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""" PyTorch Feature Extraction Helpers |
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A collection of classes, functions, modules to help extract features from models |
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and provide a common interface for describing them. |
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The return_layers, module re-writing idea inspired by torchvision IntermediateLayerGetter |
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https://github.com/pytorch/vision/blob/d88d8961ae51507d0cb680329d985b1488b1b76b/torchvision/models/_utils.py |
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Hacked together by / Copyright 2020 Ross Wightman |
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""" |
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from collections import OrderedDict, defaultdict |
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from copy import deepcopy |
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from functools import partial |
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from typing import Dict, List, Optional, Sequence, Set, Tuple, Union |
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import torch |
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import torch.nn as nn |
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from torch.utils.checkpoint import checkpoint |
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from timm.layers import Format |
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__all__ = [ |
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'FeatureInfo', 'FeatureHooks', 'FeatureDictNet', 'FeatureListNet', 'FeatureHookNet', 'FeatureGetterNet', |
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'feature_take_indices' |
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] |
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def _take_indices( |
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num_blocks: int, |
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n: Optional[Union[int, List[int], Tuple[int]]], |
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) -> Tuple[Set[int], int]: |
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if isinstance(n, int): |
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assert n >= 0 |
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take_indices = {x for x in range(num_blocks - n, num_blocks)} |
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else: |
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take_indices = {num_blocks + idx if idx < 0 else idx for idx in n} |
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return take_indices, max(take_indices) |
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def _take_indices_jit( |
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num_blocks: int, |
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n: Union[int, List[int], Tuple[int]], |
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) -> Tuple[List[int], int]: |
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if isinstance(n, int): |
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assert n >= 0 |
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take_indices = [num_blocks - n + i for i in range(n)] |
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elif isinstance(n, tuple): |
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take_indices = [num_blocks + idx if idx < 0 else idx for idx in n] |
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else: |
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take_indices = [num_blocks + idx if idx < 0 else idx for idx in n] |
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return take_indices, max(take_indices) |
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def feature_take_indices( |
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num_blocks: int, |
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indices: Optional[Union[int, List[int], Tuple[int]]] = None, |
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) -> Tuple[List[int], int]: |
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if indices is None: |
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indices = num_blocks |
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if torch.jit.is_scripting(): |
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return _take_indices_jit(num_blocks, indices) |
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else: |
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return _take_indices(num_blocks, indices) |
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def _out_indices_as_tuple(x: Union[int, Tuple[int, ...]]) -> Tuple[int, ...]: |
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if isinstance(x, int): |
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return tuple(range(-x, 0)) |
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return tuple(x) |
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OutIndicesT = Union[int, Tuple[int, ...]] |
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class FeatureInfo: |
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def __init__( |
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self, |
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feature_info: List[Dict], |
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out_indices: OutIndicesT, |
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): |
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out_indices = _out_indices_as_tuple(out_indices) |
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prev_reduction = 1 |
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for i, fi in enumerate(feature_info): |
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assert 'num_chs' in fi and fi['num_chs'] > 0 |
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assert 'reduction' in fi and fi['reduction'] >= prev_reduction |
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prev_reduction = fi['reduction'] |
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assert 'module' in fi |
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fi.setdefault('index', i) |
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self.out_indices = out_indices |
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self.info = feature_info |
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def from_other(self, out_indices: OutIndicesT): |
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out_indices = _out_indices_as_tuple(out_indices) |
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return FeatureInfo(deepcopy(self.info), out_indices) |
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def get(self, key: str, idx: Optional[Union[int, List[int]]] = None): |
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""" Get value by key at specified index (indices) |
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if idx == None, returns value for key at each output index |
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if idx is an integer, return value for that feature module index (ignoring output indices) |
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if idx is a list/tuple, return value for each module index (ignoring output indices) |
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""" |
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if idx is None: |
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return [self.info[i][key] for i in self.out_indices] |
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if isinstance(idx, (tuple, list)): |
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return [self.info[i][key] for i in idx] |
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else: |
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return self.info[idx][key] |
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def get_dicts(self, keys: Optional[List[str]] = None, idx: Optional[Union[int, List[int]]] = None): |
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""" return info dicts for specified keys (or all if None) at specified indices (or out_indices if None) |
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""" |
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if idx is None: |
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if keys is None: |
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return [self.info[i] for i in self.out_indices] |
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else: |
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return [{k: self.info[i][k] for k in keys} for i in self.out_indices] |
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if isinstance(idx, (tuple, list)): |
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return [self.info[i] if keys is None else {k: self.info[i][k] for k in keys} for i in idx] |
