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@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
+faiss_index.faiss filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| conjunctival epithelial cell | 1126 | 0.96 | 0.94 | 0.96 | 0.97 | 0.00 | 0.88 | 0.96 | 0.96 | 0.97 |\n| corneal epithelial cell | 389 | 0.95 | 0.84 | 0.95 | 0.95 | 0.00 | 0.95 | 0.95 | 0.93 | 0.96 |\n| B cell | 438 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |\n| retinal blood vessel endothelial cell | 199 | 0.97 | 0.96 | 0.97 | 0.97 | 0.00 | 0.94 | 0.98 | 0.98 | 0.98 |\n| CD4-positive, alpha-beta T cell | 175 | 0.91 | 0.92 | 0.91 | 0.81 | 0.00 | 0.84 | 0.90 | 0.91 | 0.93 |\n| fibroblast | 164 | 0.82 | 0.75 | 0.76 | 0.72 | 0.00 | 0.65 | 0.80 | 0.81 | 0.84 |\n| eye photoreceptor cell | 142 | 0.94 | 0.96 | 0.96 | 0.95 | 0.00 | 0.95 | 0.95 | 0.96 | 0.96 |\n| plasma cell | 132 | 0.95 | 0.92 | 0.95 | 0.97 | 0.00 | 0.93 | 0.98 | 0.95 | 0.96 |\n| acinar cell | 135 | 0.91 | 0.93 | 0.97 | 0.96 | 0.00 | 0.93 | 0.90 | 0.94 | 0.94 |\n| keratocyte | 81 | 0.63 | 0.61 | 0.63 | 0.58 | 0.00 | 0.64 | 0.74 | 0.75 | 0.75 |\n| CD8-positive, alpha-beta T cell | 83 | 0.78 | 0.81 | 0.80 | 0.58 | 0.00 | 0.75 | 0.82 | 0.82 | 0.82 |\n| myeloid leukocyte | 80 | 0.79 | 0.82 | 0.80 | 0.75 | 0.00 | 0.69 | 0.81 | 0.80 | 0.84 |\n| Mueller cell | 54 | 0.81 | 0.85 | 0.83 | 0.83 | 0.00 | 0.89 | 0.85 | 0.86 | 0.87 |\n| smooth muscle cell | 47 | 0.94 | 0.97 | 0.98 | 0.92 | 0.00 | 0.90 | 0.96 | 0.93 | 0.96 |\n| microglial cell | 33 | 0.73 | 0.74 | 0.71 | 0.60 | 0.00 | 0.64 | 0.70 | 0.67 | 0.76 |\n| Schwann cell | 32 | 0.90 | 0.84 | 0.87 | 0.84 | 0.00 | 0.79 | 0.85 | 0.84 | 0.84 |\n| macrophage | 23 | 0.00 | 0.40 | 0.47 | 0.43 | 0.00 | 0.53 | 0.68 | 0.65 | 0.58 |\n| erythrocyte | 15 | 0.97 | 0.97 | 0.97 | 1.00 | 0.00 | 0.94 | 1.00 | 0.91 | 0.97 |\n| muscle cell | 12 | 0.92 | 0.91 | 0.96 | 0.75 | 0.00 | 0.83 | 0.96 | 1.00 | 1.00 |\n| monocyte | 10 | 0.61 | 0.73 | 0.64 | 0.27 | 0.00 | 0.63 | 0.13 | 0.60 | 0.67 |\n| mature NK T cell | 5 | 0.00 | 0.33 | 0.57 | 0.33 | 0.00 | 0.47 | 0.80 | 0.67 | 0.75 |\n| retinal pigment epithelial cell | 9 | 0.94 | 0.94 | 0.94 | 0.88 | 0.00 | 0.82 | 1.00 | 0.88 | 0.94 |\n| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.15 | 0.00 | 0.00 |\n| retinal bipolar neuron | 3 | 0.50 | 0.40 | 0.40 | 0.33 | 0.00 | 0.57 | 0.40 | 0.40 | 0.33 |\n| natural killer cell | 5 | 0.00 | 0.57 | 0.50 | 0.29 | 0.00 | 0.57 | 0.57 | 0.29 | 0.57 |\n| neutrophil | 5 | 0.91 | 0.77 | 0.89 | 0.89 | 0.00 | 0.83 | 0.89 | 0.67 | 1.00 |\n| adipocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 3 | 0.60 | 0.67 | 0.80 | 0.57 | 0.00 | 0.67 | 0.86 | 1.00 | 0.86 |\n| intermediate monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.00 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.00 |\n| radial glial cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 | 0.00 | 0.00 | 0.00 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| retina horizontal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| stromal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| erythroid lineage cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| retinal ganglion cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| conjunctival epithelial cell | 9959 | 0.96 | 0.92 | 0.98 | 0.97 | 0.00 | 0.90 | 0.97 | 0.96 | 0.98 |\n| corneal epithelial cell | 3798 | 0.94 | 0.77 | 0.96 | 0.96 | 0.00 | 0.94 | 0.96 | 0.94 | 0.96 |\n| B cell | 3715 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| retinal blood vessel endothelial cell | 1892 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |\n| CD4-positive, alpha-beta T cell | 1438 | 0.86 | 0.86 | 0.90 | 0.85 | 0.00 | 0.88 | 0.93 | 0.94 | 0.93 |\n| fibroblast | 1424 | 0.80 | 0.70 | 0.88 | 0.81 | 0.00 | 0.78 | 0.88 | 0.89 | 0.90 |\n| eye photoreceptor cell | 1392 | 0.94 | 0.94 | 0.97 | 0.97 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| plasma cell | 1215 | 0.95 | 0.91 | 0.98 | 0.95 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |\n| acinar cell | 1210 | 0.90 | 0.90 | 0.98 | 0.97 | 0.00 | 0.92 | 0.93 | 0.94 | 0.95 |\n| keratocyte | 905 | 0.73 | 0.63 | 0.85 | 0.76 | 0.00 | 0.81 | 0.87 | 0.88 | 0.89 |\n| CD8-positive, alpha-beta T cell | 853 | 0.79 | 0.79 | 0.84 | 0.75 | 0.00 | 0.85 | 0.90 | 0.91 | 0.90 |\n| myeloid leukocyte | 568 | 0.76 | 0.74 | 0.83 | 0.84 | 0.00 | 0.88 | 0.97 | 0.97 | 0.94 |\n| Mueller cell | 451 | 0.80 | 0.78 | 0.88 | 0.86 | 0.00 | 0.90 | 0.94 | 0.95 | 0.92 |\n| smooth muscle cell | 408 | 0.93 | 0.93 | 0.97 | 0.95 | 0.00 | 0.91 | 0.97 | 0.97 | 0.97 |\n| microglial cell | 375 | 0.73 | 0.74 | 0.81 | 0.75 | 0.00 | 0.86 | 0.99 | 0.98 | 0.93 |\n| Schwann cell | 251 | 0.87 | 0.85 | 0.89 | 0.91 | 0.00 | 0.82 | 0.94 | 0.94 | 0.92 |\n| macrophage | 131 | 0.00 | 0.20 | 0.62 | 0.64 | 0.00 | 0.79 | 0.98 | 0.99 | 0.94 |\n| erythrocyte | 133 | 0.94 | 0.92 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| muscle cell | 130 | 0.78 | 0.63 | 0.94 | 0.89 | 0.00 | 0.89 | 0.96 | 0.96 | 0.97 |\n| monocyte | 76 | 0.40 | 0.49 | 0.62 | 0.58 | 0.00 | 0.89 | 0.97 | 1.00 | 0.90 |\n| mature NK T cell | 67 | 0.00 | 0.06 | 0.39 | 0.08 | 0.00 | 0.82 | 0.94 | 0.96 | 0.64 |\n| retinal pigment epithelial cell | 58 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.94 | 1.00 | 1.00 | 0.98 |\n| T cell | 60 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.54 | 0.83 | 0.88 | 0.67 |\n| retinal bipolar neuron | 58 | 0.86 | 0.84 | 0.90 | 0.80 | 0.00 | 0.83 | 0.99 | 0.95 | 0.92 |\n| natural killer cell | 49 | 0.00 | 0.40 | 0.61 | 0.52 | 0.00 | 0.79 | 0.91 | 0.91 | 0.91 |\n| neutrophil | 46 | 0.87 | 0.72 | 0.85 | 0.91 | 0.00 | 0.68 | 1.00 | 0.97 | 0.98 |\n| adipocyte | 38 | 0.00 | 0.00 | 0.79 | 0.53 | 0.00 | 0.48 | 0.83 | 0.85 | 0.86 |\n| mast cell | 33 | 0.70 | 0.73 | 0.79 | 0.72 | 0.00 | 0.80 | 1.00 | 0.96 | 0.94 |\n| intermediate monocyte | 28 | 0.00 | 0.00 | 0.50 | 0.36 | 0.00 | 0.45 | 1.00 | 1.00 | 0.86 |\n| myeloid dendritic cell | 27 | 0.00 | 0.29 | 0.62 | 0.33 | 0.00 | 0.56 | 0.90 | 0.93 | 0.86 |\n| classical monocyte | 15 | 0.00 | 0.00 | 0.22 | 0.32 | 0.00 | 0.39 | 1.00 | 1.00 | 0.89 |\n| radial glial cell | 11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 0.58 | 0.63 | 0.95 |\n| endothelial cell | 13 | 0.00 | 0.00 | 0.21 | 0.00 | 0.00 | 0.16 | 0.90 | 0.84 | 0.63 |\n| basophil | 5 | 0.00 | 0.00 | 0.44 | 0.29 | 0.00 | 0.62 | 1.00 | 1.00 | 0.75 |\n| retina horizontal cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 1.00 | 1.00 | 1.00 |\n| stromal cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 0.67 | 0.80 |\n| erythroid lineage cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 0.67 |\n| non-classical monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 0.67 |\n| retinal ganglion cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.25 | 1.00 | 1.00 | 0.00 |"
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