{ | |
"popv_version": "0.5.0", | |
"anndata_version": "0.11.1", | |
"setup_dict": { | |
"ref_labels_key": "popv_labels", | |
"ref_batch_key": "batch_key", | |
"unknown_celltype_label": "unassigned" | |
}, | |
"prediction_keys": [ | |
"popv_celltypist_prediction", | |
"popv_knn_on_bbknn_prediction", | |
"popv_knn_on_harmony_prediction", | |
"popv_knn_on_scvi_prediction", | |
"popv_onclass_prediction", | |
"popv_scanvi_prediction", | |
"popv_svm_prediction", | |
"popv_xgboost_prediction" | |
], | |
"method_kwargs": {}, | |
"methods": [ | |
"celltypist", | |
"knn_on_bbknn", | |
"knn_on_harmony", | |
"knn_on_scvi", | |
"onclass", | |
"scanvi", | |
"svm", | |
"xgboost" | |
], | |
"cellxgene_url": "https://cellxgene.cziscience.com/e/5a11f879-d1ef-458a-910c-9b0bdfca5ebf.cxg/" | |
} |