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README.md
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*Replace test_data with the path to a CSV file containing the protein sequences, name_of_the_column with the name of the column of the protein sequence in the CSV and output_path with the filename of the JSON file to be created with the embeddings.*
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```python
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python inference.py --
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```
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- Run the inference for Drugs:
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*Replace test_data with the path to a CSV file containing the Drug SMILES, name_of_the_column with the name of the column of the SMILES in the CSV and output_path with the filename of the JSON file to be created with the embeddings.*.*
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```python
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python inference.py --
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```
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*Replace test_data with the path to a CSV file containing the protein sequences, name_of_the_column with the name of the column of the protein sequence in the CSV and output_path with the filename of the JSON file to be created with the embeddings.*
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```python
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python inference.py --input_path test_data --sequence_column name_of_the_column --model_path ibm/otter_primekg_transe --output_path output_path
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```
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- Run the inference for Drugs:
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*Replace test_data with the path to a CSV file containing the Drug SMILES, name_of_the_column with the name of the column of the SMILES in the CSV and output_path with the filename of the JSON file to be created with the embeddings.*.*
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```python
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python inference.py --input_path test_data --sequence_column name_of_the_column input_type Drug --relation_name smiles --model_path ibm/otter_primekg_transe --output_path output_path
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```
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