Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +4 -5
Mimic4Dataset.py
CHANGED
@@ -27,22 +27,20 @@ class Mimic4DatasetConfig(datasets.BuilderConfig):
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**kwargs,
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):
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-
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-
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#self.config = config
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#cohort.task_cohort(self.task,self.mimic_path)
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class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.0.0")
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-
PATH = Mimic4DatasetConfig.mimic_path
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BUILDER_CONFIGS = [
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Mimic4DatasetConfig(
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name="Phenotype",
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version=VERSION,
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data_dir=os.path.abspath("./data/dict/cohort_icu_readmission_30_I50"),
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description="Dataset for mimic4 Phenotype task"
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mimic_path = PATH
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),
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Mimic4DatasetConfig(
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name="Readmission",
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@@ -105,6 +103,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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def _split_generators(self, dl_manager):
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data_dir = self.config.data_dir + "/dataDic"
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return [
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datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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]
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**kwargs,
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):
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+
self.mimic_path = mimic_path
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+
super(Mimic4DatasetConfig, self).__init__(**kwargs)
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#self.config = config
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#cohort.task_cohort(self.task,self.mimic_path)
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class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.0.0")
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BUILDER_CONFIGS = [
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Mimic4DatasetConfig(
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name="Phenotype",
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version=VERSION,
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data_dir=os.path.abspath("./data/dict/cohort_icu_readmission_30_I50"),
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+
description="Dataset for mimic4 Phenotype task"
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),
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Mimic4DatasetConfig(
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name="Readmission",
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def _split_generators(self, dl_manager):
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data_dir = self.config.data_dir + "/dataDic"
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mimic=self.mimic_path
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return [
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datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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]
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