thbndi commited on
Commit
e61a35a
·
1 Parent(s): ba8667a

Update Mimic4Dataset.py

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Files changed (1) hide show
  1. Mimic4Dataset.py +4 -5
Mimic4Dataset.py CHANGED
@@ -27,22 +27,20 @@ class Mimic4DatasetConfig(datasets.BuilderConfig):
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  **kwargs,
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  ):
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- super(Mimic4DatasetConfig, self).__init__(self.mimic_path, **kwargs)
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- mimic_path = mimic_path
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  #self.config = config
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  #cohort.task_cohort(self.task,self.mimic_path)
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  class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  VERSION = datasets.Version("1.0.0")
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- PATH = Mimic4DatasetConfig.mimic_path
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  BUILDER_CONFIGS = [
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  Mimic4DatasetConfig(
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  name="Phenotype",
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  version=VERSION,
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  data_dir=os.path.abspath("./data/dict/cohort_icu_readmission_30_I50"),
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- description="Dataset for mimic4 Phenotype task",
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- mimic_path = PATH
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  ),
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  Mimic4DatasetConfig(
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  name="Readmission",
@@ -105,6 +103,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  def _split_generators(self, dl_manager):
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  data_dir = self.config.data_dir + "/dataDic"
 
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  return [
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  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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  ]
 
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  **kwargs,
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  ):
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+ self.mimic_path = mimic_path
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+ super(Mimic4DatasetConfig, self).__init__(**kwargs)
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  #self.config = config
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  #cohort.task_cohort(self.task,self.mimic_path)
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  class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  VERSION = datasets.Version("1.0.0")
 
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  BUILDER_CONFIGS = [
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  Mimic4DatasetConfig(
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  name="Phenotype",
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  version=VERSION,
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  data_dir=os.path.abspath("./data/dict/cohort_icu_readmission_30_I50"),
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+ description="Dataset for mimic4 Phenotype task"
 
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  ),
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  Mimic4DatasetConfig(
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  name="Readmission",
 
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  def _split_generators(self, dl_manager):
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  data_dir = self.config.data_dir + "/dataDic"
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+ mimic=self.mimic_path
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  return [
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  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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  ]