cyc-pep-6-12mer-70M-2024 / validation /cyc-pep-6-12mer-70M_09.log
eachanjohnson's picture
Fix header (#2)
0436f6c verified
+ module purge
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ module load Anaconda3/2023.03
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ source /camp/home/johnsoe/.bashrc
++ '[' '' = yes ']'
++ PS1='${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '
+++ /camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda shell.bash hook
++ __conda_setup='export CONDA_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python'\''
# Copyright (C) 2012 Anaconda, Inc
# SPDX-License-Identifier: BSD-3-Clause
__conda_exe() (
"$CONDA_EXE" $_CE_M $_CE_CONDA "$@"
)
__conda_hashr() {
if [ -n "${ZSH_VERSION:+x}" ]; then
\rehash
elif [ -n "${POSH_VERSION:+x}" ]; then
: # pass
else
\hash -r
fi
}
__conda_activate() {
if [ -n "${CONDA_PS1_BACKUP:+x}" ]; then
# Handle transition from shell activated with conda <= 4.3 to a subsequent activation
# after conda updated to >= 4.4. See issue #6173.
PS1="$CONDA_PS1_BACKUP"
\unset CONDA_PS1_BACKUP
fi
\local ask_conda
ask_conda="$(PS1="${PS1:-}" __conda_exe shell.posix "$@")" || \return
\eval "$ask_conda"
__conda_hashr
}
__conda_reactivate() {
\local ask_conda
ask_conda="$(PS1="${PS1:-}" __conda_exe shell.posix reactivate)" || \return
\eval "$ask_conda"
__conda_hashr
}
conda() {
\local cmd="${1-__missing__}"
case "$cmd" in
activate|deactivate)
__conda_activate "$@"
;;
install|update|upgrade|remove|uninstall)
__conda_exe "$@" || \return
__conda_reactivate
;;
*)
__conda_exe "$@"
;;
esac
}
if [ -z "${CONDA_SHLVL+x}" ]; then
\export CONDA_SHLVL=0
# In dev-mode CONDA_EXE is python.exe and on Windows
# it is in a different relative location to condabin.
if [ -n "${_CE_CONDA:+x}" ] && [ -n "${WINDIR+x}" ]; then
PATH="$(\dirname "$CONDA_EXE")/condabin${PATH:+":${PATH}"}"
else
PATH="$(\dirname "$(\dirname "$CONDA_EXE")")/condabin${PATH:+":${PATH}"}"
fi
\export PATH
# We'\''re not allowing PS1 to be unbound. It must at least be set.
# However, we'\''re not exporting it, which can cause problems when starting a second shell
# via a first shell (i.e. starting zsh from bash).
if [ -z "${PS1+x}" ]; then
PS1=
fi
fi
conda activate base'
++ '[' 0 -eq 0 ']'
++ eval 'export CONDA_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python'\''
# Copyright (C) 2012 Anaconda, Inc
# SPDX-License-Identifier: BSD-3-Clause
__conda_exe() (
"$CONDA_EXE" $_CE_M $_CE_CONDA "$@"
)
__conda_hashr() {
if [ -n "${ZSH_VERSION:+x}" ]; then
\rehash
elif [ -n "${POSH_VERSION:+x}" ]; then
: # pass
else
\hash -r
fi
}
__conda_activate() {
if [ -n "${CONDA_PS1_BACKUP:+x}" ]; then
# Handle transition from shell activated with conda <= 4.3 to a subsequent activation
# after conda updated to >= 4.4. See issue #6173.
PS1="$CONDA_PS1_BACKUP"
\unset CONDA_PS1_BACKUP
fi
\local ask_conda
ask_conda="$(PS1="${PS1:-}" __conda_exe shell.posix "$@")" || \return
\eval "$ask_conda"
__conda_hashr
}
__conda_reactivate() {
\local ask_conda
ask_conda="$(PS1="${PS1:-}" __conda_exe shell.posix reactivate)" || \return
\eval "$ask_conda"
__conda_hashr
}
conda() {
\local cmd="${1-__missing__}"
case "$cmd" in
activate|deactivate)
__conda_activate "$@"
;;
install|update|upgrade|remove|uninstall)
__conda_exe "$@" || \return
__conda_reactivate
;;
*)
__conda_exe "$@"
;;
esac
}
if [ -z "${CONDA_SHLVL+x}" ]; then
\export CONDA_SHLVL=0
# In dev-mode CONDA_EXE is python.exe and on Windows
# it is in a different relative location to condabin.
if [ -n "${_CE_CONDA:+x}" ] && [ -n "${WINDIR+x}" ]; then
PATH="$(\dirname "$CONDA_EXE")/condabin${PATH:+":${PATH}"}"
else
PATH="$(\dirname "$(\dirname "$CONDA_EXE")")/condabin${PATH:+":${PATH}"}"
