popV
/

tabula_sapiens_Endothelium

@@ -7,7 +7,7 @@ tags:
 - single-cell
 - anndata_version:0.11.1
 - popV
-- 'tissue: Endothelium'
 ---
 Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models
@@ -29,35 +29,35 @@ Not provided by uploader.
 We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are
 computed on a 10% random subset of the data that was not used for training.
-| Cell Type | N cells |  onclass | Consensus Prediction |
-| --- | --- | --- | --- |
-| endothelial cell | 3130 | 0.00 | 0.00 |
-| capillary endothelial cell | 1568 | 0.00 | 0.00 |
-| cardiac endothelial cell | 1057 | 0.00 | 0.00 |
-| vein endothelial cell | 454 | 0.00 | 0.00 |
-| endothelial cell of artery | 340 | 0.00 | 0.00 |
-| endothelial cell of lymphatic vessel | 258 | 0.00 | 0.00 |
-| retinal blood vessel endothelial cell | 175 | 0.00 | 0.00 |
-| endothelial cell of vascular tree | 69 | 0.00 | 0.00 |
-| colon endothelial cell | 23 | 0.00 | 0.00 |
-| endothelial cell of arteriole | 9 | 0.00 | 0.00 |
-| endothelial cell of venule | 0 | 0.00 | 0.00 |
 The train accuracies are computed on the training data.
-| Cell Type | N cells |  onclass | Consensus Prediction |
-| --- | --- | --- | --- |
-| endothelial cell | 30340 | 0.00 | 0.00 |
-| capillary endothelial cell | 13720 | 0.00 | 0.00 |
-| cardiac endothelial cell | 9023 | 0.00 | 0.00 |
-| vein endothelial cell | 4234 | 0.00 | 0.00 |
-| endothelial cell of artery | 3125 | 0.00 | 0.00 |
-| endothelial cell of lymphatic vessel | 2166 | 0.00 | 0.00 |
-| retinal blood vessel endothelial cell | 1881 | 0.00 | 0.00 |
-| endothelial cell of vascular tree | 800 | 0.00 | 0.00 |
-| colon endothelial cell | 297 | 0.00 | 0.00 |
-| endothelial cell of arteriole | 105 | 0.00 | 0.00 |
-| endothelial cell of venule | 44 | 0.00 | 0.00 |
 </details>

 - single-cell
 - anndata_version:0.11.1
 - popV
+- 'tissue: diverse'
 ---
 Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models
 We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are
 computed on a 10% random subset of the data that was not used for training.
+| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
+| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| endothelial cell | 3243 | 0.76 | 0.86 | 0.73 | 0.65 | 0.00 | 0.49 | 0.71 | 0.78 | 0.84 |
+| capillary endothelial cell | 1508 | 0.75 | 0.82 | 0.57 | 0.53 | 0.00 | 0.56 | 0.70 | 0.77 | 0.80 |
+| cardiac endothelial cell | 962 | 0.97 | 0.97 | 0.67 | 0.51 | 0.00 | 0.00 | 0.94 | 0.96 | 0.97 |
+| vein endothelial cell | 453 | 0.50 | 0.47 | 0.29 | 0.13 | 0.00 | 0.30 | 0.45 | 0.52 | 0.55 |
+| endothelial cell of artery | 363 | 0.63 | 0.71 | 0.45 | 0.24 | 0.00 | 0.56 | 0.56 | 0.65 | 0.70 |
+| endothelial cell of lymphatic vessel | 253 | 0.69 | 0.75 | 0.56 | 0.53 | 0.00 | 0.62 | 0.68 | 0.72 | 0.75 |
+| retinal blood vessel endothelial cell | 199 | 0.57 | 0.24 | 0.21 | 0.07 | 0.00 | 0.07 | 0.55 | 0.65 | 0.52 |
+| endothelial cell of vascular tree | 90 | 0.36 | 0.72 | 0.21 | 0.40 | 0.00 | 0.04 | 0.50 | 0.66 | 0.74 |
+| colon endothelial cell | 23 | 0.41 | 0.20 | 0.39 | 0.07 | 0.00 | 0.00 | 0.26 | 0.30 | 0.52 |
+| endothelial cell of arteriole | 8 | 0.00 | 0.18 | 0.46 | 0.00 | 0.00 | 0.00 | 0.19 | 0.42 | 0.67 |
+| endothelial cell of venule | 4 | 0.00 | 0.40 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 0.33 | 0.00 |
 The train accuracies are computed on the training data.
+| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
+| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| endothelial cell | 30249 | 0.74 | 0.83 | 0.78 | 0.75 | 0.00 | 0.89 | 0.70 | 0.77 | 0.90 |
+| capillary endothelial cell | 13781 | 0.75 | 0.78 | 0.66 | 0.66 | 0.00 | 0.84 | 0.71 | 0.77 | 0.85 |
+| cardiac endothelial cell | 9121 | 0.97 | 0.96 | 0.67 | 0.61 | 0.00 | 0.98 | 0.95 | 0.95 | 0.98 |
+| vein endothelial cell | 4240 | 0.49 | 0.41 | 0.50 | 0.35 | 0.00 | 0.66 | 0.51 | 0.54 | 0.68 |
+| endothelial cell of artery | 3104 | 0.64 | 0.69 | 0.55 | 0.45 | 0.00 | 0.70 | 0.59 | 0.67 | 0.76 |
+| endothelial cell of lymphatic vessel | 2174 | 0.64 | 0.67 | 0.62 | 0.66 | 0.00 | 0.78 | 0.64 | 0.69 | 0.75 |
+| retinal blood vessel endothelial cell | 1867 | 0.50 | 0.15 | 0.29 | 0.21 | 0.00 | 0.96 | 0.58 | 0.66 | 0.82 |
+| endothelial cell of vascular tree | 780 | 0.36 | 0.63 | 0.18 | 0.59 | 0.00 | 0.72 | 0.48 | 0.64 | 0.78 |
+| colon endothelial cell | 299 | 0.42 | 0.24 | 0.41 | 0.15 | 0.00 | 0.96 | 0.38 | 0.46 | 0.84 |
+| endothelial cell of arteriole | 106 | 0.00 | 0.31 | 0.27 | 0.02 | 0.00 | 0.97 | 0.24 | 0.55 | 0.92 |
+| endothelial cell of venule | 38 | 0.00 | 0.00 | 0.14 | 0.10 | 0.00 | 0.58 | 0.24 | 0.70 | 0.71 |
 </details>