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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGTCCCAGGCAAAACTGTTGACTGGTTGTCAGACCAGCCTGAGGCTACCTTCAGAGCTCGGCTGGATTTAGGTATTCCAGGTGACGTGCCCAAATACGACATTGTATTTATTAATGTGAGGACTCCATATAAATACCATCATTATCAGCAGTGTGAAGACCACGCCATCAAGCTTAGCATGTTGACCAAGAAAGCTTGTCTGCATCTGAATCCCGGCGGAACCTGCGTCAGCATAGGTTATGGTTACGCTGACAGGGCCAGCGAAAGCATTATTGGTGCTATAGCGCGGCAGTTCAAGTT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTGCTATAGCGCGGCAGTTCAAGTTCTCCCGGGTATGCAAACCGAAATCCTCACTTGAAGAGACAGAAGTCCTGTTTGTATTTATTGGGTACGATCGCAAGGCCCGTACGCACAATCCTTACAAGCTTTCATCTACCTTGACCAACATCTATACAGGTTCCAGACTCCACGAAGCCGGATGCGCACCCTCTTATCATGTGGTGCGAGGGGATATTGCCACGGCCACCGAAGGAGTGATCATAAATGCTGCTAACAGCAAAGGACAACCTGGCGGAGGGGTGTGCGGAGCGCTGTATAAGA | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGGGTGTGCGGAGCGCTGTATAAGAAATTCCCGGAAAGCTTCGATTTACAGCCGATCGAAGTGGGAAAAGCGCGACTGGTCAAAGGTGCAGCTAAGCATATCATTCATGCCGTAGGGCCCAACTTCAACAAAGTTTCGGAAGTTGAAGGTGACAAACAGTTGGCAGAGGCTTATGAGTCCATCGCTAAAATTGTCAACGACAACAATTACAAGTCAGTAGCGATTCCACTGTTGTCCACCGGCATCTTTTCCGGGAACAAAGATCGACTAACCCAATCATTGAACCATTTGCTGACAGCT | [
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Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATCATTGAACCATTTGCTGACAGCTTTAGACACCACTGATGCAGATGTAGCCATATACTGCAGGGACAAGAAATGGGAAATGACTCTCAAGGAAGCAGTGGCTAGGAGAGAAGCAGTGGAGGAGATATGTATATCCGACGACTCTTCGGTGACAGAACCGGATGCAGAGCTGGTGAGGGTACATCCGAAGAGTTCTTTGGCTGGAAGGAAGGGCTACAGCACAAGCGATGGCAAGACTTTCTCATATTTGGAAGGGACCAAATTTCACCAGGCGGCCAAGGATATAGCAGAAATTAATGC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCAAGGATATAGCAGAAATTAATGCCATGTGGCCCGTTGCAACGGAGGCCAATGAGCAAGTATGCATGTATATCCTTGGTGAAAGCATGAGCAGCATTAGGTCAAAATGCCCCGTCGAAGAGTCGGAAGCCTCCACACCACCTAGCACGCTGCCTTGCTTGTGCATCCATGCTATGACTCCAGAAAGAGTACAACGCCTAAAAGCCTCACGTCCAGAACAAATTACTGTGTGCTCATCCTTTCCATTGCCGAAGTATAGAATTACTGGTGTGCAGAAGATCCAGTGCTCCCAGCCTATAC | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATCCAGCTCATCCTGGTCCATTCCTCATGCATCCGACTTTGATGTGGACAGTTTATCCATCCTTGACACCCTGGAGGGAACTAGCGTGACCAGCGAGGCAGCGTCAGCCGAGACTAACTCCTACTTCGCAAGTAGCATGGAGTTTCTGGCGCGACCGGTACCTGCGCCTCGAACAGTATTCAGGAATCTTCCTCACCCCGCTCCACGCACAAGAACACCGTCACTTGCACCTTGCAGGGCCAGTTCGGGAACTAGCCTAGTTTCCACCCCGCCAGGCGTAAATAGGGTGATTACTAGAGA | [
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] | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTCTTTTCGAGCTTTAGCGGATCGGACAACTCTATTACTAGTATGGACAGTTGGTCGTCAGGACCTAGTTCACTAGAGATAGTAGACCGAAGGCAGGTGGTGGTGGCTGACGTCCATGCCGTCCAAGAGCCTGCCCCTGTTCCACCGCCAAGGCTAAAGAAGATGGCCCGCCTGGCAGCGGCAAGAATGCAGGAAGAGCCAACTCCACCGGCAAGCACCAGCTCTGCGGACGAGTCCCTTCACCTTTCTTTTGGTGGGGTATCCATGTCCTTCGGATCCCTTTTCGACGGAGAGATGGCC | [