fi
\export PATH
# We'\''re not allowing PS1 to be unbound. It must at least be set.
# However, we'\''re not exporting it, which can cause problems when starting a second shell
# via a first shell (i.e. starting zsh from bash).
if [ -z "${PS1+x}" ]; then
PS1=
fi
fi
conda activate base'
+++ export CONDA_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda
+++ CONDA_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda
+++ export _CE_M=
+++ _CE_M=
+++ export _CE_CONDA=
+++ _CE_CONDA=
+++ export CONDA_PYTHON_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python
+++ CONDA_PYTHON_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python
+++ '[' -z x ']'
+++ conda activate base
+++ local cmd=activate
+++ case "$cmd" in
+++ __conda_activate activate base
+++ '[' -n '' ']'
+++ local ask_conda
++++ PS1='${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '
++++ __conda_exe shell.posix activate base
++++ /camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda shell.posix activate base
+++ ask_conda='PS1='\''(base) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '\''
export PATH='\''/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/apps/eb/software/Anaconda3/2023.09-0/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin'\''
export CONDA_PREFIX='\''/camp/apps/eb/software/Anaconda3/2023.09-0'\''
export CONDA_SHLVL='\''6'\''
export CONDA_DEFAULT_ENV='\''base'\''
export CONDA_PROMPT_MODIFIER='\''(base) '\''
export CONDA_PREFIX_5='\''/camp/home/johnsoe/.conda/envs/schemist-dev'\''
export CONDA_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python'\'''
+++ eval 'PS1='\''(base) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '\''
export PATH='\''/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/apps/eb/software/Anaconda3/2023.09-0/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin'\''
export CONDA_PREFIX='\''/camp/apps/eb/software/Anaconda3/2023.09-0'\''
export CONDA_SHLVL='\''6'\''
export CONDA_DEFAULT_ENV='\''base'\''
export CONDA_PROMPT_MODIFIER='\''(base) '\''
export CONDA_PREFIX_5='\''/camp/home/johnsoe/.conda/envs/schemist-dev'\''
export CONDA_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python'\'''
++++ PS1='(base) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '
++++ export PATH=/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/apps/eb/software/Anaconda3/2023.09-0/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin
++++ PATH=/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/apps/eb/software/Anaconda3/2023.09-0/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin
++++ export CONDA_PREFIX=/camp/apps/eb/software/Anaconda3/2023.09-0
++++ CONDA_PREFIX=/camp/apps/eb/software/Anaconda3/2023.09-0
++++ export CONDA_SHLVL=6
++++ CONDA_SHLVL=6
++++ export CONDA_DEFAULT_ENV=base
++++ CONDA_DEFAULT_ENV=base
++++ export 'CONDA_PROMPT_MODIFIER=(base) '
++++ CONDA_PROMPT_MODIFIER='(base) '
++++ export CONDA_PREFIX_5=/camp/home/johnsoe/.conda/envs/schemist-dev
++++ CONDA_PREFIX_5=/camp/home/johnsoe/.conda/envs/schemist-dev
++++ export CONDA_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda
++++ CONDA_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda
++++ export _CE_M=
++++ _CE_M=
++++ export _CE_CONDA=
