0.95 |
38
+ | endothelial cell | 123 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.97 | 0.98 | 0.98 |
39
+ | macrophage | 89 | 0.96 | 0.98 | 0.98 | 0.97 | 0.00 | 0.98 | 0.98 | 0.95 | 0.98 |
40
+ | fibroblast | 58 | 0.96 | 0.94 | 0.97 | 0.90 | 0.00 | 0.98 | 0.95 | 0.94 | 0.97 |
41
+ | mature NK T cell | 50 | 0.91 | 0.18 | 0.91 | 0.24 | 0.00 | 0.94 | 0.91 | 0.92 | 0.92 |
42
+ | smooth muscle cell | 48 | 0.96 | 0.95 | 0.92 | 0.82 | 0.00 | 0.79 | 0.95 | 0.90 | 0.93 |
43
+ | neutrophil | 22 | 0.98 | 1.00 | 1.00 | 0.91 | 0.00 | 0.98 | 0.96 | 0.96 | 0.96 |
44
+ | erythrocyte | 20 | 0.90 | 0.88 | 0.93 | 0.77 | 0.00 | 0.97 | 0.97 | 0.93 | 0.97 |
45
+ | CD4-positive, alpha-beta T cell | 13 | 0.26 | 0.00 | 0.12 | 0.00 | 0.00 | 0.40 | 0.50 | 0.57 | 0.21 |
46
+ | B cell | 8 | 0.80 | 0.80 | 0.80 | 0.75 | 0.00 | 0.89 | 0.88 | 0.86 | 0.80 |
47
+ | mast cell | 4 | 1.00 | 0.75 | 1.00 | 0.33 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |
48
+ | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 |
49
 
50
  The train accuracies are computed on the training data.
51
 
52
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
53
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
54
+ | luminal cell of prostate epithelium | 9593 | 0.95 | 0.96 | 0.98 | 0.96 | 0.00 | 0.93 | 0.95 | 0.95 | 0.97 |
55
+ | basal cell of prostate epithelium | 3146 | 0.86 | 0.88 | 0.94 | 0.90 | 0.00 | 0.84 | 0.89 | 0.88 | 0.91 |
56
+ | CD8-positive, alpha-beta T cell | 2257 | 0.94 | 0.88 | 0.96 | 0.91 | 0.00 | 0.96 | 0.95 | 0.95 | 0.96 |
57
+ | endothelial cell | 1082 | 0.98 | 0.94 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |
58
+ | macrophage | 933 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 1.00 |
59
+ | fibroblast | 461 | 0.96 | 0.95 | 0.98 | 0.87 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |
60
+ | mature NK T cell | 437 | 0.91 | 0.16 | 0.92 | 0.53 | 0.00 | 0.94 | 0.92 | 0.93 | 0.95 |
61
+ | smooth muscle cell | 429 | 0.96 | 0.90 | 0.97 | 0.84 | 0.00 | 0.89 | 0.97 | 0.97 | 0.98 |
62
+ | neutrophil | 239 | 0.99 | 0.98 | 0.99 | 0.97 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
63
+ | erythrocyte | 119 | 0.93 | 0.87 | 0.97 | 0.88 | 0.00 | 0.93 | 1.00 | 1.00 | 0.99 |
64
+ | CD4-positive, alpha-beta T cell | 103 | 0.28 | 0.00 | 0.25 | 0.07 | 0.00 | 0.68 | 0.66 | 0.69 | 0.45 |
65
+ | B cell | 93 | 0.83 | 0.82 | 0.83 | 0.82 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |
66
+ | mast cell | 22 | 0.98 | 0.67 | 0.98 | 0.46 | 0.00 | 0.81 | 1.00 | 0.98 | 0.98 |
67
+ | T cell | 13 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 | 0.80 | 1.00 | 0.74 | 0.88 |
68
 
69
  </details>
70