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] | viral_gRNA | Kutchko,2018 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AGACATGAGAAATAATTGGAGAAGTGAATTATACAAATACAAGGTAGTAAAAATTGAACCCCTAGGATTAGCACCAACCAAGGCAAAAAGGAGAACAGTGCAAAGAGAAAAGAGGGCAGTAGGACTGGGAGTGATGTTCCTTGGATTCATGGGAGCAGCAGGAAGCACTATGGGCGCAGCGGCACTGACGCTGACGGTACAGGCCAGAAATCTACTCTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAAAGCTATAGAGGCGCAACAGCATCTGTTGCAACTCTCAGTCTGGGGCAT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TGTTGCAACTCTCAGTCTGGGGCATTAAACAGCTTCAGGCGCGAGTTCTTGCTGTGGAAAGGTATCTAAAGGATCAACAACTCCTAGGACTATGGGGCTGCTCTGGAAAACTCATTTGCACTACTAATGTGCCTTGGAATAATACTTGGAGTAAAAAATTAGGAACAAACCTATCCTTTTGGGATAACATGACATGGATGCAATGGGAGAAAGAGATTGATAACTACACAGAAACTATCTATGAACTTCTAACACGATCTCAGAATCAACAGGAAGTCAATGAGCAAGAATTGTTAGCTC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GTCAATGAGCAAGAATTGTTAGCTCTGGATAAATGGTCAAGCCTGTGGAATTGGTTCGATATAACACAGTGGCTGTGGTATATAAAATTATTTGTCATGATAGTAGGAGGCTTAATAGGCATAAGAATAGTTTTTGCTATGCTTTCTATAGTCAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCCCTTTCCCAGTCCGGAGGGACCCAGACAGGCCAGAAGGAATCGAAGAAGGAGGTGGAGAAAACGACAACGTCAGATCAGTGCGCTTAGTGAGCGGATTCTTAGCA | [
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Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TCTCTTGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAATAGGAGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTGAGTAACTTG | [
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Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ATGAAGGAGACAACAATGTGCTATTACATCCTATGTGCCAGCACGGACAAGAAGATGAACACAGAGAAGTGCTGATGTGGCAGTTTGACAGCCACTTGGCCCTGACACACAGAGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACAAAGGACTTTGTAAAGGGACTTTCCACAAGGGGTTGTCCGGGAGGCGTGCCTAGGGCGGGGGTAGGGAGTGGCTTGCCCTCAGAGCTGCATATAAGCAGCCGCTTCTCGCTTGTACTGGGTCTCTCTTGTTAGACCAGATCTGAGCC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AAATAGCACAAAGAGTTGGCAGAGGCATTTTGCATATACCTAGAAGAATTAGACAAGGTTTAGAAAGAGCTTTGCTATAAGATGGGAAACAAATGGTCAAAAAGTAGCCTGGTAGGATGGCCTGCAGTAAGGGACAGACTTAGAAGGACACCTCCAGCAGCAGAAGGAGTAGGGCCAGTCTCGCGAGACCTAGAGAGACATGGGGCTATAACAAGTAGGAATACTCCACAGACAAATGAGACTCTTGCCTGGTTAGAGGAGCAAAGGGACGAAGAAGTAGGATTTCCAGTAAGACCCCAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GCGCTTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGACTTGAGGAACCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTGGATAGTGAGGAGGACGCTGGAGATTGTGGGACAGAAGTTCCTCGCAGGACTGAGACTGGTGTGGGAAACCCTAACATACTTGAAGAGCATTCTCCAGTATTGGGGACAAGAGCTGAAAACTAGTGCTATAAGCTTGCTTGACGCCACAGCAATAGCAGTAGCAGAGGGAACAGATAGAATTATAGAAATAGCACAAAGAGTTGGCAGAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AGTAGGATTTCCAGTAAGACCCCAAGTGCCTTTAAGGCCCATGACCTATAAAGCGGCCTTTGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATCTACTCCCAAAGAAGGCAAGAGATCCTTGATCTCTGGGTCTATCATACACAAGGCTTCTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATACCCGGTGACCTTCGGCTGGTGCTTCAAGCTAGTGCCTGTAGATCCAACAGATGTGGAGGAAGCAAATGAAGGAGACAACAATGTGCTATT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GAAGTAAATCTAATACAGAGACTATCATTGTGCAGCTAGCTACAGCAATATATATCAATTGTACCAGACTAGGTAATAAAACCATAGAGGGCATACCTATAGGGCCAGGACAAATTTTTTATAGGACTAAAACGGTGGTAGGCGACACCAGAGGAGCAGAGTGCAGAATTAATGGGACAGCCTGGAATGAGACTCTGAGACAGGTAAAGGAGGCATTAAACAACACATATCGAAATCTCAATCTCAGTCTCACAGAAATAAACTTTGAAGGTGCATCCGGCGGAGATCTAGAAGTAACTA | [
