Update rsna-2023-abdominal-trauma-detection.py

rsna-2023-abdominal-trauma-detection.py

@@ -338,4 +338,59 @@ class RSNA2023AbdominalTraumaDetectionSegmentation(datasets.GeneratorBasedBuilde
                     },
                 }
         else:
-            pass
+            for key, (series_id, img_path) in enumerate(zip(series_ids, img_files)):
+                series_meta = (
+                    series_meta_df.loc[series_meta_df["series_id"] == series_id]
+                    .iloc[0]
+                    .to_dict()
+                )
+                patient_id = series_meta["patient_id"]
+                label_data = (
+                    labels_df.loc[labels_df["patient_id"] == patient_id]
+                    .iloc[0]
+                    .to_dict()
+                )
+
+                yield key, {
+                    "img_path": img_path,
+                    "bowel": np.argmax(
+                        [label_data["bowel_healthy"], label_data["bowel_injury"]]
+                    ),
+                    "extravasation": np.argmax(
+                        [
+                            label_data["extravasation_healthy"],
+                            label_data["extravasation_injury"],
+                        ]
+                    ),
+                    "kidney": np.argmax(
+                        [
+                            label_data["kidney_healthy"],
+                            label_data["kidney_low"],
+                            label_data["kidney_high"],
+                        ]
+                    ),
+                    "liver": np.argmax(
+                        [
+                            label_data["liver_healthy"],
+                            label_data["liver_low"],
+                            label_data["liver_high"],
+                        ]
+                    ),
+                    "spleen": np.argmax(
+                        [
+                            label_data["spleen_healthy"],
+                            label_data["spleen_low"],
+                            label_data["spleen_high"],
+                        ]
+                    ),
+                    "any_injury": label_data["any_injury"],
+                    "metadata": {
+                        "series_id": series_id,
+                        "patient_id": series_meta["patient_id"],
+                        "incomplete_organ": series_meta["incomplete_organ"],
+                        "aortic_hu": series_meta["aortic_hu"],
+                        "pixel_representation": series_meta["pixel_representation"],
+                        "bits_allocated": series_meta["bits_allocated"],
+                        "bits_stored": series_meta["bits_stored"],
+                    },
+                }