wzkariampuzha
commited on
Commit
·
485b677
1
Parent(s):
651cbe5
Update README.md
Browse files
README.md
CHANGED
@@ -81,6 +81,19 @@ The data fields are the same among all splits.
|
|
81 |
This bronze-standard dataset was created from 620 rare disease abstracts
|
82 |
Programmatic Labeling using statistical and rule-based methods (Weakly Supervised Teaching)
|
83 |
![Text Labeling](https://raw.githubusercontent.com/ncats/epi4GARD/master/EpiExtract4GARD/datasets/EpiCustomV3/Text%20Labeling4.png)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
84 |
### Curation Rationale
|
85 |
|
86 |
[More Information Needed]
|
@@ -89,7 +102,7 @@ Programmatic Labeling using statistical and rule-based methods (Weakly Supervise
|
|
89 |
|
90 |
#### Initial Data Collection and Normalization
|
91 |
|
92 |
-
|
93 |
|
94 |
### Annotations
|
95 |
|
|
|
81 |
This bronze-standard dataset was created from 620 rare disease abstracts
|
82 |
Programmatic Labeling using statistical and rule-based methods (Weakly Supervised Teaching)
|
83 |
![Text Labeling](https://raw.githubusercontent.com/ncats/epi4GARD/master/EpiExtract4GARD/datasets/EpiCustomV3/Text%20Labeling4.png)
|
84 |
+
|
85 |
+
| Evaluation Level | Entity | Precision | Recall | F1 |
|
86 |
+
|:----------------:|:------------------------:|:---------:|:------:|:-----:|
|
87 |
+
| Entity-Level | Overall | 0.559 | 0.662 | 0.606 |
|
88 |
+
| | Location | 0.597 | 0.661 | 0.627 |
|
89 |
+
| | Epidemiologic Identifier | 0.854 | 0.911 | 0.882 |
|
90 |
+
| | Epidemiologic Rate | 0.175 | 0.255 | 0.207 |
|
91 |
+
|------------------|--------------------------|-----------|--------|-------|
|
92 |
+
| Token-Level | Overall | 0.805 | 0.710 | 0.755 |
|
93 |
+
| | Location | 0.868 | 0.713 | 0.783 |
|
94 |
+
| | Epidemiologic Type | 0.908 | 0.908 | 0.908 |
|
95 |
+
| | Epidemiologic Rate | 0.739 | 0.645 | 0.689 |
|
96 |
+
|
97 |
### Curation Rationale
|
98 |
|
99 |
[More Information Needed]
|
|
|
102 |
|
103 |
#### Initial Data Collection and Normalization
|
104 |
|
105 |
+
A sample of 500 disease names were gathered from ~6061 rare diseases tracked by GARD.
|
106 |
|
107 |
### Annotations
|
108 |
|