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Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GTCTCTCTTGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAATAGGAGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTGAGTAACTTGAGCAGTGTGTGCCCATCCAATTTGTGACTCTGGTATCTAGAGATCCCTCAGATATTAAGTGTCTGTGCGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAACGAAAGTGTAACCGGAGAAGTTCTCTCGACGCAGGACTCGACTTGCTGAGTGCGCACCAGCAAGGGGCGAGGGGCCGGCGACTGGTGAGTACGCCT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGGCCGGCGACTGGTGAGTACGCCTAATTTTTGACTAGCGAAAGCTAGAAGGAGAGAGGATGGGTGCGAGAGCGTCAGTATTAACGGGAGGAAAGTTAGATGATTGGGAAAAAATTTATCTCCGGCCAGGGGGAAAGAAAAAATATATGATGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCTTGTAACCCCGGCCTAATGGACACAACAGAAGGATGTGAACAATTAATTAACCAGTTGCAGCCAGCTCTCACAACAGGATCAGAAGGACTAAGATCTTTATTTAACA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GAAGGACTAAGATCTTTATTTAACACCCTAGCAGTCCTCTGGTGCGTACATCAAAGAATTAGAGTAAAAGACACAAAAGAGGCTTTAGACAAACTAGAAGAAGTGCAGCAAAAAAGCAAAGTGAAAGTAAAACAGGAAGCCGCGGCGGCAGACCCCAGCGGCGGCGAGAGCAGAAACTTCCCGATAGTAACAAATGCTCAGGGACAAATGGTCCATCAGTCGCTCTCACCCAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCATTTAGCCCAGAAGTCATACCCATGTTT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TAGCCCAGAAGTCATACCCATGTTTATGGCTCTATCAGAAGGAGCCACCCCTCAGGATTTAAACACCATGCTAAATACAATAGGGGGACATCAGGCAGCAATGCAAATCTTAAAAGAAGTGATCAATGAGGAAGCTGCAGAGTGGGACAGGACACACCCTATACATGCAGGGCCAATTCCTCCAGGCCAAATGAGGGAACCAAGAGGAAGTGACATAGCAGGGACAACTAGCACCATTCAGGAACAAGTGGGATGGATGACCAGTAACCCTCCTACCCCGGTAGGAGACATTTACAAGAG | [
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1124
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CCCCGGTAGGAGACATTTACAAGAGATGGATAGTTTTAGGGCTTAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTCTAGATATAAAGCAAGGACCAAAAGAACCATTTAGAGATTATGTGGACAGATTTTACAAAACTCTAAGAGCTGAACAAGCAACCCAAGATGTAAAAAATTGGATGACAGAGACCTTGCTAGTGCAAAATGCCAACCCAGATTGTAAGCAAATTTTAAGAGCTCTGGGTCCAGGGGCAACCTTAGAAGAAATGATGACAGCCTGCCAGGGAGTAGGGGGCC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ACAGCCTGCCAGGGAGTAGGGGGCCCCTCTCATAAAGCCAGAGTATTGGCAGAAGCAATGAGTCAGGCAAACACCACTGTTATGATGCAAAGAGGTAATGTTAAGATTCAGAAAAGAATTGTGAAATGCTTTAACTGTGGCAAGGAAGGTCACATAGCAAGAAACTGTAGAGCCCCTAGAAGAAAAGGCTGTTGGAAATGTGGGCAAGAAGGACACCAACAGAAAAACTGCCCCGATATGCAACGGGCGAATTTTTTAGGGAAAATCTGGCCTCCCCGCAAAGGGAGGCCAGGGAATTTC | [
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1674
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CCGCAAAGGGAGGCCAGGGAATTTCCTCCAGAAGAGACCAGAACCACCAGAACCAAGTGCCCCACCAATAGAGAGTTTTGGGTTTCAGGATCAGAAAATAGATTCTCTGAAACAGGAGGTCAGGAACGAGGAACAGACAGAGAACAGACTGTACCCTCCTTTGGATTCCCTCAAATCTCTCTTTGGCAACGACCCGTTGTCGCAGCAAGAATAGGAGGAGTTATAAAAGAGGTACTATTAGACACAGGGGCAGATGATACAGTACTAGAGGAAATAGAATTAGAGGGAAAATGGAGGCCA | [
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1942,
