Upload folder using huggingface_hub

.gitattributes

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latentscope/.gitattributes

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latentscope/jobs/207cabd4-96e2-4e7d-8435-fbad0f3e9c45.json

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+{"id": "207cabd4-96e2-4e7d-8435-fbad0f3e9c45", "dataset": "ls-founders-2", "job_name": "scope", "command": "ls-scope \"ls-founders-2\" \"embedding-001\" \"umap-001\" \"cluster-001\" \"cluster-001-labels-001\" \"Founders Dataset\" \"3000 excerpts from David Senra's podcast\" --sae_id=sae-001 --scope_id=scopes-001", "status": "completed", "last_update": "2025-02-24 10:42:31.554305", "progress": ["Loading environment variables from: /Users/jimmyzhang/Development/latent-scope/.env", "DATA DIR /Users/jimmyzhang/latent-scope-data", "RUNNING: scopes-001", "umap columns Index(['x', 'y'], dtype='object')", "cluster columns Index(['cluster', 'raw_cluster', 'label'], dtype='object')", "scope_id scopes-001", "scope columns Index(['x', 'y', 'tile_index_64', 'tile_index_128', 'cluster', 'raw_cluster',", "'label', 'deleted', 'ls_index'],", "dtype='object')", "creating combined scope-input parquet", "exporting to lancedb", "Exporting scope scopes-001 to LanceDB database in /Users/jimmyzhang/latent-scope-data/ls-founders-2", "Loading scope from /Users/jimmyzhang/latent-scope-data/ls-founders-2/scopes", "Loading embeddings from /Users/jimmyzhang/latent-scope-data/ls-founders-2/embeddings/embedding-001.h5", "Converting embeddings to numpy arrays (3291, 768)", "SAE scope detected, adding metadata", "Creating table 'scopes-001'", "Creating ANN index for embeddings on table 'scopes-001'", "Partitioning into 256 partitions, 48 sub-vectors", "Creating index for cluster on table 'scopes-001'", "Creating index for sae_indices on table 'scopes-001'", "Table 'scopes-001' created successfully", "wrote scope scopes-001"], "times": ["2025-02-24 10:42:29.184650", "2025-02-24 10:42:29.185029", "2025-02-24 10:42:29.185398", "2025-02-24 10:42:29.417257", "2025-02-24 10:42:29.473980", "2025-02-24 10:42:29.474163", "2025-02-24 10:42:29.475924", "2025-02-24 10:42:29.476032", "2025-02-24 10:42:29.476106", "2025-02-24 10:42:29.479853", "2025-02-24 10:42:29.489937", "2025-02-24 10:42:31.145547", "2025-02-24 10:42:31.145716", "2025-02-24 10:42:31.148614", "2025-02-24 10:42:31.152197", "2025-02-24 10:42:31.166653", "2025-02-24 10:42:31.174058", "2025-02-24 10:42:31.211098", "2025-02-24 10:42:31.211326", "2025-02-24 10:42:31.527088", "2025-02-24 10:42:31.529302", "2025-02-24 10:42:31.551136", "2025-02-24 10:42:31.554302"], "run_id": "scopes-001"}

