question stringlengths 39 56 | options sequencelengths 4 4 | answer stringlengths 2 12 | query_type stringclasses 3 values | target_type stringclasses 3 values | query_value stringlengths 2 14 | correct_value stringlengths 2 12 | abstracts sequencelengths 3 3 |
|---|---|---|---|---|---|---|---|
Which family does the subfamily 'HERV30-int' belong to? | [
"DNA",
"Alu",
"hAT-Tip100",
"ERV1"
] | ERV1 | Subfamily | Family | HERV30-int | ERV1 | [
"The human genome harbors numerous distinct families of so-called human endogenous retroviruses (HERV) which are remnants of exogenous retroviruses that entered the germ line millions of years ago. We describe here the hitherto little-characterized betaretrovirus HERV-K(HML-5) family (named HERVK22 in Repbase) in g... |
Which subfamily does the class 'LTR' belong to? | [
"L1PA15-16",
"MER102a",
"LTR50",
"HERVK11D-int"
] | HERVK11D-int | Class | Subfamily | LTR | HERVK11D-int | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the subfamily 'AluYb9' belong to? | [
"Alu",
"ERVL-MaLR",
"DNA",
"ERVK"
] | Alu | Subfamily | Family | AluYb9 | Alu | [
"Alu elements are the most abundant mobile elements in the human genome, with over 1 million copies and constituting more than 10% of the genome. The majority of these Alu elements were inserted into the primate genome 35 to 60 million years ago, but certain subfamilies of Alu elements are relatively very new and s... |
Which class belongs to the subfamily 'MER88'? | [
"LTR",
"SINE",
"LINE",
"DNA"
] | LTR | Subfamily | Class | MER88 | LTR | [
"The higher levels of the classification of transposable elements (TEs) from Classes to Superfamilies or Families, is regularly updated, but the lower levels (below the Family) have received little investigation. In particular, this applies to the Families that include a large number of copies. In this article we p... |
Which class belongs to the family 'hAT-Tip100'? | [
"LTR",
"DNA",
"SINE",
"LINE"
] | DNA | Family | Class | hAT-Tip100 | DNA | [
"Tip100 is an Ac-like transposable element that belongs to the hAT superfamily. First discovered in Ipomoea purpurea (common morning glory), it was classified as an autonomous element capable of movement within the genome. As Tip100 data were already available in databases, the sequences of related elements in ten ... |
Which class belongs to the family 'ERVL'? | [
"SINE",
"LTR",
"DNA",
"LINE"
] | LTR | Family | Class | ERVL | LTR | [
"Endogenous retroviruses (ERVs), which blur the boundary between virus and transposable element, are genetic material derived from retroviruses and have important implications for evolution. This study examines the diversity and evolution of human endogenous retroviruses (HERVs) of the HERVL family, which has long ... |
Which family does the subfamily 'L1P4c' belong to? | [
"ERV1",
"Alu",
"L1",
"ERVL-MaLR"
] | L1 | Subfamily | Family | L1P4c | L1 | [
"LINE-1 (L1) is a mammalian family of highly repeated DNA sequences that are members of a class of transposable elements whose movement involves an RNA intermediate. Both structural and evolutionary data indicate that the L1 family consists of a small number of active transposable elements interspersed with a large... |
Which family does the class 'DNA' belong to? | [
"ERVK",
"TcMar-Tigger",
"ERVL-MaLR",
"hAT-Charlie"
] | hAT-Charlie | Class | Family | DNA | hAT-Charlie | [
"The higher levels of the classification of transposable elements (TEs) from Classes to Superfamilies or Families, is regularly updated, but the lower levels (below the Family) have received little investigation. In particular, this applies to the Families that include a large number of copies. In this article we p... |
Which subfamily is in the family 'ERVL'? | [
"LTR41",
"MER102a",
"Tigger16a",
"L1M3f"
] | LTR41 | Family | Subfamily | ERVL | LTR41 | [
"Endogenous retroviruses (ERVs), which blur the boundary between virus and transposable element, are genetic material derived from retroviruses and have important implications for evolution. This study examines the diversity and evolution of human endogenous retroviruses (HERVs) of the HERVL family, which has long ... |
Which class belongs to the family 'TcMar-Tigger'? | [
"LINE",
"LTR",
"SINE",
"DNA"
] | DNA | Family | Class | TcMar-Tigger | DNA | [
"Tc3 of Caenorhabditis elegans is one of the founding members of the Tc1 family which includes DNA transposons in vertebrates, insects, nematodes and fungi. It is one of the best characterized eukaryotic transposons in terms of structure and transposition mechanism. A Tc3-like transposon MsqTc3 has been recently de... |
