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README.md

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+---
+tags:
+- espnet
+- audio
+- classification
+language: en
+datasets:
+- bean
+license: cc-by-4.0
+---
+
+## ESPnet2 CLS model
+
+### `espnet/BEATs-BEAN.HumBugDB`
+
+This model was trained by Shikhar Bharadwaj using bean recipe in [espnet](https://github.com/espnet/espnet/).
+
+### Demo: How to use in ESPnet2
+
+Follow the [ESPnet installation instructions](https://espnet.github.io/espnet/installation.html)
+if you haven't done that already.
+
+```bash
+cd espnet
+git checkout 9191aa59acc7d3ceaca1f48dcc8fbdad2e03484b
+pip install -e .
+cd egs2/bean/cls1
+./run.sh --skip_data_prep false --skip_train true --download_model espnet/BEATs-BEAN.HumBugDB
+```
+
+<!-- Generated by scripts/utils/show_cls_result.sh -->
+# RESULTS
+## Environments
+- date: `Tue Jan  7 19:11:31 EST 2025`
+- python version: `3.9.20 (main, Oct  3 2024, 07:27:41)  [GCC 11.2.0]`
+- espnet version: `espnet 202412`
+- pytorch version: `pytorch 2.4.0`
+- Git hash: `9191aa59acc7d3ceaca1f48dcc8fbdad2e03484b`
+  - Commit date: `Tue Jan 7 04:34:03 2025 -0500`
+
+## cls_humbugdb.20250107.141123
+|Dataset|Metric|Value|
+|---|---|---|
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|mean_acc|86.35
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|mAP|66.74
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|mean_auc|96.32
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|n_labels|14.00
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|n_instances|1604.00
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|mean_acc|80.63
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|mAP|67.20
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|mean_auc|94.15
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|n_labels|14.00
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|n_instances|1859.00
+
+## CLS config
+
+<details><summary>expand</summary>
+
+```
+config: conf/beats_humbugdb.yaml
+print_config: false
+log_level: INFO
+drop_last_iter: false
+dry_run: false
+iterator_type: sequence
+valid_iterator_type: null
+output_dir: /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123
+ngpu: 1
+seed: 0
+num_workers: 2
+num_att_plot: 0
+dist_backend: nccl
+dist_init_method: env://
+dist_world_size: null
+dist_rank: null
+local_rank: 0
+dist_master_addr: null
+dist_master_port: null
+dist_launcher: null
+multiprocessing_distributed: false
+unused_parameters: true
+sharded_ddp: false
+use_deepspeed: false
+deepspeed_config: null
+cudnn_enabled: true
+cudnn_benchmark: false
+cudnn_deterministic: true
+use_tf32: false
+collect_stats: false
+write_collected_feats: false
+max_epoch: 250
+patience: null
+val_scheduler_criterion:
+- valid
+- loss
+early_stopping_criterion:
+- valid
+- loss
+- min
+best_model_criterion:
+-   - valid
+    - acc
+    - max
+keep_nbest_models: 1
+nbest_averaging_interval: 0
+grad_clip: 1
+grad_clip_type: 2.0
+grad_noise: false
+accum_grad: 1
+no_forward_run: false
+resume: true
+train_dtype: float32
+use_amp: false
+log_interval: null
+use_matplotlib: true
+use_tensorboard: true
+create_graph_in_tensorboard: false
+use_wandb: false
+wandb_project: null
+wandb_id: null
+wandb_entity: null
+wandb_name: null
+wandb_model_log_interval: -1
+detect_anomaly: false
+use_adapter: false
+adapter: lora
+save_strategy: all
+adapter_conf: {}
+pretrain_path: null
+init_param: []
+ignore_init_mismatch: false
+freeze_param: []
+num_iters_per_epoch: null
+batch_size: 32
+valid_batch_size: 32
+batch_bins: 1000000
+valid_batch_bins: null
+category_sample_size: 10
+train_shape_file:
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/train/speech_shape