latentscope/jobs/42f9e278-9f57-42a2-b4af-f88c0bf66720.json

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+{"id": "42f9e278-9f57-42a2-b4af-f88c0bf66720", "dataset": "ls-founders-2", "job_name": "label", "command": "ls-label \"ls-founders-2\" \"points\" \"cluster-001\" \"\ud83e\udd17-deepseek-ai___DeepSeek-V3\" 10 \"\" --max_tokens_per_sample=512 --max_tokens_total=8192", "status": "error", "last_update": "2025-02-24 10:41:35.975515", "progress": ["Loading environment variables from: /Users/jimmyzhang/Development/latent-scope/.env", "RUNNING: cluster-001-labels-003", "Loading model \ud83e\udd17-deepseek-ai___DeepSeek-V3 (may take a while if first time downloading from HF)", "The repository for deepseek-ai/DeepSeek-V3 contains custom code which must be executed to correctly load the model. You can inspect the repository content at https://hf.co/deepseek-ai/DeepSeek-V3.", "You can avoid this prompt in future by passing the argument `trust_remote_code=True`.", "", "Do you wish to run the custom code? [y/N] Traceback (most recent call last):", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/transformers/dynamic_module_utils.py\", line 651, in resolve_trust_remote_code", "answer = input(", "^^^^^^", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/transformers/dynamic_module_utils.py\", line 632, in _raise_timeout_error", "raise ValueError(", "ValueError: Loading this model requires you to execute custom code contained in the model repository on your local machine. Please set the option `trust_remote_code=True` to permit loading of this model.", "", "During handling of the above exception, another exception occurred:", "", "Traceback (most recent call last):", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/bin/ls-label\", line 8, in <module>", "sys.exit(main())", "^^^^^^", "File \"/Users/jimmyzhang/Development/latent-scope/latentscope/scripts/label_clusters.py\", line 52, in main", "labeler(args.dataset_id, args.text_column, args.cluster_id, args.model_id, args.samples, args.context, args.rerun, args.max_tokens_per_sample, args.max_tokens_total)", "File \"/Users/jimmyzhang/Development/latent-scope/latentscope/scripts/label_clusters.py\", line 112, in labeler", "model.load_model()", "File \"/Users/jimmyzhang/Development/latent-scope/latentscope/models/providers/transformers.py\", line 42, in load_model", "self.model = self.outlines.models.transformers(self.name)", "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/outlines/models/transformers.py\", line 430, in transformers", "model = model_class.from_pretrained(model_name, **model_kwargs)", "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/transformers/models/auto/auto_factory.py\", line 526, in from_pretrained", "config, kwargs = AutoConfig.from_pretrained(", "^^^^^^^^^^^^^^^^^^^^^^^^^^^", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/transformers/models/auto/configuration_auto.py\", line 1020, in from_pretrained", "trust_remote_code = resolve_trust_remote_code(", "^^^^^^^^^^^^^^^^^^^^^^^^^^", "File \"/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/transformers/dynamic_module_utils.py\", line 664, in resolve_trust_remote_code", "raise ValueError(", "ValueError: The repository for deepseek-ai/DeepSeek-V3 contains custom code which must be executed to correctly load the model. You can inspect the repository content at https://hf.co/deepseek-ai/DeepSeek-V3.", "Please pass the argument `trust_remote_code=True` to allow custom code to be run."], "times": ["2025-02-24 10:41:18.940865", "2025-02-24 10:41:18.979078", "2025-02-24 10:41:18.979273", "2025-02-24 10:41:20.938783", "2025-02-24 10:41:20.939019", "2025-02-24 10:41:20.939147", "2025-02-24 10:41:35.944213", "2025-02-24 10:41:35.954532", "2025-02-24 10:41:35.957128", "2025-02-24 10:41:35.958588", "2025-02-24 10:41:35.958968", "2025-02-24 10:41:35.959186", "2025-02-24 10:41:35.959363", "2025-02-24 10:41:35.959540", "2025-02-24 10:41:35.959716", "2025-02-24 10:41:35.959882", "2025-02-24 10:41:35.960063", "2025-02-24 10:41:35.960203", "2025-02-24 10:41:35.960347", "2025-02-24 10:41:35.960605", "2025-02-24 10:41:35.960746", "2025-02-24 10:41:35.960885", "2025-02-24 10:41:35.961032", "2025-02-24 10:41:35.961184", "2025-02-24 10:41:35.961338", "2025-02-24 10:41:35.961481", "2025-02-24 10:41:35.961624", "2025-02-24 10:41:35.961818", "2025-02-24 10:41:35.961992", "2025-02-24 10:41:35.962340", "2025-02-24 10:41:35.968358", "2025-02-24 10:41:35.969940", "2025-02-24 10:41:35.970739", "2025-02-24 10:41:35.971477", "2025-02-24 10:41:35.972055", "2025-02-24 10:41:35.972751", "2025-02-24 10:41:35.973400", "2025-02-24 10:41:35.974426", "2025-02-24 10:41:35.974796", "2025-02-24 10:41:35.975507"], "run_id": "cluster-001-labels-003"}