++++ _CE_CONDA=
++++ export CONDA_PYTHON_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python
++++ CONDA_PYTHON_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python
+++ __conda_hashr
+++ '[' -n '' ']'
+++ '[' -n '' ']'
+++ hash -r
++ unset __conda_setup
+ conda activate schemist-dev
+ local cmd=activate
+ case "$cmd" in
+ __conda_activate activate schemist-dev
+ '[' -n '' ']'
+ local ask_conda
++ PS1='(base) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '
++ __conda_exe shell.posix activate schemist-dev
++ /camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda shell.posix activate schemist-dev
+ ask_conda='PS1='\''(schemist-dev) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '\''
export PATH='\''/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/home/johnsoe/.conda/envs/schemist-dev/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin'\''
export CONDA_PREFIX='\''/camp/home/johnsoe/.conda/envs/schemist-dev'\''
export CONDA_SHLVL='\''7'\''
export CONDA_DEFAULT_ENV='\''schemist-dev'\''
export CONDA_PROMPT_MODIFIER='\''(schemist-dev) '\''
export CONDA_PREFIX_6='\''/camp/apps/eb/software/Anaconda3/2023.09-0'\''
export CONDA_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python'\'''
+ eval 'PS1='\''(schemist-dev) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '\''
export PATH='\''/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/home/johnsoe/.conda/envs/schemist-dev/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin'\''
export CONDA_PREFIX='\''/camp/home/johnsoe/.conda/envs/schemist-dev'\''
export CONDA_SHLVL='\''7'\''
export CONDA_DEFAULT_ENV='\''schemist-dev'\''
export CONDA_PROMPT_MODIFIER='\''(schemist-dev) '\''
export CONDA_PREFIX_6='\''/camp/apps/eb/software/Anaconda3/2023.09-0'\''
export CONDA_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda'\''
export _CE_M='\'''\''
export _CE_CONDA='\'''\''
export CONDA_PYTHON_EXE='\''/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python'\'''
++ PS1='(schemist-dev) ${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '
++ export PATH=/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/home/johnsoe/.conda/envs/schemist-dev/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin
++ PATH=/camp/apps/eb/software/Anaconda3/2023.03:/camp/apps/eb/software/Anaconda3/2023.03/sbin:/camp/apps/eb/software/Anaconda3/2023.03/bin:/nemo/lab/johnsone/home/users/johnsoe/.vscode-server/cli/servers/Stable-384ff7382de624fb94dbaf6da11977bba1ecd427/server/bin/remote-cli:/camp/home/johnsoe/.conda/envs/schemist-dev/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/camp/home/johnsoe/.local/bin:/camp/home/johnsoe/bin:/camp/apps/eb/software/Anaconda3/2023.09-0/bin
++ export CONDA_PREFIX=/camp/home/johnsoe/.conda/envs/schemist-dev
++ CONDA_PREFIX=/camp/home/johnsoe/.conda/envs/schemist-dev
++ export CONDA_SHLVL=7
++ CONDA_SHLVL=7
++ export CONDA_DEFAULT_ENV=schemist-dev
++ CONDA_DEFAULT_ENV=schemist-dev
++ export 'CONDA_PROMPT_MODIFIER=(schemist-dev) '
++ CONDA_PROMPT_MODIFIER='(schemist-dev) '
++ export CONDA_PREFIX_6=/camp/apps/eb/software/Anaconda3/2023.09-0
++ CONDA_PREFIX_6=/camp/apps/eb/software/Anaconda3/2023.09-0
++ export CONDA_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda
