fix the label2id in config

config.json

@@ -1,5 +1,5 @@
 {
- "_name_or_path": "/home/ec2-user/SageMaker/LLM-NER-clinical-text/models/medmentions/gatortrons/checkpoint-5931",
+ "_name_or_path": "UFNLP/gatortrons",
  "architectures": [
  "MegatronBertForTokenClassification"
  ],
@@ -8,96 +8,75 @@
  "hidden_dropout_prob": 0.1,
  "hidden_size": 1024,
  "id2label": {
- "0": "LABEL_0",
- "1": "LABEL_1",
- "2": "LABEL_2",
- "3": "LABEL_3",
- "4": "LABEL_4",
- "5": "LABEL_5",
- "6": "LABEL_6",
- "7": "LABEL_7",
- "8": "LABEL_8",
- "9": "LABEL_9",
- "10": "LABEL_10",
- "11": "LABEL_11",
- "12": "LABEL_12",
- "13": "LABEL_13",
- "14": "LABEL_14",
- "15": "LABEL_15",
- "16": "LABEL_16",
- "17": "LABEL_17",
- "18": "LABEL_18",
- "19": "LABEL_19",
- "20": "LABEL_20",
- "21": "LABEL_21",
- "22": "LABEL_22",
- "23": "LABEL_23",
- "24": "LABEL_24",
- "25": "LABEL_25",
- "26": "LABEL_26",
- "27": "LABEL_27",
- "28": "LABEL_28",
- "29": "LABEL_29",
- "30": "LABEL_30",
- "31": "LABEL_31",
- "32": "LABEL_32",
- "33": "LABEL_33",
- "34": "LABEL_34",
- "35": "LABEL_35",
- "36": "LABEL_36",
- "37": "LABEL_37",
- "38": "LABEL_38",
- "39": "LABEL_39",
- "40": "LABEL_40",
- "41": "LABEL_41",
- "42": "LABEL_42"
+ "0": "['Living Beings', 'Virus']",
+ "1": "['Living Beings', 'Virus']",
+ "2": "['Living Beings', 'Bacterium']",
+ "3": "['Living Beings', 'Bacterium']",
+ "4": "['Anatomy', 'Anatomical Structure']",
+ "5": "['Anatomy', 'Anatomical Structure']",
+ "6": "['Anatomy', 'Body System']",
+ "7": "['Anatomy', 'Body System']",
+ "8": "['Anatomy', 'Body Substance']",
+ "9": "['Anatomy', 'Body Substance']",
+ "10": "['Disorders', 'Finding']",
+ "11": "['Disorders', 'Finding']",
+ "12": "['Disorders', 'Injury or Poisoning']",
+ "13": "['Disorders', 'Injury or Poisoning']",
+ "14": "['Phenomena', 'Biologic Function']",
+ "15": "['Phenomena', 'Biologic Function']",
+ "16": "['Procedures', 'Health Care Activity']",
+ "17": "['Procedures', 'Health Care Activity']",
+ "18": "['Procedures', 'Research Activity']",
+ "19": "['Procedures', 'Research Activity']",
+ "20": "['Devices', 'Medical Device']",
+ "21": "['Devices', 'Medical Device']",
+ "22": "['Concepts & Ideas', 'Spatial Concept']",
+ "23": "['Concepts & Ideas', 'Spatial Concept']",
+ "24": "['Occupations', 'Biomedical Occupation or Discipline']",
+ "25": "['Occupations', 'Biomedical Occupation or Discipline']",
+ "26": "['Organizations', 'Organization']",
+ "27": "['Organizations', 'Organization']",
+ "28": "['Living Beings', 'Professional or Occupational Group']",
+ "29": "['Living Beings', 'Professional or Occupational Group']",
+ "30": "['Living Beings', 'Population Group']",
+ "31": "['Living Beings', 'Population Group']",
+ "32": "['Chemicals & Drugs', 'Chemical']",
+ "33": "['Chemicals & Drugs', 'Chemical']",
+ "34": "['Objects', 'Food']",
+ "35": "['Objects', 'Food']",
+ "36": "['Concepts & Ideas', 'Intellectual Product']",
+ "37": "['Concepts & Ideas', 'Intellectual Product']",
+ "38": "['Physiology', 'Clinical Attribute']",
+ "39": "['Physiology', 'Clinical Attribute']",
+ "40": "['Living Beings', 'Eukaryote']",
+ "41": "['Living Beings', 'Eukaryote']",
+ "42": "None"
  },
  "initializer_range": 0.02,
  "intermediate_size": 4096,
  "label2id": {
- "LABEL_0": 0,
- "LABEL_1": 1,
- "LABEL_10": 10,
- "LABEL_11": 11,
- "LABEL_12": 12,
- "LABEL_13": 13,
- "LABEL_14": 14,
- "LABEL_15": 15,
- "LABEL_16": 16,
- "LABEL_17": 17,
- "LABEL_18": 18,
- "LABEL_19": 19,
- "LABEL_2": 2,
- "LABEL_20": 20,
- "LABEL_21": 21,
- "LABEL_22": 22,
- "LABEL_23": 23,
- "LABEL_24": 24,
- "LABEL_25": 25,
- "LABEL_26": 26,
- "LABEL_27": 27,
- "LABEL_28": 28,
- "LABEL_29": 29,
- "LABEL_3": 3,
- "LABEL_30": 30,
- "LABEL_31": 31,
- "LABEL_32": 32,
- "LABEL_33": 33,
- "LABEL_34": 34,
- "LABEL_35": 35,
- "LABEL_36": 36,
- "LABEL_37": 37,
- "LABEL_38": 38,
- "LABEL_39": 39,
- "LABEL_4": 4,
- "LABEL_40": 40,
- "LABEL_41": 41,
- "LABEL_42": 42,
- "LABEL_5": 5,
- "LABEL_6": 6,
- "LABEL_7": 7,
- "LABEL_8": 8,
- "LABEL_9": 9
+ "['Living Beings', 'Virus']": 1,
+ "['Living Beings', 'Bacterium']": 3,
+ "['Anatomy', 'Anatomical Structure']": 5,
+ "['Anatomy', 'Body System']": 7,
+ "['Anatomy', 'Body Substance']": 9,
+ "['Disorders', 'Finding']": 11,
+ "['Disorders', 'Injury or Poisoning']": 13,
+ "['Phenomena', 'Biologic Function']": 15,
+ "['Procedures', 'Health Care Activity']": 17,
+ "['Procedures', 'Research Activity']": 19,
+ "['Devices', 'Medical Device']": 21,
+ "['Concepts & Ideas', 'Spatial Concept']": 23,
+ "['Occupations', 'Biomedical Occupation or Discipline']": 25,
+ "['Organizations', 'Organization']": 27,
+ "['Living Beings', 'Professional or Occupational Group']": 29,
+ "['Living Beings', 'Population Group']": 31,
+ "['Chemicals & Drugs', 'Chemical']": 33,
+ "['Objects', 'Food']": 35,
+ "['Concepts & Ideas', 'Intellectual Product']": 37,
+ "['Physiology', 'Clinical Attribute']": 39,
+ "['Living Beings', 'Eukaryote']": 41,
+ "None": 42
  },
  "layer_norm_eps": 1e-12,
  "max_position_embeddings": 512,
@@ -112,4 +91,4 @@
  "type_vocab_size": 2,
  "use_cache": true,
  "vocab_size": 50176
-}
+}