latentscope/jobs/5f78f752-09c9-47ee-b1e4-49ddd3b1c7c6.json

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+{"id": "5f78f752-09c9-47ee-b1e4-49ddd3b1c7c6", "dataset": "ls-founders-2", "job_name": "upload-dataset", "command": "ls-upload-dataset \"/Users/jimmyzhang/latent-scope-data/ls-founders-2\" \"ls-founders-1\" --main-parquet=\"scopes/scopes-001-input.parquet\" --private=false", "status": "running", "last_update": "2025-02-24 10:42:51.627135", "progress": ["ARGS Namespace(directory='/Users/jimmyzhang/latent-scope-data/ls-founders-2', dataset_name='ls-founders-1', main_parquet='scopes/scopes-001-input.parquet', private='false', token=None)", "get key /Users/jimmyzhang/Development/latent-scope", "The token has not been saved to the git credentials helper. Pass `add_to_git_credential=True` in this function directly or `--add-to-git-credential` if using via `huggingface-cli` if you want to set the git credential as well.", "Token is valid (permission: write).", "Your token has been saved to /Users/jimmyzhang/.cache/huggingface/token", "Login successful", "USERNAME jzhang621", "Creating repository: ls-founders-1", "Repository created/verified: https://huggingface.co/datasets/jzhang621/ls-founders-1", "DIRECTORY /Users/jimmyzhang/latent-scope-data/ls-founders-2"], "times": ["2025-02-24 10:42:51.462758", "2025-02-24 10:42:51.462945", "2025-02-24 10:42:51.463043", "2025-02-24 10:42:51.551006", "2025-02-24 10:42:51.552192", "2025-02-24 10:42:51.552381", "2025-02-24 10:42:51.585083", "2025-02-24 10:42:51.585337", "2025-02-24 10:42:51.626667", "2025-02-24 10:42:51.627131"]}

latentscope/jobs/aee7a891-fc6b-4054-b833-6ab2f7ef7d5d.json

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+{"id": "aee7a891-fc6b-4054-b833-6ab2f7ef7d5d", "dataset": "ls-founders-2", "job_name": "sae", "command": "ls-sae \"ls-founders-2\" \"embedding-001\" \"enjalot/sae-nomic-text-v1.5-FineWeb-edu-100BT\" 64_32", "status": "completed", "last_update": "2025-02-24 10:40:35.034230", "progress": ["Loading environment variables from: /Users/jimmyzhang/Development/latent-scope/.env", "RUNNING: sae-001", "Triton not installed, using eager implementation of SAE decoder.", "loading embeddings", "", "Fetching 2 files:   0%|          | 0/2 [00:00<?, ?it/s]", "Fetching 2 files: 100%|\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588| 2/2 [00:00<00:00, 32140.26it/s]", "Dropping extra args {'signed': False}", "Encoding embeddings with SAE", "", "Encoding batches:   0%|          | 0/26 [00:00<?, ?it/s]", "Encoding batches: 100%|\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588| 26/26 [00:00<00:00, 680.29it/s]", "encoding completed", "saving to disk", "calculating summary statistics", "ALL ACTS SHAPE (3291, 64)", "ALL INDS SHAPE (3291, 64)", "MATRIX (3291, 24576)", "Number of dead features: 13684", "done with sae-001"], "times": ["2025-02-24 10:40:32.832574", "2025-02-24 10:40:32.832924", "2025-02-24 10:40:34.111252", "2025-02-24 10:40:34.306528", "2025-02-24 10:40:34.475275", "2025-02-24 10:40:34.475472", "2025-02-24 10:40:34.475619", "2025-02-24 10:40:34.476164", "2025-02-24 10:40:34.834134", "2025-02-24 10:40:34.834395", "2025-02-24 10:40:34.872707", "2025-02-24 10:40:34.872867", "2025-02-24 10:40:34.995826", "2025-02-24 10:40:34.996066", "2025-02-24 10:40:34.997417", "2025-02-24 10:40:34.997575", "2025-02-24 10:40:34.997662", "2025-02-24 10:40:35.004017", "2025-02-24 10:40:35.034108", "2025-02-24 10:40:35.034228"], "run_id": "sae-001"}