++ CONDA_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/conda
++ export _CE_M=
++ _CE_M=
++ export _CE_CONDA=
++ _CE_CONDA=
++ export CONDA_PYTHON_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python
++ CONDA_PYTHON_EXE=/camp/apps/eb/software/Anaconda3/2023.09-0/bin/python
+ __conda_hashr
+ '[' -n '' ']'
+ '[' -n '' ']'
+ hash -r
+ CHUNK_HEAD_FILE=/nemo/lab/johnsone/home/users/johnsoe/data/datasets/rapid_6-12b/240425_rapid_6-12.tsv.gz
+ INPUT=/nemo/lab/johnsone/home/users/johnsoe/data/datasets/cyc-pep-6-12mer-70M-2024/validation/cyc-pep-6-12mer-70M_09.csv
+ COLUMN=cysteine_to_N_cyclization
+ PREFIX=cyclic_
+ AWK='1 { print $8, $1, $2, $10, $3 }'
+ '[' -z cysteine_to_N_cyclization ']'
+ '[' -z cyclic_ ']'
+ '[' -z '1 { print $8, $1, $2, $10, $3 }' ']'
+ awk -F, -v OFS=, '1 { print $8, $1, $2, $10, $3 }'
+ cat /dev/fd/63 /nemo/lab/johnsone/home/users/johnsoe/data/datasets/cyc-pep-6-12mer-70M-2024/validation/cyc-pep-6-12mer-70M_09.csv
+ gzip --best
++ head -n1
++ zcat /nemo/lab/johnsone/home/users/johnsoe/data/datasets/rapid_6-12b/240425_rapid_6-12.tsv.gz
+ schemist convert -f csv --column cysteine_to_N_cyclization --to id inchikey scaffold mwt clogp tpsa --prefix cyclic_ --options prefix=SCB-
++ tr ' ' ,
🚀 Converting between string representations with the following parameters:
subcommand: convert
output: <_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>
format: csv
input: <_io.TextIOWrapper name='<stdin>' mode='r' encoding='utf-8'>
representation: SMILES
column: cysteine_to_N_cyclization
prefix: cyclic_
to: ['id', 'inchikey', 'scaffold', 'mwt', 'clogp', 'tpsa']
options: ['prefix=SCB-']
func: <function _convert at 0x7f9e7f41f240>
0it [00:00, ?it/s] 1it [00:08, 8.74s/it] 2it [00:17, 8.76s/it] 3it [00:26, 8.79s/it] 4it [00:35, 8.80s/it] 5it [00:43, 8.81s/it] 6it [00:52, 8.80s/it] 7it [01:01, 8.75s/it] 8it [01:10, 8.73s/it] 9it [01:18, 8.76s/it] 10it [01:27, 8.76s/it] 11it [01:36, 8.77s/it] 12it [01:45, 8.80s/it] 13it [01:54, 8.80s/it] 14it [02:02, 8.77s/it] 15it [02:11, 8.77s/it] 16it [02:20, 8.75s/it] 17it [02:29, 8.75s/it] 18it [02:37, 8.79s/it] 19it [02:46, 8.79s/it] 20it [02:55, 8.79s/it] 21it [03:04, 8.79s/it] 22it [03:13, 8.77s/it] 23it [03:21, 8.78s/it] 24it [03:30, 8.78s/it] 25it [03:39, 8.79s/it] 26it [03:48, 8.75s/it] 27it [03:56, 8.73s/it] 28it [04:05, 8.73s/it] 29it [04:14, 8.74s/it] 30it [04:23, 8.77s/it] 31it [04:31, 8.76s/it] 32it [04:40, 8.76s/it] 33it [04:49, 8.79s/it] 34it [04:58, 8.77s/it] 35it [05:06, 8.77s/it] 36it [05:15, 8.80s/it] 37it [05:24, 8.81s/it] 38it [05:33, 8.81s/it] 39it [05:42, 8.79s/it] 40it [05:51, 8.81s/it] 41it [05:59, 8.81s/it] 42it [06:08, 8.82s/it] 43it [06:17, 8.83s/it] 44it [06:26, 8.80s/it] 45it [06:35, 8.80s/it] 46it [06:43, 8.77s/it] 47it [06:52, 8.75s/it] 48it [07:01, 8.77s/it] 49it [07:10, 8.76s/it] 50it [07:18, 8.75s/it] 51it [07:27, 8.72s/it] 52it [07:36, 8.72s/it] 53it [07:44, 8.73s/it] 54it [07:53, 8.72s/it] 55it [08:02, 8.73s/it] 56it [08:11, 8.74s/it] 57it [08:19, 8.72s/it] 58it [08:28, 8.71s/it] 59it [08:37, 8.69s/it] 60it [08:45, 8.68s/it] 61it [08:54, 8.73s/it] 62it [09:03, 8.75s/it] 63it [09:12, 8.75s/it] 64it [09:20, 8.72s/it] 65it [09:29, 8.72s/it] 66it [09:38, 8.74s/it] 67it [09:47, 8.74s/it] 68it [09:55, 8.78s/it] 69it [10:04, 8.79s/it] 70it [10:13, 8.78s/it] 71it [10:22, 8.78s/it] 72it [10:31, 8.77s/it] 73it [10:39, 8.76s/it] 74it [10:48, 8.74s/it] 75it [10:57, 8.74s/it] 76it [11:06, 8.77s/it] 77it [11:14, 8.79s/it] 78it [11:23, 8.79s/it] 79it [11:32, 8.77s/it] 80it [11:41, 8.72s/it] 81it [11:49, 8.72s/it] 82it [11:58, 8.75s/it] 83it [12:07, 8.74s/it] 84it [12:16, 8.75s/it] 85it [12:24, 8.75s/it] 86it [12:33, 8.74s/it] 87it [12:42, 8.71s/it] 88it [12:50, 8.72s/it] 89it [12:59, 8.74s/it] 90it [13:08, 8.75s/it] 91it [13:17, 8.76s/it] 92it [13:25, 8.75s/it] 93it [13:34, 8.73s/it] 94it [13:43, 8.74s/it] 95it [13:52, 8.74s/it] 96it [14:00, 8.75s/it] 97it [14:09, 8.73s/it] 98it [14:18, 8.74s/it] 99it [14:27, 8.73s/it] 100it [14:35, 8.74s/it] 101it [14:44, 8.75s/it] 102it [14:53, 8.75s/it] 103it [15:02, 8.74s/it] 104it [15:10, 8.73s/it] 105it [15:19, 8.74s/it] 106it [15:28, 8.75s/it] 107it [15:37, 8.74s/it] 108it [15:45, 8.76s/it] 109it [15:54, 8.75s/it] 110it [16:03, 8.75s/it] 111it [16:11, 8.72s/it] 112it [16:20, 8.72s/it] 113it [16:29, 8.72s/it] 114it [16:38, 8.74s/it] 115it [16:46, 8.73s/it] 116it [16:55, 8.73s/it] 117it [17:04, 8.71s/it] 118it [17:13, 8.71s/it] 119it [17:21, 8.71s/it] 120it [17:30, 8.71s/it] 121it [17:39, 8.72s/it] 122it [17:47, 8.70s/it] 123it [17:56, 8.69s/it] 124it [18:05, 8.67s/it] 125it [18:13, 8.68s/it] 126it [18:22, 8.69s/it] 127it [18:31, 8.71s/it] 128it [18:39, 8.68s/it] 129it [18:48, 8.69s/it] 130it [18:57, 8.69s/it] 131it [19:06, 8.70s/it] 132it [19:14, 8.70s/it] 133it [19:23, 8.71s/it] 134it [19:32, 8.70s/it] 135it [19:40, 8.70s/it] 136it [19:49, 8.67s/it] 137it [19:58, 8.68s/it] 138it [20:06, 8.69s/it] 139it [20:15, 8.70s/it] 140it [20:24, 8.69s/it] 141it [20:32, 8.69s/it] 142it [20:41, 8.68s/it] 143it [20:50, 8.68s/it] 144it [20:58, 8.69s/it] 145it [21:07, 8.69s/it] 146it [21:16, 8.69s/it] 147it [21:25, 8.68s/it] 148it [21:33, 8.69s/it] 149it [21:42, 8.68s/it] 150it [21:51, 8.68s/it] 151it [21:59, 8.67s/it] 152it [22:08, 8.69s/it] 153it [22:17, 8.68s/it] 154it [22:25, 8.71s/it] 155it [22:34, 8.70s/it] 156it [22:43, 8.70s/it] 157it [22:51, 8.68s/it] 158it [23:00, 8.69s/it] 159it [23:09, 8.69s/it] 160it [23:17, 8.68s/it] 161it [23:26, 8.68s/it] 162it [23:35, 8.70s/it] 163it [23:44, 8.68s/it] 164it [23:52, 8.66s/it] 165it [24:01, 8.66s/it] 166it [24:10, 8.70s/it] 167it [24:18, 8.73s/it] 168it [24:27, 8.72s/it] 169it [24:36, 8.71s/it] 170it [24:44, 8.70s/it] 171it [24:53, 8.70s/it] 172it [25:02, 8.68s/it] 173it [25:10, 8.68s/it] 174it [25:19, 8.68s/it] 175it [25:28, 8.67s/it] 176it [25:36, 8.67s/it] 177it [25:45, 8.68s/it] 178it [25:54, 8.67s/it] 179it [26:02, 8.68s/it] 180it [26:11, 8.66s/it] 181it [26:20, 8.65s/it] 182it [26:28, 8.64s/it] 183it [26:37, 8.65s/it] 184it [26:46, 8.63s/it] 185it [26:54, 8.64s/it] 186it [27:03, 8.64s/it] 187it [27:12, 8.63s/it] 188it [27:20, 8.64s/it] 189it [27:29, 8.64s/it] 190it [27:37, 8.63s/it] 191it [27:46, 8.62s/it] 192it [27:55, 8.61s/it] 193it [28:03, 8.60s/it] 194it [28:12, 8.61s/it] 195it [28:20, 8.61s/it] 196it [28:29, 8.62s/it] 197it [28:38, 8.62s/it] 198it [28:46, 8.64s/it] 199it [28:55, 8.66s/it] 200it [29:04, 8.66s/it] 201it [29:12, 8.66s/it] 202it [29:21, 8.66s/it] 203it [29:30, 8.66s/it] 