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else: |
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return self.info[idx] if keys is None else {k: self.info[idx][k] for k in keys} |
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def channels(self, idx: Optional[Union[int, List[int]]] = None): |
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""" feature channels accessor |
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""" |
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return self.get('num_chs', idx) |
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def reduction(self, idx: Optional[Union[int, List[int]]] = None): |
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""" feature reduction (output stride) accessor |
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""" |
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return self.get('reduction', idx) |
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def module_name(self, idx: Optional[Union[int, List[int]]] = None): |
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""" feature module name accessor |
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""" |
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return self.get('module', idx) |
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def __getitem__(self, item): |
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return self.info[item] |
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def __len__(self): |
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return len(self.info) |
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class FeatureHooks: |
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""" Feature Hook Helper |
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This module helps with the setup and extraction of hooks for extracting features from |
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internal nodes in a model by node name. |
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FIXME This works well in eager Python but needs redesign for torchscript. |
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""" |
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def __init__( |
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self, |
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hooks: Sequence[str], |
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named_modules: dict, |
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out_map: Sequence[Union[int, str]] = None, |
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default_hook_type: str = 'forward', |
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): |
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self._feature_outputs = defaultdict(OrderedDict) |
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self._handles = [] |
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modules = {k: v for k, v in named_modules} |
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for i, h in enumerate(hooks): |
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hook_name = h['module'] |
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m = modules[hook_name] |
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hook_id = out_map[i] if out_map else hook_name |
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hook_fn = partial(self._collect_output_hook, hook_id) |
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hook_type = h.get('hook_type', default_hook_type) |
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if hook_type == 'forward_pre': |
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handle = m.register_forward_pre_hook(hook_fn) |
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elif hook_type == 'forward': |
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handle = m.register_forward_hook(hook_fn) |
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else: |
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assert False, "Unsupported hook type" |
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self._handles.append(handle) |
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def _collect_output_hook(self, hook_id, *args): |
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x = args[-1] |
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if isinstance(x, tuple): |
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x = x[0] |
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self._feature_outputs[x.device][hook_id] = x |
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def get_output(self, device) -> Dict[str, torch.tensor]: |
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output = self._feature_outputs[device] |
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self._feature_outputs[device] = OrderedDict() |
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return output |
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def _module_list(module, flatten_sequential=False): |
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ml = [] |
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for name, module in module.named_children(): |
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if flatten_sequential and isinstance(module, nn.Sequential): |
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for child_name, child_module in module.named_children(): |
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combined = [name, child_name] |
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ml.append(('_'.join(combined), '.'.join(combined), child_module)) |
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else: |
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ml.append((name, name, module)) |
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return ml |
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def _get_feature_info(net, out_indices: OutIndicesT): |
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feature_info = getattr(net, 'feature_info') |
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if isinstance(feature_info, FeatureInfo): |
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return feature_info.from_other(out_indices) |
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elif isinstance(feature_info, (list, tuple)): |
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return FeatureInfo(net.feature_info, out_indices) |
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else: |
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assert False, "Provided feature_info is not valid" |
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def _get_return_layers(feature_info, out_map): |
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module_names = feature_info.module_name() |
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return_layers = {} |
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for i, name in enumerate(module_names): |
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return_layers[name] = out_map[i] if out_map is not None else feature_info.out_indices[i] |
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return return_layers |
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class FeatureDictNet(nn.ModuleDict): |
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""" Feature extractor with OrderedDict return |
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Wrap a model and extract features as specified by the out indices, the network is |
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partially re-built from contained modules. |
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There is a strong assumption that the modules have been registered into the model in the same |
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order as they are used. There should be no reuse of the same nn.Module more than once, including |
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trivial modules like `self.relu = nn.ReLU`. |
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Only submodules that are directly assigned to the model class (`model.feature1`) or at most |
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one Sequential container deep (`model.features.1`, with flatten_sequent=True) can be captured. |
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All Sequential containers that are directly assigned to the original model will have their |
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modules assigned to this module with the name `model.features.1` being changed to `model.features_1` |
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""" |
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def __init__( |
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self, |
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model: nn.Module, |
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out_indices: OutIndicesT = (0, 1, 2, 3, 4), |