latentscope/jobs/d2ff130a-10eb-44f7-a909-2936c83f694a.json

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latentscope/jobs/e8481268-274a-4ae3-8bee-a54c95f1b322.json

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+{"id": "e8481268-274a-4ae3-8bee-a54c95f1b322", "dataset": "ls-founders-2", "job_name": "download-dataset", "command": "ls-download-dataset \"jzhang621/ls-founders-1\" \"ls-founders-2\" \"/Users/jimmyzhang/latent-scope-data\"", "status": "completed", "last_update": "2025-02-24 10:39:49.724762", "progress": ["get key /Users/jimmyzhang/Development/latent-scope", "Warning: directory /Users/jimmyzhang/latent-scope-data/ls-founders-2 already exists", "/Users/jimmyzhang/Development/latent-scope/testenv/lib/python3.12/site-packages/huggingface_hub/file_download.py:1212: UserWarning: `local_dir_use_symlinks` parameter is deprecated and will be ignored. The process to download files to a local folder has been updated and do not rely on symlinks anymore. You only need to pass a destination folder as`local_dir`.", "For more details, check out https://huggingface.co/docs/huggingface_hub/main/en/guides/download#download-files-to-local-folder.", "warnings.warn(", "", "Fetching 93 files:   0%|          | 0/93 [00:00<?, ?it/s]", "Fetching 93 files:   1%|          | 1/93 [00:00<00:09,  9.90it/s]", "Fetching 93 files:   3%|\u258e         | 3/93 [00:00<00:17,  5.11it/s]", "Fetching 93 files:  19%|\u2588\u2589        | 18/93 [00:00<00:02, 31.84it/s]", "Fetching 93 files:  27%|\u2588\u2588\u258b       | 25/93 [00:02<00:07,  8.66it/s]", "Fetching 93 files:  30%|\u2588\u2588\u2588       | 28/93 [00:03<00:08,  7.25it/s]", "Fetching 93 files: 100%|\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588| 93/93 [00:03<00:00, 28.15it/s]", "Successfully downloaded latentscope files to: /Users/jimmyzhang/latent-scope-data/ls-founders-2"], "times": ["2025-02-24 10:39:46.275300", "2025-02-24 10:39:46.275612", "2025-02-24 10:39:46.348211", "2025-02-24 10:39:46.348618", "2025-02-24 10:39:46.348713", "2025-02-24 10:39:46.349164", "2025-02-24 10:39:46.450246", "2025-02-24 10:39:46.908040", "2025-02-24 10:39:47.068975", "2025-02-24 10:39:48.871006", "2025-02-24 10:39:49.579286", "2025-02-24 10:39:49.653099", "2025-02-24 10:39:49.654153", "2025-02-24 10:39:49.724753"]}

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latentscope/scopes/scopes-002.json

@@ -9,7 +9,7 @@
   "description": "",
   "sae_id": "sae-001",
   "dataset": {
-    "id": "founders-1",
+    "id": "ls-founders-2",
     "length": 3291,
     "columns": [
       "url",

latentscope/scopes/scopes-003.json

@@ -9,7 +9,7 @@
   "description": "",
   "sae_id": "sae-001",
   "dataset": {
-    "id": "founders-1",
+    "id": "ls-founders-2",
     "length": 3291,
     "columns": [
       "url",