204it [29:38, 8.66s/it] 205it [29:47, 8.66s/it] 206it [29:56, 8.64s/it] 207it [30:04, 8.65s/it] 208it [30:13, 8.65s/it] 209it [30:22, 8.65s/it] 210it [30:30, 8.66s/it] 211it [30:39, 8.68s/it] 212it [30:48, 8.66s/it] 213it [30:56, 8.65s/it] 214it [31:05, 8.67s/it] 215it [31:14, 8.66s/it] 216it [31:22, 8.67s/it] 217it [31:31, 8.69s/it] 218it [31:40, 8.67s/it] 219it [31:48, 8.67s/it] 220it [31:57, 8.66s/it] 221it [32:06, 8.64s/it] 222it [32:14, 8.65s/it] 223it [32:23, 8.65s/it] 224it [32:32, 8.65s/it] 225it [32:40, 8.65s/it] 226it [32:49, 8.66s/it] 227it [32:58, 8.65s/it] 228it [33:06, 8.66s/it] 229it [33:15, 8.64s/it] 230it [33:23, 8.64s/it] 231it [33:32, 8.63s/it] 232it [33:41, 8.64s/it] 233it [33:49, 8.64s/it] 234it [33:58, 8.65s/it] 235it [34:07, 8.65s/it] 236it [34:15, 8.66s/it] 237it [34:24, 8.65s/it] 238it [34:33, 8.66s/it] 239it [34:41, 8.65s/it] 240it [34:50, 8.66s/it] 241it [34:59, 8.65s/it] 242it [35:07, 8.64s/it] 243it [35:16, 8.64s/it] 244it [35:24, 8.62s/it] 245it [35:33, 8.64s/it] 246it [35:42, 8.62s/it] 247it [35:50, 8.63s/it] 248it [35:59, 8.62s/it] 249it [36:08, 8.62s/it] 250it [36:16, 8.62s/it] 251it [36:25, 8.61s/it] 252it [36:33, 8.61s/it] 253it [36:42, 8.62s/it] 254it [36:51, 8.64s/it] 255it [36:59, 8.64s/it] 256it [37:08, 8.64s/it] 257it [37:17, 8.64s/it] 258it [37:25, 8.62s/it] 259it [37:34, 8.63s/it] 260it [37:42, 8.63s/it] 261it [37:51, 8.64s/it] 262it [38:00, 8.63s/it] 263it [38:08, 8.61s/it] 264it [38:17, 8.61s/it] 265it [38:26, 8.62s/it] 266it [38:34, 8.62s/it] 267it [38:43, 8.62s/it] 268it [38:51, 8.62s/it] 269it [39:00, 8.62s/it] 270it [39:09, 8.63s/it] 271it [39:17, 8.64s/it] 272it [39:26, 8.65s/it] 273it [39:35, 8.64s/it] 274it [39:43, 8.67s/it] 275it [39:52, 8.65s/it] 276it [40:01, 8.66s/it] 277it [40:09, 8.64s/it] 278it [40:18, 8.64s/it] 279it [40:27, 8.63s/it] 280it [40:35, 8.66s/it] 281it [40:44, 8.64s/it] 282it [40:53, 8.65s/it] 283it [41:01, 8.65s/it] 284it [41:10, 8.65s/it] 285it [41:18, 8.64s/it] 286it [41:27, 8.65s/it] 287it [41:36, 8.66s/it] 288it [41:44, 8.67s/it] 289it [41:53, 8.66s/it] 290it [42:02, 8.66s/it] 291it [42:10, 8.64s/it] 292it [42:19, 8.64s/it] 293it [42:28, 8.64s/it] 294it [42:36, 8.63s/it] 295it [42:45, 8.62s/it] 296it [42:53, 8.61s/it] 297it [43:02, 8.64s/it] 298it [43:11, 8.66s/it] 299it [43:20, 8.67s/it] 300it [43:28, 8.66s/it] 301it [43:37, 8.65s/it] 302it [43:45, 8.64s/it] 303it [43:54, 8.63s/it] 304it [44:03, 8.63s/it] 305it [44:11, 8.63s/it] 306it [44:20, 8.62s/it] 307it [44:29, 8.61s/it] 308it [44:37, 8.62s/it] 309it [44:46, 8.63s/it] 310it [44:54, 8.64s/it] 311it [45:03, 8.64s/it] 312it [45:12, 8.64s/it] 313it [45:20, 8.66s/it] 314it [45:29, 8.66s/it] 315it [45:38, 8.64s/it] 316it [45:46, 8.63s/it] 317it [45:55, 8.64s/it] 318it [46:04, 8.62s/it] 319it [46:12, 8.64s/it] 320it [46:21, 8.63s/it] 321it [46:30, 8.64s/it] 322it [46:38, 8.64s/it] 323it [46:47, 8.66s/it] 324it [46:55, 8.65s/it] 325it [47:04, 8.64s/it] 326it [47:13, 8.65s/it] 327it [47:21, 8.65s/it] 328it [47:30, 8.65s/it] 329it [47:39, 8.68s/it] 330it [47:47, 8.66s/it] 331it [47:56, 8.66s/it] 332it [48:05, 8.66s/it] 333it [48:13, 8.67s/it] 334it [48:22, 8.66s/it] 335it [48:31, 8.69s/it] 336it [48:39, 8.68s/it] 337it [48:48, 8.66s/it] 338it [48:57, 