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out_map: Sequence[Union[int, str]] = None, |
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output_fmt: str = 'NCHW', |
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feature_concat: bool = False, |
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flatten_sequential: bool = False, |
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): |
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""" |
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Args: |
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model: Model from which to extract features. |
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out_indices: Output indices of the model features to extract. |
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out_map: Return id mapping for each output index, otherwise str(index) is used. |
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feature_concat: Concatenate intermediate features that are lists or tuples instead of selecting |
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first element e.g. `x[0]` |
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flatten_sequential: Flatten first two-levels of sequential modules in model (re-writes model modules) |
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""" |
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super(FeatureDictNet, self).__init__() |
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self.feature_info = _get_feature_info(model, out_indices) |
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self.output_fmt = Format(output_fmt) |
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self.concat = feature_concat |
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self.grad_checkpointing = False |
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self.return_layers = {} |
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return_layers = _get_return_layers(self.feature_info, out_map) |
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modules = _module_list(model, flatten_sequential=flatten_sequential) |
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remaining = set(return_layers.keys()) |
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layers = OrderedDict() |
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for new_name, old_name, module in modules: |
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layers[new_name] = module |
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if old_name in remaining: |
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self.return_layers[new_name] = str(return_layers[old_name]) |
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remaining.remove(old_name) |
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if not remaining: |
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break |
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assert not remaining and len(self.return_layers) == len(return_layers), \ |
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f'Return layers ({remaining}) are not present in model' |
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self.update(layers) |
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def set_grad_checkpointing(self, enable: bool = True): |
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self.grad_checkpointing = enable |
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def _collect(self, x) -> (Dict[str, torch.Tensor]): |
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out = OrderedDict() |
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for i, (name, module) in enumerate(self.items()): |
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if self.grad_checkpointing and not torch.jit.is_scripting(): |
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first_or_last_module = i == 0 or i == max(len(self) - 1, 0) |
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x = module(x) if first_or_last_module else checkpoint(module, x) |
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else: |
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x = module(x) |
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if name in self.return_layers: |
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out_id = self.return_layers[name] |
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if isinstance(x, (tuple, list)): |
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out[out_id] = torch.cat(x, 1) if self.concat else x[0] |
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else: |
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out[out_id] = x |
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return out |
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def forward(self, x) -> Dict[str, torch.Tensor]: |
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return self._collect(x) |
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class FeatureListNet(FeatureDictNet): |
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""" Feature extractor with list return |
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A specialization of FeatureDictNet that always returns features as a list (values() of dict). |
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""" |
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def __init__( |
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self, |
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model: nn.Module, |
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out_indices: OutIndicesT = (0, 1, 2, 3, 4), |
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output_fmt: str = 'NCHW', |
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feature_concat: bool = False, |
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flatten_sequential: bool = False, |
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): |
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""" |
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Args: |
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model: Model from which to extract features. |
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out_indices: Output indices of the model features to extract. |
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feature_concat: Concatenate intermediate features that are lists or tuples instead of selecting |
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first element e.g. `x[0]` |
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flatten_sequential: Flatten first two-levels of sequential modules in model (re-writes model modules) |
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""" |
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super().__init__( |
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model, |
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out_indices=out_indices, |
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output_fmt=output_fmt, |
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feature_concat=feature_concat, |
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flatten_sequential=flatten_sequential, |
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) |
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def forward(self, x) -> (List[torch.Tensor]): |
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return list(self._collect(x).values()) |
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class FeatureHookNet(nn.ModuleDict): |
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""" FeatureHookNet |
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Wrap a model and extract features specified by the out indices using forward/forward-pre hooks. |
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If `no_rewrite` is True, features are extracted via hooks without modifying the underlying |
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network in any way. |
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If `no_rewrite` is False, the model will be re-written as in the |
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FeatureList/FeatureDict case by folding first to second (Sequential only) level modules into this one. |
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FIXME this does not currently work with Torchscript, see FeatureHooks class |
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""" |
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def __init__( |
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self, |
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model: nn.Module, |
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out_indices: OutIndicesT = (0, 1, 2, 3, 4), |
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out_map: Optional[Sequence[Union[int, str]]] = None, |
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return_dict: bool = False, |
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output_fmt: str = 'NCHW', |
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no_rewrite: bool = False, |
