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license: cc-by-sa-4.0
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## Project Description
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This repository contains the trained model for our paper: **Fine-tuning a Sentence Transformer for DNA & Protein tasks** that is currently under review at BMC Bioinformatics. This model, called **simcse-dna**; is based on the original implementation of **SimCSE [1]**. The original model was adapted for DNA downstream tasks by training it on a small sample size k-mer tokens generated from the human reference genome, and can be used to generate sentence embeddings for DNA tasks.
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license: cc-by-sa-4.0
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tags:
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- DNA
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- biology
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- genomics
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## Project Description
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This repository contains the trained model for our paper: **Fine-tuning a Sentence Transformer for DNA & Protein tasks** that is currently under review at BMC Bioinformatics. This model, called **simcse-dna**; is based on the original implementation of **SimCSE [1]**. The original model was adapted for DNA downstream tasks by training it on a small sample size k-mer tokens generated from the human reference genome, and can be used to generate sentence embeddings for DNA tasks.
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