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- ---
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- license: mit
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ license: mit
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+ task_categories:
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+ - text-classification
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+ - translation
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+ - zero-shot-classification
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+ - text2text-generation
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+ - fill-mask
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+ tags:
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+ - chemistry
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+ - biology
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+ - synthetic
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+ - SMILES
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+ size_categories:
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+ - 10M<n<100M
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+ ---
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+ # cyc-pep-6-12mer-70M-2024
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+
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+ Set of 70 million (almost) unique cyclic and linear peptides comprising 6-12 amino acids.
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+
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+ ## Dataset Details
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+
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+ ### Dataset Description
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+
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+ - **Curated by:** [@eachanjohnson](https://huggingface.co/eachanjohnson)
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+ - **Funded by:** The Francis Crick Institute
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+ - **License:** MIT
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+
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+ ### Dataset Sources [optional]
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+
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+ <!-- Provide the basic links for the dataset. -->
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+
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+ - **Repository:** [https://huggingface.co/datasets/scbirlab/cyc-pep-6-12mer-70M-2024]
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+ <!-- - **Paper [optional]:** [More Information Needed]
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+ - **Demo [optional]:** [More Information Needed] -->
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+
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+ ## Uses
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+
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+ Developing chemistry models around cyclic peptides.
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+
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+ <!-- ### Direct Use -->
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+
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+ <!-- This section describes suitable use cases for the dataset. -->
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+
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+ <!-- [More Information Needed]
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+
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+ ### Out-of-Scope Use
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+
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+ <!-- This section addresses misuse, malicious use, and uses that the dataset will not work well for. -->
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+
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+ <!-- [More Information Needed] -->
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+
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+ ## Dataset Structure
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+
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+ - **linear_id**: Identifier for linear peptide
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+ - **peptide_sequence**: Amino acid sequence of linear peptide
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+ - **SMILES**: SMILES string of linear peptide
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+ - **cyclic_id**: Identifier for cyclic peptide
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+ - **cysteine_to_N_cyclization**: SMILES string of cyclic peptide
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+
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+ ## Dataset Creation
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+
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+ ### Curation Rationale
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+
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+ To develop a large dataset of SMILES strings for peptides.
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+
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+ #### Data Collection and Processing
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+
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+ Data were generated using [schemist](https://github.com/scbirlab/schemist), a tool for processing chemical datasets.
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+
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+ #### Who are the source data producers?
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+
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+ Eachan Johnson ([@eachanjohnson](https://huggingface.co/eachanjohnson)).
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+
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+ #### Personal and Sensitive Information
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+
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+ None
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+
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+ <!-- ## Bias, Risks, and Limitations -->
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+
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+ <!-- This section is meant to convey both technical and sociotechnical limitations. -->
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+
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+ <!-- [More Information Needed] -->
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+
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+ <!-- ### Recommendations -->
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+
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+ <!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
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+
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+ <!-- Users should be made aware of the risks, biases and limitations of the dataset. More information needed for further recommendations. -->
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+
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+ <!-- ## Citation [optional]
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+
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+ <!-- If there is a paper or blog post introducing the dataset, the APA and Bibtex information for that should go in this section. -->
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+
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+ <!-- **BibTeX:**
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+ [More Information Needed]
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+
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+ **APA:**
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+ [More Information Needed] -->
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+ <!-- ## Glossary [optional] -->
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+
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+ <!-- If relevant, include terms and calculations in this section that can help readers understand the dataset or dataset card. -->
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+
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+ <!-- [More Information Needed]
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+
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+ <!-- ## More Information [optional]
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+
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+ <!-- [More Information Needed]
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+
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+ <!-- ## Dataset Card Authors [optional]
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+
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+ <!-- [More Information Needed] -->
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+
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+ ## Dataset Card Contact
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+
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+ [@eachanjohnson](https://huggingface.co/eachanjohnson)