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/train/label_shape
+valid_shape_file:
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/valid/speech_shape
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/valid/label_shape
+batch_type: folded
+valid_batch_type: null
+fold_length:
+- 160000
+- 5
+sort_in_batch: descending
+shuffle_within_batch: false
+sort_batch: descending
+multiple_iterator: false
+chunk_length: 500
+chunk_shift_ratio: 0.5
+num_cache_chunks: 1024
+chunk_excluded_key_prefixes: []
+chunk_default_fs: null
+chunk_max_abs_length: null
+chunk_discard_short_samples: true
+train_data_path_and_name_and_type:
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.train/wav.scp
+    - speech
+    - sound
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.train/text
+    - label
+    - text
+valid_data_path_and_name_and_type:
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.dev/wav.scp
+    - speech
+    - sound
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.dev/text
+    - label
+    - text
+multi_task_dataset: false
+allow_variable_data_keys: false
+max_cache_size: 0.0
+max_cache_fd: 32
+allow_multi_rates: false
+valid_max_cache_size: null
+exclude_weight_decay: false
+exclude_weight_decay_conf: {}
+optim: adamw
+optim_conf:
+    lr: 3.0e-05
+    weight_decay: 0.01
+    betas:
+    - 0.9
+    - 0.98
+scheduler: cosineannealingwarmuprestarts
+scheduler_conf:
+    first_cycle_steps: 95000
+    warmup_steps: 8000
+    max_lr: 3.0e-05
+    min_lr: 5.0e-06
+token_list:
+- non-mosquito
+- an_arabiensis
+- an_gambiae_ss
+- others
+- culex_quinquefasciatus
+- culex_pipiens_complex
+- an_funestus_ss
+- an_squamosus
+- ma_uniformis
+- an_dirus
+- an_harrisoni
+- an_maculatus
+- ae_aegypti
+- an_funestus_sl
+- <unk>
+token_type: word
+init: xavier_normal
+input_size: 1
+use_preprocessor: true
+frontend: null
+frontend_conf: {}
+specaug: null
+specaug_conf: {}
+normalize: null
+normalize_conf: {}
+preencoder: null
+preencoder_conf: {}
+encoder: beats
+encoder_conf:
+    beats_ckpt_path: /compute/babel-13-33/sbharad2/models/BEATs/BEATs_iter3.pt
+    beats_config:
+        layer_wise_gradient_decay_ratio: 0.3
+        encoder_layerdrop: 0.1
+        dropout: 0.0
+    use_weighted_representation: false
+    specaug_config:
+        apply_time_warp: true
+        apply_freq_mask: false
+        apply_time_mask: true
+        time_mask_width_ratio_range:
+        - 0
+        - 0.06
+        num_time_mask: 1
+    roll_augment: true
+    roll_interval: 1
+decoder: linear
+decoder_conf: {}
+model: espnet
+model_conf:
+    classification_type: multi-class
+    mixup_augmentation: false
+    lsm_weight: 0.1
+required:
+- output_dir
+- token_list
+version: '202412'
+distributed: false
+```
+
+</details>
+
+
+
+### Citing ESPnet
+
+```BibTex
+@inproceedings{watanabe2018espnet,
+  author={Shinji Watanabe and Takaaki Hori and Shigeki Karita and Tomoki Hayashi and Jiro Nishitoba and Yuya Unno and Nelson Yalta and Jahn Heymann and Matthew Wiesner and Nanxin Chen and Adithya Renduchintala and Tsubasa Ochiai},
+  title={{ESPnet}: End-to-End Speech Processing Toolkit},
+  year={2018},
+  booktitle={Proceedings of Interspeech},
+  pages={2207--2211},
+  doi={10.21437/Interspeech.2018-1456},
+  url={http://dx.doi.org/10.21437/Interspeech.2018-1456}
+}
+
+
+
+
+
+
+```
+
+or arXiv:
+
+```bibtex
+@misc{watanabe2018espnet,
+  title={ESPnet: End-to-End Speech Processing Toolkit},
+  author={Shinji Watanabe and Takaaki Hori and Shigeki Karita and Tomoki Hayashi and Jiro Nishitoba and Yuya Unno and Nelson Yalta and Jahn Heymann and Matthew Wiesner and Nanxin Chen and Adithya Renduchintala and Tsubasa Ochiai},
+  year={2018},
+  eprint={1804.00015},
+  archivePrefix={arXiv},
+  primaryClass={cs.CL}
+}
+```