8.70s/it] 339it [49:06, 8.69s/it] 340it [49:14, 8.68s/it] 341it [49:23, 8.69s/it] 342it [49:32, 8.70s/it] 343it [49:40, 8.67s/it] 344it [49:49, 8.69s/it] 345it [49:58, 8.68s/it] 346it [50:06, 8.68s/it] 347it [50:15, 8.67s/it] 348it [50:24, 8.66s/it] 349it [50:32, 8.65s/it] 350it [50:41, 8.67s/it] 351it [50:50, 8.66s/it] 352it [50:58, 8.66s/it] 353it [51:07, 8.65s/it] 354it [51:16, 8.65s/it] 355it [51:24, 8.67s/it] 356it [51:33, 8.66s/it] 357it [51:42, 8.67s/it] 358it [51:50, 8.69s/it] 359it [51:59, 8.66s/it] 360it [52:08, 8.67s/it] 361it [52:16, 8.65s/it] 362it [52:25, 8.67s/it] 363it [52:34, 8.67s/it] 364it [52:42, 8.67s/it] 365it [52:51, 8.65s/it] 366it [53:00, 8.65s/it] 367it [53:08, 8.64s/it] 368it [53:17, 8.62s/it] 369it [53:25, 8.61s/it] 370it [53:34, 8.59s/it] 371it [53:42, 8.60s/it] 372it [53:51, 8.61s/it] 373it [54:00, 8.63s/it] 374it [54:08, 8.62s/it] 375it [54:17, 8.61s/it] 376it [54:26, 8.63s/it] 377it [54:34, 8.63s/it] 378it [54:43, 8.63s/it] 379it [54:52, 8.64s/it] 380it [55:00, 8.64s/it] 381it [55:09, 8.63s/it] 382it [55:17, 8.63s/it] 383it [55:26, 8.63s/it] 384it [55:35, 8.63s/it] 385it [55:43, 8.64s/it] 386it [55:52, 8.62s/it] 387it [56:00, 8.61s/it] 388it [56:09, 8.60s/it] 389it [56:18, 8.65s/it] 390it [56:27, 8.66s/it] 391it [56:35, 8.67s/it] 392it [56:44, 8.68s/it] 393it [56:53, 8.67s/it] 394it [57:01, 8.67s/it] 395it [57:10, 8.66s/it] 396it [57:19, 8.66s/it] 397it [57:27, 8.67s/it] 398it [57:36, 8.66s/it] 399it [57:45, 8.68s/it] 400it [57:53, 8.67s/it] 401it [58:02, 8.67s/it] 402it [58:11, 8.69s/it] 403it [58:19, 8.68s/it] 404it [58:28, 8.68s/it] 405it [58:37, 8.69s/it] 406it [58:45, 8.67s/it] 407it [58:54, 8.65s/it] 408it [59:03, 8.64s/it] 409it [59:11, 8.64s/it] 410it [59:20, 8.65s/it] 411it [59:29, 8.65s/it] 412it [59:37, 8.65s/it] 413it [59:46, 8.65s/it] 414it [59:54, 8.64s/it] 415it [1:00:03, 8.65s/it] 416it [1:00:12, 8.65s/it] 417it [1:00:20, 8.65s/it] 418it [1:00:29, 8.66s/it] 419it [1:00:38, 8.67s/it] 420it [1:00:46, 8.66s/it] 421it [1:00:55, 8.67s/it] 422it [1:01:04, 8.66s/it] 423it [1:01:12, 8.69s/it] 424it [1:01:21, 8.68s/it] 425it [1:01:30, 8.71s/it] 426it [1:01:39, 8.72s/it] 427it [1:01:47, 8.76s/it] 428it [1:01:56, 8.76s/it] 429it [1:02:05, 8.77s/it] 430it [1:02:14, 8.83s/it] 431it [1:02:23, 8.83s/it] 432it [1:02:32, 8.87s/it] 433it [1:02:41, 8.86s/it] 434it [1:02:49, 8.82s/it] 435it [1:02:58, 8.80s/it] 436it [1:03:07, 8.78s/it] 437it [1:03:16, 8.77s/it] 438it [1:03:24, 8.76s/it] 439it [1:03:33, 8.75s/it] 440it [1:03:42, 8.80s/it] 441it [1:03:51, 8.84s/it] 442it [1:04:00, 8.79s/it] 443it [1:04:08, 8.78s/it] 444it [1:04:17, 8.77s/it] 445it [1:04:26, 8.78s/it] 446it [1:04:35, 8.76s/it] 447it [1:04:43, 8.77s/it] 448it [1:04:52, 8.79s/it] 449it [1:05:01, 8.79s/it] 450it [1:05:10, 8.77s/it] 451it [1:05:18, 8.75s/it] 452it [1:05:27, 8.74s/it] 453it [1:05:36, 8.75s/it] 454it [1:05:45, 8.74s/it] 455it [1:05:54, 8.78s/it] 456it [1:06:02, 8.77s/it] 457it [1:06:11, 8.78s/it] 458it [1:06:20, 8.77s/it] 459it [1:06:29, 8.77s/it] 460it [1:06:37, 8.77s/it] 461it [1:06:46, 8.83s/it] 462it [1:06:55, 8.93s/it] 463it [1:07:05, 8.98s/it] 464it [1:07:14, 8.97s/it] 465it [1:07:22, 8.96s/it] 466it [1:07:31, 8.92s/it] 467it [1:07:40, 8.93s/it] 468it [1:07:49, 8.94s/it] 