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flatten_sequential: bool = False, |
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default_hook_type: str = 'forward', |
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): |
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""" |
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Args: |
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model: Model from which to extract features. |
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out_indices: Output indices of the model features to extract. |
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out_map: Return id mapping for each output index, otherwise str(index) is used. |
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return_dict: Output features as a dict. |
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no_rewrite: Enforce that model is not re-written if True, ie no modules are removed / changed. |
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flatten_sequential arg must also be False if this is set True. |
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flatten_sequential: Re-write modules by flattening first two levels of nn.Sequential containers. |
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default_hook_type: The default hook type to use if not specified in model.feature_info. |
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""" |
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super().__init__() |
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assert not torch.jit.is_scripting() |
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self.feature_info = _get_feature_info(model, out_indices) |
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self.return_dict = return_dict |
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self.output_fmt = Format(output_fmt) |
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self.grad_checkpointing = False |
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layers = OrderedDict() |
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hooks = [] |
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if no_rewrite: |
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assert not flatten_sequential |
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if hasattr(model, 'reset_classifier'): |
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model.reset_classifier(0) |
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layers['body'] = model |
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hooks.extend(self.feature_info.get_dicts()) |
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else: |
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modules = _module_list(model, flatten_sequential=flatten_sequential) |
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remaining = { |
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f['module']: f['hook_type'] if 'hook_type' in f else default_hook_type |
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for f in self.feature_info.get_dicts() |
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} |
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for new_name, old_name, module in modules: |
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layers[new_name] = module |
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for fn, fm in module.named_modules(prefix=old_name): |
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if fn in remaining: |
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hooks.append(dict(module=fn, hook_type=remaining[fn])) |
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del remaining[fn] |
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if not remaining: |
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break |
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assert not remaining, f'Return layers ({remaining}) are not present in model' |
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self.update(layers) |
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self.hooks = FeatureHooks(hooks, model.named_modules(), out_map=out_map) |
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def set_grad_checkpointing(self, enable: bool = True): |
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self.grad_checkpointing = enable |
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def forward(self, x): |
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for i, (name, module) in enumerate(self.items()): |
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if self.grad_checkpointing and not torch.jit.is_scripting(): |
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first_or_last_module = i == 0 or i == max(len(self) - 1, 0) |
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x = module(x) if first_or_last_module else checkpoint(module, x) |
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else: |
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x = module(x) |
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out = self.hooks.get_output(x.device) |
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return out if self.return_dict else list(out.values()) |
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class FeatureGetterNet(nn.ModuleDict): |
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""" FeatureGetterNet |
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Wrap models with a feature getter method, like 'get_intermediate_layers' |
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""" |
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def __init__( |
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self, |
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model: nn.Module, |
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out_indices: OutIndicesT = 4, |
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out_map: Optional[Sequence[Union[int, str]]] = None, |
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return_dict: bool = False, |
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output_fmt: str = 'NCHW', |
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norm: bool = False, |
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prune: bool = True, |
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): |
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""" |
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Args: |
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model: Model to wrap. |
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out_indices: Indices of features to extract. |
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out_map: Remap feature names for dict output (WIP, not supported). |
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return_dict: Return features as dictionary instead of list (WIP, not supported). |
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norm: Apply final model norm to all output features (if possible). |
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""" |
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super().__init__() |
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if prune and hasattr(model, 'prune_intermediate_layers'): |
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out_indices = model.prune_intermediate_layers( |
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out_indices, |
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prune_norm=not norm, |
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) |
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out_indices = list(out_indices) |
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self.feature_info = _get_feature_info(model, out_indices) |
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self.model = model |
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self.out_indices = out_indices |
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self.out_map = out_map |
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self.return_dict = return_dict |
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self.output_fmt = output_fmt |
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self.norm = norm |
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def forward(self, x): |
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features = self.model.forward_intermediates( |
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x, |
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indices=self.out_indices, |
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norm=self.norm, |
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output_fmt=self.output_fmt, |
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intermediates_only=True, |
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) |
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return features |
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