Which class belongs to the subfamily 'HUERS-P3-int'? | [
"LTR",
"SINE",
"DNA",
"LINE"
] | LTR | Subfamily | Class | HUERS-P3-int | LTR | [
"The complete DNA sequence of three independent isolates of Uhu, a member of the Tc1-like class of transposable elements from D. heteroneura (Uhu-1, Uhu-3, and Uhu-4), has been determined. These isolates have between 95 and 96.4% nucleotide sequence identity indicating that Uhu is well conserved within this species... |
Which class belongs to the family 'ERV1'? | [
"LTR",
"LINE",
"DNA",
"SINE"
] | LTR | Family | Class | ERV1 | LTR | [
"Human endogenous retroviruses (HERVs) represent the inheritance of ancient germ-line cell infections by exogenous retroviruses and the subsequent transmission of the integrated proviruses to the descendants. ERVs have the same internal structure as exogenous retroviruses. While no replication-competent HERVs have ... |
Which class belongs to the subfamily 'Charlie17b'? | [
"LTR",
"LINE",
"SINE",
"DNA"
] | DNA | Subfamily | Class | Charlie17b | DNA | [
"The higher levels of the classification of transposable elements (TEs) from Classes to Superfamilies or Families, is regularly updated, but the lower levels (below the Family) have received little investigation. In particular, this applies to the Families that include a large number of copies. In this article we p... |
Which family does the subfamily 'LTR60' belong to? | [
"hAT-Charlie",
"Gypsy",
"L1",
"ERV1"
] | ERV1 | Subfamily | Family | LTR60 | ERV1 | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which subfamily does the class 'LTR' belong to? | [
"MER20B",
"HERVKC4-int",
"MER91B",
"LTR28C"
] | LTR28C | Class | Subfamily | LTR | LTR28C | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which class belongs to the subfamily 'MER135'? | [
"LINE",
"SINE",
"LTR",
"DNA"
] | DNA | Subfamily | Class | MER135 | DNA | [
"We report a new medium reiteration frequency repeat MER53 present in human and mammalian genomes. A 189 bp MER53 consensus sequence has been reconstructed based on the computer analysis of GenBank sequences. TA target site duplication and terminal inverted repeats indicate that the MER53 repeat is a non-autonomous... |
Which class belongs to the subfamily 'HUERS-P3-int'? | [
"SINE",
"LTR",
"LINE",
"DNA"
] | LTR | Subfamily | Class | HUERS-P3-int | LTR | [
"The complete DNA sequence of three independent isolates of Uhu, a member of the Tc1-like class of transposable elements from D. heteroneura (Uhu-1, Uhu-3, and Uhu-4), has been determined. These isolates have between 95 and 96.4% nucleotide sequence identity indicating that Uhu is well conserved within this species... |
Which subfamily is in the family 'ERVL'? | [
"LTR50",
"LTR10F",
"LTR16A2",
"HERVE-int"
] | LTR16A2 | Family | Subfamily | ERVL | LTR16A2 | [
"Endogenous retroviruses (ERVs), which blur the boundary between virus and transposable element, are genetic material derived from retroviruses and have important implications for evolution. This study examines the diversity and evolution of human endogenous retroviruses (HERVs) of the HERVL family, which has long ... |
Which class belongs to the subfamily 'HUERS-P2-int'? | [
"SINE",
"DNA",
"LINE",
"LTR"
] | LTR | Subfamily | Class | HUERS-P2-int | LTR | [
"The complete DNA sequence of three independent isolates of Uhu, a member of the Tc1-like class of transposable elements from D. heteroneura (Uhu-1, Uhu-3, and Uhu-4), has been determined. These isolates have between 95 and 96.4% nucleotide sequence identity indicating that Uhu is well conserved within this species... |
Which class belongs to the subfamily 'LTR1B1'? | [
"LINE",
"SINE",
"DNA",
"LTR"
] | LTR | Subfamily | Class | LTR1B1 | LTR | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the subfamily 'LTR13A' belong to? | [
"ERVL-MaLR",
"ERVL",
"ERVK",
"hAT-Charlie"
] | ERVK | Subfamily | Family | LTR13A | ERVK | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the subfamily 'LTR22A' belong to? | [
"TcMar-Tigger",
"DNA",
"ERVK",
"ERV1"
] | ERVK | Subfamily | Family | LTR22A | ERVK | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which class belongs to the family 'ERV1'? | [
"LINE",
"LTR",
"DNA",
"SINE"
] | LTR | Family | Class | ERV1 | LTR | [
"Human endogenous retroviruses (HERVs) represent the inheritance of ancient germ-line cell infections by exogenous retroviruses and the subsequent transmission of the integrated proviruses to the descendants. ERVs have the same internal structure as exogenous retroviruses. While no replication-competent HERVs have ... |