469it [1:07:58, 8.88s/it] 470it [1:08:07, 8.89s/it] 471it [1:08:16, 8.86s/it] 472it [1:08:25, 8.87s/it] 473it [1:08:33, 8.85s/it] 474it [1:08:42, 8.84s/it] 475it [1:08:51, 8.83s/it] 476it [1:09:00, 8.81s/it] 477it [1:09:09, 8.79s/it] 478it [1:09:17, 8.79s/it] 479it [1:09:26, 8.79s/it] 480it [1:09:35, 8.79s/it] 481it [1:09:44, 8.82s/it] 482it [1:09:53, 8.83s/it] 483it [1:10:01, 8.82s/it] 484it [1:10:10, 8.85s/it] 485it [1:10:19, 8.84s/it] 486it [1:10:28, 8.87s/it] 487it [1:10:37, 8.85s/it] 488it [1:10:46, 8.82s/it] 489it [1:10:54, 8.82s/it] 490it [1:11:03, 8.83s/it] 491it [1:11:12, 8.82s/it] 492it [1:11:21, 8.79s/it] 493it [1:11:30, 8.77s/it] 494it [1:11:38, 8.76s/it] 495it [1:11:47, 8.78s/it] 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[2:17:05, 9.44s/it] 918it [2:17:14, 9.44s/it] 919it [2:17:24, 9.46s/it] 920it [2:17:33, 9.47s/it] 921it [2:17:43, 9.46s/it] 922it [2:17:52, 9.46s/it] 923it [2:18:02, 9.46s/it] 924it [2:18:11, 9.48s/it] 925it [2:18:21, 9.47s/it] 926it [2:18:30, 9.45s/it] 927it [2:18:40, 9.44s/it] 928it [2:18:49, 9.44s/it] 929it [2:18:59, 9.45s/it] 930it [2:19:08, 9.44s/it] 931it [2:19:17, 9.42s/it] 932it [2:19:27, 9.43s/it] 933it [2:19:36, 9.44s/it] 934it [2:19:46, 9.46s/it] 935it [2:19:55, 9.47s/it] 936it [2:20:05, 9.47s/it] 937it [2:20:14, 9.47s/it] 938it [2:20:24, 9.47s/it] 939it [2:20:33, 9.47s/it] 940it [2:20:43, 9.47s/it] 941it [2:20:52, 9.46s/it] 942it [2:21:01, 9.45s/it] 943it [2:21:11, 9.47s/it] 944it [2:21:20, 9.46s/it] 945it [2:21:30, 9.45s/it] 946it [2:21:39, 9.44s/it] 947it [2:21:49, 9.45s/it] 948it [2:21:58, 9.46s/it] 949it [2:22:08, 9.46s/it] 950it [2:22:17, 9.46s/it] 951it [2:22:27, 9.46s/it] 952it [2:22:36, 9.48s/it] 953it [2:22:46, 9.50s/it] 954it [2:22:55, 9.49s/it] 955it [2:23:05, 9.53s/it] 956it [2:23:14, 9.51s/it] 957it [2:23:24, 9.50s/it] 958it [2:23:33, 9.50s/it] 959it [2:23:43, 9.49s/it] 960it [2:23:52, 9.50s/it] 961it [2:24:02, 9.51s/it] 962it [2:24:11, 9.50s/it] 963it [2:24:21, 9.51s/it] 964it [2:24:30, 9.50s/it] 965it [2:24:40, 9.48s/it] 966it [2:24:49, 9.49s/it] 967it [2:24:59, 9.50s/it] 968it [2:25:08, 9.51s/it] 969it [2:25:18, 9.52s/it] 970it [2:25:27, 9.53s/it] 971it [2:25:37, 9.55s/it] 972it [2:25:46, 9.55s/it] 973it [2:25:56, 9.53s/it] 974it [2:26:05, 9.52s/it] 975it [2:26:15, 9.52s/it] 976it [2:26:24, 9.52s/it] 977it [2:26:34, 9.51s/it] 978it [2:26:44, 9.54s/it] 979it [2:26:53, 9.56s/it] 980it [2:27:03, 9.57s/it] 981it [2:27:12, 9.58s/it] 982it [2:27:22, 9.57s/it] 983it [2:27:31, 9.56s/it] 984it [2:27:41, 9.57s/it] 985it [2:27:51, 9.57s/it] 986it [2:28:00, 9.57s/it] 987it [2:28:10, 9.60s/it] 988it [2:28:19, 9.59s/it] 989it [2:28:29, 9.58s/it] 990it [2:28:39, 9.59s/it] 991it [2:28:48, 9.59s/it] 992it [2:28:58, 9.58s/it] 993it [2:29:07, 9.59s/it] 994it [2:29:17, 9.58s/it] 995it [2:29:26, 9.58s/it] 996it [2:29:36, 9.58s/it] 997it [2:29:46, 9.58s/it] 998it [2:29:55, 9.58s/it] 999it [2:30:05, 9.58s/it] 1000it [2:30:14, 9.60s/it] 1000it [2:30:14, 9.01s/it]
Error counts:
cyclic_id: 0
cyclic_inchikey: 0
cyclic_scaffold: 0
cyclic_mwt: 0
cyclic_clogp: 0
cyclic_tpsa: 0
⏰ Completed process in 2:30:34.532964
+ rm /nemo/lab/johnsone/home/users/johnsoe/data/datasets/cyc-pep-6-12mer-70M-2024/validation/cyc-pep-6-12mer-70M_09.csv