| { | |
| "lang":"en", | |
| "name":"ner_bionlp13cg_md", | |
| "version":"0.5.3", | |
| "description":"Spacy Models for Biomedical Text.", | |
| "author":"Allen Institute for Artificial Intelligence", | |
| "email":"[email protected]", | |
| "url":"https://allenai.github.io/SciSpaCy/", | |
| "license":"CC BY-SA 3.0", | |
| "spacy_version":">=3.6.1,<3.7.0", | |
| "spacy_git_version":"458bc5f45", | |
| "vectors":{ | |
| "width":200, | |
| "vectors":50000, | |
| "keys":4087446, | |
| "name":"en_core_sci_md.vectors" | |
| }, | |
| "labels":{ | |
| "tok2vec":[ | |
| ], | |
| "tagger":[ | |
| "$", | |
| "''", | |
| ",", | |
| "-LRB-", | |
| "-RRB-", | |
| ".", | |
| ":", | |
| "ADD", | |
| "AFX", | |
| "CC", | |
| "CD", | |
| "DT", | |
| "EX", | |
| "FW", | |
| "HYPH", | |
| "IN", | |
| "JJ", | |
| "JJR", | |
| "JJS", | |
| "LS", | |
| "MD", | |
| "NFP", | |
| "NN", | |
| "NNP", | |
| "NNPS", | |
| "NNS", | |
| "PDT", | |
| "POS", | |
| "PRP", | |
| "PRP$", | |
| "RB", | |
| "RBR", | |
| "RBS", | |
| "RP", | |
| "SYM", | |
| "TO", | |
| "UH", | |
| "VB", | |
| "VBD", | |
| "VBG", | |
| "VBN", | |
| "VBP", | |
| "VBZ", | |
| "WDT", | |
| "WP", | |
| "WP$", | |
| "WRB", | |
| "XX", | |
| "``" | |
| ], | |
| "attribute_ruler":[ | |
| ], | |
| "lemmatizer":[ | |
| ], | |
| "parser":[ | |
| "ROOT", | |
| "acl", | |
| "acl:relcl", | |
| "acomp", | |
| "advcl", | |
| "advmod", | |
| "amod", | |
| "amod@nmod", | |
| "appos", | |
| "attr", | |
| "aux", | |
| "auxpass", | |
| "case", | |
| "cc", | |
| "cc:preconj", | |
| "ccomp", | |
| "compound", | |
| "compound:prt", | |
| "conj", | |
| "cop", | |
| "csubj", | |
| "dative", | |
| "dep", | |
| "det", | |
| "det:predet", | |
| "dobj", | |
| "expl", | |
| "intj", | |
| "mark", | |
| "meta", | |
| "mwe", | |
| "neg", | |
| "nmod", | |
| "nmod:npmod", | |
| "nmod:poss", | |
| "nmod:tmod", | |
| "nsubj", | |
| "nsubjpass", | |
| "nummod", | |
| "parataxis", | |
| "pcomp", | |
| "pobj", | |
| "preconj", | |
| "predet", | |
| "prep", | |
| "punct", | |
| "quantmod", | |
| "xcomp" | |
| ], | |
| "ner":[ | |
| "AMINO_ACID", | |
| "ANATOMICAL_SYSTEM", | |
| "CANCER", | |
| "CELL", | |
| "CELLULAR_COMPONENT", | |
| "DEVELOPING_ANATOMICAL_STRUCTURE", | |
| "GENE_OR_GENE_PRODUCT", | |
| "IMMATERIAL_ANATOMICAL_ENTITY", | |
| "MULTI_TISSUE_STRUCTURE", | |
| "ORGAN", | |
| "ORGANISM", | |
| "ORGANISM_SUBDIVISION", | |
| "ORGANISM_SUBSTANCE", | |
| "PATHOLOGICAL_FORMATION", | |
| "SIMPLE_CHEMICAL", | |
| "TISSUE" | |
| ] | |
| }, | |
| "pipeline":[ | |
| "tok2vec", | |
| "tagger", | |
| "attribute_ruler", | |
| "lemmatizer", | |
| "parser", | |
| "ner" | |
| ], | |
| "components":[ | |
| "tok2vec", | |
| "tagger", | |
| "attribute_ruler", | |
| "lemmatizer", | |
| "parser", | |
| "ner" | |
| ], | |
| "disabled":[ | |
| ], | |
| "performance":{ | |
| "tag_acc":0.0, | |
| "lemma_acc":0.0, | |
| "dep_uas":0.0, | |
| "dep_las":0.0, | |
| "dep_las_per_type":0.0, | |
| "sents_p":0.0, | |
| "sents_r":0.0, | |
| "sents_f":0.0, | |
| "ents_f":0.7808239261, | |
| "ents_p":0.7980221756, | |
| "ents_r":0.7643513203, | |
| "ents_per_type":{ | |
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| "r":0.6439909297, | |
| "f":0.6960784314 | |
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| "r":0.8432055749, | |
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| "MULTI_TISSUE_STRUCTURE":{ | |
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| "f":0.6147859922 | |
| }, | |
| "CANCER":{ | |
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| "r":0.8193069307, | |
| "f":0.7985524729 | |
| }, | |
| "GENE_OR_GENE_PRODUCT":{ | |
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| "r":0.8155120482, | |
| "f":0.8346820809 | |
| }, | |
| "CELL":{ | |
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| "r":0.7707509881, | |
| "f":0.7768924303 | |
| }, | |
| "ORGANISM_SUBSTANCE":{ | |
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| "r":0.4848484848, | |
| "f":0.5925925926 | |
| }, | |
| "ORGANISM_SUBDIVISION":{ | |
| "p":0.75, | |
| "r":0.5, | |
| "f":0.6 | |
| }, | |
| "TISSUE":{ | |
| "p":0.6543209877, | |
| "r":0.6708860759, | |
| "f":0.6625 | |
| }, | |
| "ORGAN":{ | |
| "p":0.8088235294, | |
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| }, | |
| "CELLULAR_COMPONENT":{ | |
| "p":0.7244897959, | |
| "r":0.7802197802, | |
| "f":0.7513227513 | |
| }, | |
| "IMMATERIAL_ANATOMICAL_ENTITY":{ | |
| "p":0.9090909091, | |
| "r":0.5555555556, | |
| "f":0.6896551724 | |
| }, | |
| "AMINO_ACID":{ | |
| "p":0.6315789474, | |
| "r":0.7741935484, | |
| "f":0.6956521739 | |
| }, | |
| "PATHOLOGICAL_FORMATION":{ | |
| "p":0.652173913, | |
| "r":0.3409090909, | |
| "f":0.447761194 | |
| }, | |
| "ANATOMICAL_SYSTEM":{ | |
| "p":1.0, | |
| "r":0.6666666667, | |
| "f":0.8 | |
| }, | |
| "DEVELOPING_ANATOMICAL_STRUCTURE":{ | |
| "p":0.6666666667, | |
| "r":0.4, | |
| "f":0.5 | |
| } | |
| }, | |
| "ner_loss":5887.003366243 | |
| }, | |
| "sources":[ | |
| "BIONLP13CG", | |
| "OntoNotes 5", | |
| "Common Crawl", | |
| "GENIA 1.0" | |
| ], | |
| "requirements":[ | |
| ] | |
| } |