Training complete
Browse files
README.md
ADDED
@@ -0,0 +1,71 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
---
|
2 |
+
base_model: dmis-lab/biobert-base-cased-v1.2
|
3 |
+
tags:
|
4 |
+
- generated_from_trainer
|
5 |
+
metrics:
|
6 |
+
- precision
|
7 |
+
- recall
|
8 |
+
- f1
|
9 |
+
- accuracy
|
10 |
+
model-index:
|
11 |
+
- name: BioBERT-full-finetuned-ner-pablo
|
12 |
+
results: []
|
13 |
+
---
|
14 |
+
|
15 |
+
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
|
16 |
+
should probably proofread and complete it, then remove this comment. -->
|
17 |
+
|
18 |
+
# BioBERT-full-finetuned-ner-pablo
|
19 |
+
|
20 |
+
This model is a fine-tuned version of [dmis-lab/biobert-base-cased-v1.2](https://huggingface.co/dmis-lab/biobert-base-cased-v1.2) on the None dataset.
|
21 |
+
It achieves the following results on the evaluation set:
|
22 |
+
- Loss: 0.1114
|
23 |
+
- Precision: 0.7951
|
24 |
+
- Recall: 0.7809
|
25 |
+
- F1: 0.7879
|
26 |
+
- Accuracy: 0.9690
|
27 |
+
|
28 |
+
## Model description
|
29 |
+
|
30 |
+
More information needed
|
31 |
+
|
32 |
+
## Intended uses & limitations
|
33 |
+
|
34 |
+
More information needed
|
35 |
+
|
36 |
+
## Training and evaluation data
|
37 |
+
|
38 |
+
More information needed
|
39 |
+
|
40 |
+
## Training procedure
|
41 |
+
|
42 |
+
### Training hyperparameters
|
43 |
+
|
44 |
+
The following hyperparameters were used during training:
|
45 |
+
- learning_rate: 0.0002
|
46 |
+
- train_batch_size: 4
|
47 |
+
- eval_batch_size: 4
|
48 |
+
- seed: 42
|
49 |
+
- gradient_accumulation_steps: 4
|
50 |
+
- total_train_batch_size: 16
|
51 |
+
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
|
52 |
+
- lr_scheduler_type: linear
|
53 |
+
- lr_scheduler_warmup_ratio: 0.05
|
54 |
+
- num_epochs: 3
|
55 |
+
- mixed_precision_training: Native AMP
|
56 |
+
|
57 |
+
### Training results
|
58 |
+
|
59 |
+
| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
|
60 |
+
|:-------------:|:------:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
|
61 |
+
| 0.1541 | 0.9998 | 2608 | 0.1456 | 0.6888 | 0.7147 | 0.7015 | 0.9601 |
|
62 |
+
| 0.1073 | 2.0 | 5217 | 0.1244 | 0.7397 | 0.7450 | 0.7423 | 0.9645 |
|
63 |
+
| 0.0744 | 2.9994 | 7824 | 0.1114 | 0.7951 | 0.7809 | 0.7879 | 0.9690 |
|
64 |
+
|
65 |
+
|
66 |
+
### Framework versions
|
67 |
+
|
68 |
+
- Transformers 4.44.0
|
69 |
+
- Pytorch 2.4.0+cu124
|
70 |
+
- Datasets 2.21.0
|
71 |
+
- Tokenizers 0.19.1
|