bean.humbugdb/data/token_list

@@ -0,0 +1,15 @@
+non-mosquito
+an_arabiensis
+an_gambiae_ss
+others
+culex_quinquefasciatus
+culex_pipiens_complex
+an_funestus_ss
+an_squamosus
+ma_uniformis
+an_dirus
+an_harrisoni
+an_maculatus
+ae_aegypti
+an_funestus_sl
+<unk>

bean.humbugdb/exp/cls_humbugdb.20250107.141123/219epoch.pth

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:05ca9274cadc60e9075f713924143ccb6ab95dc7605ae580d1148515fb9d2bbd
+size 361385029

bean.humbugdb/exp/cls_humbugdb.20250107.141123/RESULTS.md

@@ -0,0 +1,24 @@
+<!-- Generated by scripts/utils/show_cls_result.sh -->
+# RESULTS
+## Environments
+- date: `Tue Jan  7 19:11:31 EST 2025`
+- python version: `3.9.20 (main, Oct  3 2024, 07:27:41)  [GCC 11.2.0]`
+- espnet version: `espnet 202412`
+- pytorch version: `pytorch 2.4.0`
+- Git hash: `9191aa59acc7d3ceaca1f48dcc8fbdad2e03484b`
+  - Commit date: `Tue Jan 7 04:34:03 2025 -0500`
+
+## cls_humbugdb.20250107.141123
+|Dataset|Metric|Value|
+|---|---|---|
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|mean_acc|86.35
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|mAP|66.74
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|mean_auc|96.32
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|n_labels|14.00
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.dev/score|n_instances|1604.00
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|mean_acc|80.63
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|mAP|67.20
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|mean_auc|94.15
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|n_labels|14.00
+/compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/cls_humbugdb.test/score|n_instances|1859.00
+