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1944,
1945,
1946,
1947,
1948,
1949
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AGAATTAGAGGGAAAATGGAGGCCAAAAATGATAGGGGGAATTGGAGGTTTTATAAAAGTAAGACAATATGATCAGATACCCATAGAAATTTGTGGAAAAAGAGCAATAGGTACAGTATTAGTAGGGCCCACACCTGTGAATATTATAGGGAGAAATATCTTAACTCAAATTGGGTGTACTCTAAATTTTCCCATTAGCACTATAGAAACTGTACCAGTAAAATTAAAGCCAGGGATGGACGGTCCAAGAGTTAAACAGTGGCCCCTAACAGAAGAAAAAATAAAAGCATTGACAGAAAT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AAAAAATAAAAGCATTGACAGAAATTTGTACAGAGATGGAAAAGGAAGGAAAAATTTCAAGAATAGGGCCAGAAAATCCATATAATACACCAATATTTGCTATTAAGAAAAAGGATAGCACAAAATGGAGAAAATTAGTAGACTTCAGAGAATTAAATAAAAGAACCCAAGATTTTTGGGAAGTCCAGCTAGGAATACCACACCCTGCGGGACTGAAAAAGAAAAAATCAGTAACAGTGCTGGACGTAGGGGATGCTTATTTTTCATGCCCCCTAGATGAAGAGTTTAGAAAATACACTG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GATGAAGAGTTTAGAAAATACACTGCCTTCACCATACCTAGTGTAAATAATGAGACACCAGGAATAAGGTACCAGTACAATGTACTCCCGCAGGGATGGAAAGGATCACCAGCTATTTTTCAAAGCAGTATGACTAAGATTCTGGAACCTTATAGAAAACAGAATCCAGAAATAGTCATCTACCAGTACATGGATGATCTATATGTAGGATCTGATTTACATATAGAGCAACATAGAGAAAAGGTGGAAGAATTAAGAGCTCATCTATTAAAGTGGGGCTTTACTACACCTGACAAAAAG | [
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2774
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGGCTTTACTACACCTGACAAAAAGCATCAAAAAGAACCACCATTCCTTTGGATGGGATATGAGCTCCATCCAGACAAATGGACAGTCCAGCCCATACAGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAATTAGTAGGAAAGTTAAATTGGGCAAGTCAAATATATCCAGGAATTAAGGTAAAACAATTGTGTAAGCTTATTAGAGGAACAAAAGCTTTAACAGAGGTAGTTACCCTCACACAGGAAGCAGAATTAGAGTTAGCAGAAAACAGGGAGATATTAAGAGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CAGAAAACAGGGAGATATTAAGAGACCCTGTACATGGGGCCTACTATGACCCCTCAAAAGAATTGATAGCAGAAATACAGAAACAAGGTCAAGGCCAATGGACTTATCAGATTTATCAGGAACAGCATAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGAGCTGCCCATTCAAATGATGTAAAACAGTTGACTGAAGTAGTACAGAAAGTAGCCCTGGAAAGTATAGTCATCTGGGGAAAAACACCCAAGTTTAGACTGCCCATACAGAAAGAAACATGGGAGGCTTGGTGGACAG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GAAACATGGGAGGCTTGGTGGACAGATTACTGGCAAGCAACTTGGATCCCTGAATGGGAATATGTTAACACCCCTCCCCTGGTAAAGCTGTGGTACCAGTTAGAAACAGAACCCATAGTGGGGGCAGAAACCTTTTATGTAGATGGGGCAGCAAATAGAGAAACCAAATTAGGAAAAGCAGGATATGTAACTGATAGAGGGAGACAAAAGATTATCTCCCTAACAGAAACAACTAATCAAAGAGCAGAACTGCAAGCTATATACCTAGCCCTACAGGATTCAGAAGTAGAGGTAAACATA | [
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3598,
3599
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGATTCAGAAGTAGAGGTAAACATAGTTACTGACTCACAATATGCATTAGGGATCATTCAATCACAGCCTGACATTAGTGAATCAGACATAGTAAATCAGATAATAGAGCAGCTAGTGAAAAAGGAAAAGATTTATCTTTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAATAGACAAATTAGTTAGTGCAGGAATCAGGAAAGTCCTTTTCCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAACAATTGGAAAGCTATGGCAGATGAATTTAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGAAAGCTATGGCAGATGAATTTAATTTGCCACCCATAGTAGCCAAAGAAATAGTAGCCAGCTGTGATAAATGCCAATTAAAAGGAGAAGCCATGCATGGACAGGTAGACTGTAGTCCAGGAATATGGCAACTAGACTGCACACATTTAGAAGGAAAGATCATCTTAGTAGCTGTACATGTAGCCAGTGGATACATAGAGGCAGAAGTCATACCTGCTGAAACAGGGCAAGAGACAGCTTATTTTGTGCTGAAATTAGCAGGAAGATGGCCAGTAAAGGTTATACACACTGATAATGGCA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AAGGTTATACACACTGATAATGGCAGCAACTTTACTAGTGCTGCTGTCAAGGCTGCATGTTGGTGGGCAAATATCCAACAGGAATTTGGAATTCCCTACAATCCTCAGAGTCAAGGAGTAGTAGAATCAATGAACAAAGAGTTAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCAGAACATTTAAAGACAGCAGTGCAAATGGCAGTCTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATCATAGATATAATAGCAACAGATATACAAACT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TTGGTAAAACATCACATGTATGTGTCTAAAAAGGCACGAGGTTGGTTTTACAGACATCATTATGAAAGTGAGAATCCAAAAGTTAGTTCAGAAATTCACATTCCAGTAGGAGATGCCAAATTAGTAATAGTAACCTATTGGGGACTCATGCCAGGAGAAAGAGACTGGCATTTAGGACATGGGGTCTCTATAGAATGGAGACAGAAAAGATATAGCACACAAATAGATCCTGAATTGGCAGACCACCTAATTCATTTGCATTATTTTGATTGTTTTGCAGAGTCTGCCATAAGGAAAGCC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TGCAGAGTCTGCCATAAGGAAAGCCATACTAGGACAAATAGTTAGCCCTAGATGTGAATTCCCAGCAGGACACACAAAGGTAGGCACTCTACAATATTTGGCAATCTCAGCACTGCTAAAAAGGAAGCCAAAGAAACCACCTCTACCTAGTGTTAGTAAATTAGCAGAAGACAGATGGAACAAGCCCCGGAAGACCAAGGGCCACAAAGAGAGCCATACAATGAATGGACACTAGAATTATTAGATGAACTCAAACAGGAAGCAGTAAGACATTTTCCTAGACAGTGGCTTCATGATTTA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TCCTAGACAGTGGCTTCATGATTTAGGACAGCACATTTATAACACATATGGAGACACTTGGGCGGGGGTTGAGGCTATCATAAGGATCCTGCAACAATTGCTGTTTATTCATTACAGAATTGGCTGCCAACATAGCAGAATAGGCATTCTGCCACAAGGAAGAAGGAGAAATGGATCCAATAGATCCTAACTTAGAACCCTGGAATCATCCAGGAAGCCAGCCTAAAACCCCCTGTAACAATTGCTATTGTAAAATGTGTTGCTATCACTGTCAATTTTGCTTCACAAGAAAAGGCTTAG | [
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Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TTTTGCTTCACAAGAAAAGGCTTAGGAATTTACTATGGCAGGAAGAAGCGGAAGCGACGAGGAGCTACTGAGAGCAGTAAGGATCATCAAGATACTATACCAAAGCAGTAAGTAATAAGTGTAATATAATATATGGAAATATTCATAATCTTAGGACTAATAGGAATAGTTATAGAATTAGTAATAGCAATAGTAGTATGGTTAAAAGCTTATGAATGTTATAAGGCACTTAAAAGACAAGAAAGGAGAGATCAATTGATTGACAGAATAAGAGAAAGAGCAGAAGATAGTGGAAATGAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | AAGAGCAGAAGATAGTGGAAATGAAAGTGATGGGGACACAGAGGAGTTGGAAGCAATTCTTATCCCTGAGGATCGTCATGTGCTTGTGGCTATTAGGGGTTATTAGATCTGAAAATAATTTATGGGTAACAGTGTACTATGGAGTACCTGTATGGAAAGAGGCAAAAACAACTCTTTTTTGTGCATCAGACGCTAAAGCACAGATAGCTGAGGCACACAACATATGGGCTTCTCAAGCTTGTGTGCCTACAGATCCTAACCCTGAAGAAATAACGTTAGAAAATGTAACAGAAGAGTTTG | [
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Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TTAGAAAATGTAACAGAAGAGTTTGATGCATGGAACAATAACATGGTAGACCAAATGCAAGAAGATCTCATTAGCCTATGGGATCAAAGCCTAAAGCCATGTGTAAAACTGACCCCCCTCTGTGTGACCTTAAACTGTTCCACAAATACAACTACAGAGGCATCTCAGGTGCAGTATAATTGTTCTTTCAATGTAACTACAGAATTAAGAGATAAGAAGAAGCAAGTGTACTCCTTATTTTATAGAGAGGACATAACAAGTCTTGATAGCAATAAGACAGTTAAAAATGGAACTTATAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GACAGTTAAAAATGGAACTTATAGGTTAATTAACTGTAATACCACAGCCATAACCCAGGCTTGTCCAAAAACATCATTTGAACCAATTCCTATTTACTATTGTGCACCAGCTGGATTTGCCCTTTTAAAATGTAATGACCAGAATTTCAAGGGAAAAGGGACATGTAGAAATGTTAGCACAGTGCATTGTACACATGGTATTAAGCCTGTAGTCTCTACCCAATTCCTCTTGAATGGAAGCCTGGCAGAAGGAAACAAGACTGTAGTTAGGGTAAGAAGTAAATCTAATACAGAGACTAT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TCCGGCGGAGATCTAGAAGTAACTACACATTATTTCAATTGTGGAGGAGAATTCTTTTACTGTAATACATCAAACTTATTCAATCAATCCACTATTAACAATATTACACACATTCCGTGCAGAATAAGACAAATTGTAAATCAGTGGCAAGGAGTAGGAAAAGGAATCTTTGCACCTCCTATTAGAGGAACAATTCAATGTAATTCCACAATCACAGGCCTACTCTTAACAAGAGATGGTAAAAATGAGACTGAAACTTTTAGACCTACAGGAGGAGACATGAGAAATAATTGGAGAAGT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TATAATAGCAACAGATATACAAACTAGAGAACTACAAAAACAAATTTCAAAAGTTCAAAAATTTCGGGTTTATTACAGGGACAGCAGAGAACCTATCTGGAAAGGACCAGCCAAGCTTCTCTGGAAAGGTGAGGGAGCGGTAGTGCTTCAAGATAAGGAAGATATAAAAGTAGTCCCACGCAGAAAGGCTAAAATAATCAGGGACTATGGAAAACAGGTGGAAGGTAATGATTGTCTGGCAGATAGACAGGATGAGAGTTAAAGCATGGAACAGTTTGGTAAAACATCACATGTATGTGT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTC | [
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Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTAC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAGTGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | ACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAAC | [
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Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | ATTTTAGAAGTAAAAAAAAAAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAAAAAAAAAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | ATACAGAAAACAAAATATGGATGATATAGATGAGTAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGAT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGC | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAAGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCT | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGG | [
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] | viral_gRNA | Lavender,2015 |
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATA | [
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2499
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGG | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAA | [
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] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAAC | [
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1946,
1947,
1948,
1949
] | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAAAGTGGAACAATGAGACTTGGCAAG | [
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] | viral_gRNA | Lavender,2015 |
Leppek, 2021, Nluc mRNA DMS in vitro | TAATAAAAAACATTTATTTTCATTGCAATTCTAGAGCGGCCGCTTCGAGCAACCTCGAACGCTGATCTCACGCCGTGGTGAAGTTCCGCGTACGTACGGCGTC | [
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] | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Leppek, 2021, Nluc mRNA DMS in vitro | TGAGGGGATCGCCGTGTTTGACGGTAAGAAGATTACCGTCACTGGGACCCTCTGGAATGGTAACAAGATTATCGATGAGAGGCTGATCAACCCGGACGGTAGCCTGCTTTTTCGGGTGACGATCAACGGGGTCACGGGCTGGCGCCTGTGCGAGCGGATACTTGCGTGAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTG | [
