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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 3305 | 0.73 | 0.87 | 0.81 | 0.64 | 0.00 | 0.58 | 0.72 | 0.78 | 0.85 |\n| capillary endothelial cell | 1483 | 0.75 | 0.82 | 0.74 | 0.50 | 0.00 | 0.57 | 0.70 | 0.78 | 0.81 |\n| cardiac endothelial cell | 965 | 0.96 | 0.98 | 0.85 | 0.43 | 0.00 | 0.01 | 0.94 | 0.95 | 0.98 |\n| vein endothelial cell | 454 | 0.44 | 0.47 | 0.53 | 0.16 | 0.00 | 0.35 | 0.44 | 0.54 | 0.57 |\n| endothelial cell of artery | 369 | 0.64 | 0.75 | 0.67 | 0.28 | 0.00 | 0.50 | 0.58 | 0.65 | 0.70 |\n| endothelial cell of lymphatic vessel | 227 | 0.66 | 0.69 | 0.70 | 0.55 | 0.00 | 0.50 | 0.61 | 0.67 | 0.68 |\n| retinal blood vessel endothelial cell | 181 | 0.50 | 0.26 | 0.58 | 0.05 | 0.00 | 0.00 | 0.56 | 0.63 | 0.63 |\n| endothelial cell of vascular tree | 84 | 0.42 | 0.80 | 0.45 | 0.42 | 0.00 | 0.15 | 0.57 | 0.63 | 0.72 |\n| colon endothelial cell | 12 | 0.25 | 0.50 | 0.42 | 0.00 | 0.00 | 0.00 | 0.13 | 0.27 | 0.50 |\n| endothelial cell of arteriole | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of venule | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 30182 | 0.73 | 0.84 | 0.89 | 0.74 | 0.00 | 0.89 | 0.73 | 0.79 | 0.92 |\n| capillary endothelial cell | 13803 | 0.75 | 0.80 | 0.85 | 0.65 | 0.00 | 0.83 | 0.72 | 0.79 | 0.87 |\n| cardiac endothelial cell | 9115 | 0.96 | 0.97 | 0.90 | 0.58 | 0.00 | 0.99 | 0.94 | 0.95 | 0.98 |\n| vein endothelial cell | 4230 | 0.45 | 0.41 | 0.71 | 0.39 | 0.00 | 0.68 | 0.51 | 0.56 | 0.71 |\n| endothelial cell of artery | 3098 | 0.62 | 0.71 | 0.79 | 0.49 | 0.00 | 0.69 | 0.61 | 0.68 | 0.77 |\n| endothelial cell of lymphatic vessel | 2191 | 0.64 | 0.66 | 0.83 | 0.70 | 0.00 | 0.74 | 0.61 | 0.70 | 0.78 |\n| retinal blood vessel endothelial cell | 1882 | 0.47 | 0.13 | 0.72 | 0.17 | 0.00 | 0.97 | 0.62 | 0.68 | 0.89 |\n| endothelial cell of vascular tree | 781 | 0.36 | 0.75 | 0.68 | 0.62 | 0.00 | 0.81 | 0.52 | 0.58 | 0.74 |\n| colon endothelial cell | 307 | 0.34 | 0.27 | 0.62 | 0.16 | 0.00 | 0.97 | 0.41 | 0.56 | 0.88 |\n| endothelial cell of arteriole | 112 | 0.00 | 0.06 | 0.53 | 0.02 | 0.00 | 0.77 | 0.34 | 0.60 | 0.93 |\n| endothelial cell of venule | 49 | 0.00 | 0.04 | 0.36 | 0.00 | 0.00 | 0.94 | 0.30 | 0.59 | 0.89 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 3249 | 0.74 | 0.86 | 0.81 | 0.65 | 0.00 | 0.62 | 0.72 | 0.76 | 0.85 |\n| capillary endothelial cell | 1488 | 0.73 | 0.83 | 0.76 | 0.53 | 0.00 | 0.56 | 0.71 | 0.76 | 0.79 |\n| cardiac endothelial cell | 1035 | 0.97 | 0.98 | 0.87 | 0.53 | 0.00 | 0.09 | 0.94 | 0.96 | 0.98 |\n| vein endothelial cell | 486 | 0.47 | 0.48 | 0.53 | 0.12 | 0.00 | 0.32 | 0.49 | 0.53 | 0.59 |\n| endothelial cell of artery | 295 | 0.63 | 0.73 | 0.70 | 0.35 | 0.00 | 0.46 | 0.56 | 0.65 | 0.70 |\n| endothelial cell of lymphatic vessel | 241 | 0.64 | 0.71 | 0.70 | 0.60 | 0.00 | 0.62 | 0.62 | 0.70 | 0.72 |\n| retinal blood vessel endothelial cell | 191 | 0.54 | 0.11 | 0.48 | 0.08 | 0.00 | 0.00 | 0.57 | 0.64 | 0.54 |\n| endothelial cell of vascular tree | 80 | 0.38 | 0.79 | 0.46 | 0.53 | 0.00 | 0.41 | 0.50 | 0.67 | 0.76 |\n| colon endothelial cell | 12 | 0.33 | 0.12 | 0.36 | 0.00 | 0.00 | 0.27 | 0.18 | 0.22 | 0.70 |\n| endothelial cell of arteriole | 9 | 0.00 | 0.20 | 0.50 | 0.00 | 0.00 | 0.20 | 0.16 | 0.51 | 0.62 |\n| endothelial cell of venule | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 0.50 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 30237 | 0.72 | 0.84 | 0.89 | 0.75 | 0.00 | 0.90 | 0.70 | 0.76 | 0.91 |\n| capillary endothelial cell | 13797 | 0.74 | 0.80 | 0.85 | 0.67 | 0.00 | 0.82 | 0.72 | 0.77 | 0.85 |\n| cardiac endothelial cell | 9044 | 0.96 | 0.97 | 0.91 | 0.62 | 0.00 | 0.99 | 0.94 | 0.96 | 0.99 |\n| vein endothelial cell | 4200 | 0.46 | 0.39 | 0.72 | 0.38 | 0.00 | 0.70 | 0.51 | 0.53 | 0.70 |\n| endothelial cell of artery | 3170 | 0.63 | 0.70 | 0.79 | 0.56 | 0.00 | 0.60 | 0.61 | 0.68 | 0.75 |\n| endothelial cell of lymphatic vessel | 2189 | 0.62 | 0.66 | 0.82 | 0.68 | 0.00 | 0.77 | 0.62 | 0.68 | 0.77 |\n| retinal blood vessel endothelial cell | 1871 | 0.51 | 0.11 | 0.72 | 0.21 | 0.00 | 0.99 | 0.58 | 0.66 | 0.87 |\n| endothelial cell of vascular tree | 787 | 0.40 | 0.77 | 0.71 | 0.61 | 0.00 | 0.85 | 0.51 | 0.64 | 0.79 |\n| colon endothelial cell | 308 | 0.33 | 0.26 | 0.64 | 0.19 | 0.00 | 1.00 | 0.43 | 0.48 | 0.87 |\n| endothelial cell of arteriole | 103 | 0.00 | 0.05 | 0.53 | 0.06 | 0.00 | 0.97 | 0.25 | 0.63 | 0.96 |\n| endothelial cell of venule | 48 | 0.00 | 0.00 | 0.32 | 0.08 | 0.00 | 0.80 | 0.32 | 0.64 | 0.81 |"
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celltypist.pkl

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scanvi/model.pt

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