bean.humbugdb/exp/cls_humbugdb.20250107.141123/config.yaml

@@ -0,0 +1,194 @@
+config: conf/beats_humbugdb.yaml
+print_config: false
+log_level: INFO
+drop_last_iter: false
+dry_run: false
+iterator_type: sequence
+valid_iterator_type: null
+output_dir: /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123
+ngpu: 1
+seed: 0
+num_workers: 2
+num_att_plot: 0
+dist_backend: nccl
+dist_init_method: env://
+dist_world_size: null
+dist_rank: null
+local_rank: 0
+dist_master_addr: null
+dist_master_port: null
+dist_launcher: null
+multiprocessing_distributed: false
+unused_parameters: true
+sharded_ddp: false
+use_deepspeed: false
+deepspeed_config: null
+cudnn_enabled: true
+cudnn_benchmark: false
+cudnn_deterministic: true
+use_tf32: false
+collect_stats: false
+write_collected_feats: false
+max_epoch: 250
+patience: null
+val_scheduler_criterion:
+- valid
+- loss
+early_stopping_criterion:
+- valid
+- loss
+- min
+best_model_criterion:
+-   - valid
+    - acc
+    - max
+keep_nbest_models: 1
+nbest_averaging_interval: 0
+grad_clip: 1
+grad_clip_type: 2.0
+grad_noise: false
+accum_grad: 1
+no_forward_run: false
+resume: true
+train_dtype: float32
+use_amp: false
+log_interval: null
+use_matplotlib: true
+use_tensorboard: true
+create_graph_in_tensorboard: false
+use_wandb: false
+wandb_project: null
+wandb_id: null
+wandb_entity: null
+wandb_name: null
+wandb_model_log_interval: -1
+detect_anomaly: false
+use_adapter: false
+adapter: lora
+save_strategy: all
+adapter_conf: {}
+pretrain_path: null
+init_param: []
+ignore_init_mismatch: false
+freeze_param: []
+num_iters_per_epoch: null
+batch_size: 32
+valid_batch_size: 32
+batch_bins: 1000000
+valid_batch_bins: null
+category_sample_size: 10
+train_shape_file:
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/train/speech_shape
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/train/label_shape
+valid_shape_file:
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/valid/speech_shape
+- /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_stats_16k/valid/label_shape
+batch_type: folded
+valid_batch_type: null
+fold_length:
+- 160000
+- 5
+sort_in_batch: descending
+shuffle_within_batch: false
+sort_batch: descending
+multiple_iterator: false
+chunk_length: 500
+chunk_shift_ratio: 0.5
+num_cache_chunks: 1024
+chunk_excluded_key_prefixes: []
+chunk_default_fs: null
+chunk_max_abs_length: null
+chunk_discard_short_samples: true
+train_data_path_and_name_and_type:
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.train/wav.scp
+    - speech
+    - sound
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.train/text
+    - label
+    - text
+valid_data_path_and_name_and_type:
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.dev/wav.scp
+    - speech
+    - sound
+-   - /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/dump/humbugdb.dev/text
+    - label
+    - text
+multi_task_dataset: false
+allow_variable_data_keys: false
+max_cache_size: 0.0
+max_cache_fd: 32
+allow_multi_rates: false
+valid_max_cache_size: null
+exclude_weight_decay: false
+exclude_weight_decay_conf: {}
+optim: adamw
+optim_conf:
+    lr: 3.0e-05
+    weight_decay: 0.01
+    betas:
+    - 0.9
+    - 0.98
+scheduler: cosineannealingwarmuprestarts
+scheduler_conf:
+    first_cycle_steps: 95000
+    warmup_steps: 8000
+    max_lr: 3.0e-05
+    min_lr: 5.0e-06
+token_list:
+- non-mosquito
+- an_arabiensis
+- an_gambiae_ss
+- others
+- culex_quinquefasciatus
+- culex_pipiens_complex
+- an_funestus_ss
+- an_squamosus
+- ma_uniformis
+- an_dirus
+- an_harrisoni
+- an_maculatus
+- ae_aegypti
+- an_funestus_sl
+- <unk>
+token_type: word
+init: xavier_normal
+input_size: 1
+use_preprocessor: true
+frontend: null
+frontend_conf: {}
+specaug: null
+specaug_conf: {}
+normalize: null
+normalize_conf: {}
+preencoder: null
+preencoder_conf: {}
+encoder: beats
+encoder_conf:
+    beats_ckpt_path: /compute/babel-13-33/sbharad2/models/BEATs/BEATs_iter3.pt
+    beats_config:
+        layer_wise_gradient_decay_ratio: 0.3
+        encoder_layerdrop: 0.1
+        dropout: 0.0
+    use_weighted_representation: false
+    specaug_config:
+        apply_time_warp: true
+        apply_freq_mask: false
+        apply_time_mask: true
+        time_mask_width_ratio_range:
+        - 0
+        - 0.06
+        num_time_mask: 1
+    roll_augment: true
+    roll_interval: 1
+decoder: linear
+decoder_conf: {}
+model: espnet
+model_conf:
+    classification_type: multi-class
+    mixup_augmentation: false
+    lsm_weight: 0.1
+required:
+- output_dir
+- token_list
+version: '202412'
+distributed: false

meta.yaml

@@ -0,0 +1,8 @@
+espnet: '202412'
+files:
+  classification_model_file: /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/219epoch.pth
+python: "3.9.20 (main, Oct  3 2024, 07:27:41) \n[GCC 11.2.0]"
+timestamp: 1736336817.841514
+torch: 2.4.0
+yaml_files:
+  classification_train_config: /compute/babel-11-13/sbharad2/beats_run/bean.humbugdb/exp/cls_humbugdb.20250107.141123/config.yaml