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840,
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] | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Leppek, 2021, Nluc mRNA DMS in vitro | GAGCAGGGAGGAGTGTCCTCCCTGTTCCAGAACCTGGGCGTCAGTGTGACCCCGATCCAGCGCATCGTGCTGTCCGGGGAGAACGGCCTCAAAATCGATATTCATGTTATCATTCCATACGAGGGTCTCAGCGGCGATCAGATGGGGCAGATCGAGAAGATCTTCAAGGTGGTGTACCCCGTCGATGACCATCATTTCAAGGTGATCCTTCACTATGGAACGTTGGTCATCGACGGGGTCACCCCTAACATGATAGATTATTTCGGTCGGCCCTATGAGGGGATCGCCGTGTTTGACGGT | [
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Leppek, 2021, Nluc mRNA DMS in vitro | TAATAAAAAACATTTATTTTCATTGCAATTCTAGAGCGGCCGCTTCGAGCATGCTCGAACGCTGATCTCACGCCGTGGTGAAGTTCCGCGTACGTACGGCGTC | [
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Leppek, 2021, Nluc mRNA DMS in vitro | GGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGTGGCTAGTAAGCCTCGCCATCGTAACAGCCTGCGCCGGCGCCATGGCCGTCTACCCATACGATGTACCAGACTACGCCGGCTACCCCTACGACGTCCCAGACTACGCAGGCTCCTACCCATACGACGTCCCAGACTACGCAGGATCAGGCGTCTTCACACTCGAAGACTTCGTTGGAGACTGGCGACAGACAGCCGGATACAACCTAGACCAAGTCCTAGAGCAAGGAGGAGTATCCAGTTTGT | [
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] | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Mauger,2019 U_L1 nLUC mRNA | AGGATCGTAGTATGCAGCGAGAACAGCCTGCAATTTTTTATGCCTGTACTGGGGGCGCTGTTTATCGGGGTAGCGGTAGCGCCTGCGAACGACATCTACAACGAGAGGGAGCTGCTGAACAGCATGGGGATCAGCCAACCTACCGTAGTATTTGTAAGCAAAAAAGGGCTGCAAAAAATCCTGAACGTACAAAAAAAACTGCCTATCATCCAAAAAATCATCATCATGGACAGCAAAACCGACTACCAAGGGTTTCAAAGCATGTACACCTTTGTAACCAGCCACCTGCCTCCTGGGTTT | [
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562,
563,
564,
565,
566,
567,
568,
569,
570,
571,
572,
573,
574
] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | AACCAGCCACCTGCCTCCTGGGTTTAACGAGTACGACTTTGTACCTGAGAGCTTTGACAGGGACAAAACCATCGCGCTGATCATGAACAGCAGCGGGAGCACCGGGCTGCCTAAAGGGGTAGCGCTGCCTCACAGGACCGCGTGCGTAAGGTTTAGCCACGCGAGGGACCCTATCTTTGGGAACCAAATCATCCCTGACACCGCGATCCTGAGCGTAGTACCTTTTCACCACGGGTTTGGGATGTTTACCACCCTGGGGTACCTGATCTGCGGGTTTAGGGTAGTACTGATGTACAGGTT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | TTAGGGTAGTACTGATGTACAGGTTTGAGGAGGAGCTGTTTCTGAGGAGCCTGCAAGACTACAAAATCCAAAGCGCGCTGCTGGTACCTACCCTGTTTAGCTTTTTTGCGAAAAGCACCCTGATCGACAAATACGACCTGAGCAACCTGCACGAGATCGCGAGCGGGGGGGCGCCTCTGAGCAAAGAGGTAGGGGAGGCGGTAGCGAAAAGGTTTCACCTGCCTGGGATCAGGCAAGGGTACGGGCTGACCGAGACCACCAGCGCGATCCTGATCACCCCTGAGGGGGACGACAAACCTG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | ACCCCTGAGGGGGACGACAAACCTGGGGCGGTAGGGAAAGTAGTACCTTTTTTTGAGGCGAAAGTAGTAGACCTGGACACCGGGAAAACCCTGGGGGTAAACCAAAGGGGGGAGCTGTGCGTAAGGGGGCCTATGATCATGAGCGGGTACGTAAACAACCCTGAGGCGACCAACGCGCTGATCGACAAAGACGGGTGGCTGCACAGCGGGGACATCGCGTACTGGGACGAGGACGAGCACTTTTTTATCGTAGACAGGCTGAAAAGCCTGATCAAATACAAAGGGTACCAAGTAGCGCCT | [
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1399
] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | ATACAAAGGGTACCAAGTAGCGCCTGCGGAGCTGGAGAGCATCCTGCTGCAACACCCTAACATCTTTGACGCGGGGGTAGCGGGGCTGCCTGACGACGACGCGGGGGAGCTGCCTGCGGCGGTAGTAGTACTGGAGCACGGGAAAACCATGACCGAGAAAGAGATCGTAGACTACGTAGCGAGCCAAGTAACCACCGCGAAAAAACTGAGGGGGGGGGTAGTATTTGTAGACGAGGTACCTAAAGGGCTGACCGGGAAACTGGACGCGAGGAAAATCAGGGAGATCCTGATCAAAGCGAA | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | TCAGGGAGATCCTGATCAAAGCGAAAAAAGGGGGGAAAATCGCGGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCGAAAAACATCAAAAAAGGGCCTGCGCCTTTTTACCCTCTGGAGGACGGGACCGCGGGGGAGCAACTGCACAAAGCGATGAAAAGGTACGCGCTGGTACCTGGGACCATCGCGTTTACCGACGCGCACATCGAGGTAGACATCACCTACGCGGAGTACTTTGAGATGAGCGTAAGGCTGGCGGAGGCGATGAAAAGGTACGGGCTGAACACCAACCACAGGATCGTAGTATGCAGCGAGAACA | [
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Mauger,2019 U_L10 nLUC mRNA | AGAATAGTAGTATGCTCTGAGAATTCTCTACAGTTCTTCATGCCCGTACTAGGAGCACTATTCATAGGAGTAGCAGTAGCACCCGCAAATGACATATATAATGAGAGAGAGCTACTAAATTCTATGGGAATATCTCAGCCCACAGTAGTATTCGTATCTAAGAAGGGACTACAGAAGATACTAAATGTACAGAAGAAGCTACCCATAATACAGAAGATAATAATAATGGACTCTAAGACAGACTATCAGGGATTCCAGTCTATGTATACATTCGTAACATCTCACCTACCCCCCGGATTC | [
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Mauger,2019 U_L10 nLUC mRNA | AACATCTCACCTACCCCCCGGATTCAATGAGTATGACTTCGTACCCGAGTCTTTCGACAGAGACAAGACAATAGCACTAATAATGAATTCTTCTGGATCTACAGGACTACCCAAGGGAGTAGCACTACCCCACAGAACAGCATGCGTAAGATTCTCTCACGCAAGAGACCCCATATTCGGAAATCAGATAATACCCGACACAGCAATACTATCTGTAGTACCCTTCCACCACGGATTCGGAATGTTCACAACACTAGGATATCTAATATGCGGATTCAGAGTAGTACTAATGTATAGATT | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | TCAGAGTAGTACTAATGTATAGATTCGAGGAGGAGCTATTCCTAAGATCTCTACAGGACTATAAGATACAGTCTGCACTACTAGTACCCACACTATTCTCTTTCTTCGCAAAGTCTACACTAATAGACAAGTATGACCTATCTAATCTACACGAGATAGCATCTGGAGGAGCACCCCTATCTAAGGAGGTAGGAGAGGCAGTAGCAAAGAGATTCCACCTACCCGGAATAAGACAGGGATATGGACTAACAGAGACAACATCTGCAATACTAATAACACCCGAGGGAGACGACAAGCCCG | [
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] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | ACACCCGAGGGAGACGACAAGCCCGGAGCAGTAGGAAAGGTAGTACCCTTCTTCGAGGCAAAGGTAGTAGACCTAGACACAGGAAAGACACTAGGAGTAAATCAGAGAGGAGAGCTATGCGTAAGAGGACCCATGATAATGTCTGGATATGTAAATAATCCCGAGGCAACAAATGCACTAATAGACAAGGACGGATGGCTACACTCTGGAGACATAGCATATTGGGACGAGGACGAGCACTTCTTCATAGTAGACAGACTAAAGTCTCTAATAAAGTATAAGGGATATCAGGTAGCACCC | [
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1398,
1399
] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | GTATAAGGGATATCAGGTAGCACCCGCAGAGCTAGAGTCTATACTACTACAGCACCCCAATATATTCGACGCAGGAGTAGCAGGACTACCCGACGACGACGCAGGAGAGCTACCCGCAGCAGTAGTAGTACTAGAGCACGGAAAGACAATGACAGAGAAGGAGATAGTAGACTATGTAGCATCTCAGGTAACAACAGCAAAGAAGCTAAGAGGAGGAGTAGTATTCGTAGACGAGGTACCCAAGGGACTAACAGGAAAGCTAGACGCAAGAAAGATAAGAGAGATACTAATAAAGGCAAA | [
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1674
] | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | TAAGAGAGATACTAATAAAGGCAAAGAAGGGAGGAAAGATAGCAGTATGATAATAGGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
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] | mRNA | Mauger,2019 |