Which subfamily is in the family 'ERVK'? | [
"LTR75B",
"LTR13A",
"LTR38A1",
"Charlie13b"
] | LTR13A | Family | Subfamily | ERVK | LTR13A | [
"The human genome harbors numerous distinct families of so-called human endogenous retroviruses (HERV) which are remnants of exogenous retroviruses that entered the germ line millions of years ago. We describe here the hitherto little-characterized betaretrovirus HERV-K(HML-5) family (named HERVK22 in Repbase) in g... |
Which class belongs to the family 'ERVL'? | [
"SINE",
"LINE",
"LTR",
"DNA"
] | LTR | Family | Class | ERVL | LTR | [
"Endogenous retroviruses (ERVs), which blur the boundary between virus and transposable element, are genetic material derived from retroviruses and have important implications for evolution. This study examines the diversity and evolution of human endogenous retroviruses (HERVs) of the HERVL family, which has long ... |
Which class belongs to the family 'hAT-Tip100'? | [
"SINE",
"LTR",
"LINE",
"DNA"
] | DNA | Family | Class | hAT-Tip100 | DNA | [
"Tip100 is an Ac-like transposable element that belongs to the hAT superfamily. First discovered in Ipomoea purpurea (common morning glory), it was classified as an autonomous element capable of movement within the genome. As Tip100 data were already available in databases, the sequences of related elements in ten ... |
Which class belongs to the subfamily 'LTR28B'? | [
"SINE",
"LINE",
"LTR",
"DNA"
] | LTR | Subfamily | Class | LTR28B | LTR | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the subfamily 'MER66C' belong to? | [
"TcMar-Tigger",
"hAT-Tip100",
"L1",
"ERV1"
] | ERV1 | Subfamily | Family | MER66C | ERV1 | [
"A second member of the divergent mori subfamily of mariner transposons, Bmmar6, is described from the silkworm moth Bombyx mori genome. A confident consensus sequence for Bmmar6 was obtained from a single genomic copy, 17 EST sequences, and the direct sequencing of a 'family' sequence from an amplification of all ... |
Which subfamily does the class 'LTR' belong to? | [
"MER20",
"LTR2C",
"HUERS-P3-int",
"ERVL47-int"
] | LTR2C | Class | Subfamily | LTR | LTR2C | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which subfamily is in the family 'ERVK'? | [
"MamGypLTR3a",
"AluYh7",
"HERVK11D-int",
"HUERS-P3b-int"
] | HERVK11D-int | Family | Subfamily | ERVK | HERVK11D-int | [
"The human genome harbors numerous distinct families of so-called human endogenous retroviruses (HERV) which are remnants of exogenous retroviruses that entered the germ line millions of years ago. We describe here the hitherto little-characterized betaretrovirus HERV-K(HML-5) family (named HERVK22 in Repbase) in g... |
Which subfamily does the class 'DNA' belong to? | [
"LTR1A2",
"LTR35A",
"Zaphod2",
"LTR4"
] | Zaphod2 | Class | Subfamily | DNA | Zaphod2 | [
"The higher levels of the classification of transposable elements (TEs) from Classes to Superfamilies or Families, is regularly updated, but the lower levels (below the Family) have received little investigation. In particular, this applies to the Families that include a large number of copies. In this article we p... |
Which class belongs to the subfamily 'HERVIP10FH-int'? | [
"LTR",
"DNA",
"LINE",
"SINE"
] | LTR | Subfamily | Class | HERVIP10FH-int | LTR | [
"Human endogenous retrovirus subfamily H (HERVH) is a class of transposable elements expressed preferentially in human embryonic stem cells (hESCs). Here, we report that the long terminal repeats of HERVH function as enhancers and that HERVH is a nuclear long noncoding RNA required to maintain hESC identity. Furthe... |
Which family does the subfamily 'MER66C' belong to? | [
"TcMar-Tigger",
"ERV1",
"DNA",
"L1"
] | ERV1 | Subfamily | Family | MER66C | ERV1 | [
"A second member of the divergent mori subfamily of mariner transposons, Bmmar6, is described from the silkworm moth Bombyx mori genome. A confident consensus sequence for Bmmar6 was obtained from a single genomic copy, 17 EST sequences, and the direct sequencing of a 'family' sequence from an amplification of all ... |
Which class belongs to the subfamily 'MLT1K-int'? | [
"DNA",
"SINE",
"LTR",
"LINE"
] | LTR | Subfamily | Class | MLT1K-int | LTR | [
"Mariner-like elements (MLE) are members from class II of transposable elements also known as DNA transposons. These elements have a wide distribution among different groups of organisms, including insects, which can be explained by horizontal and vertical gene-transfer. MLE families have been described in tephriti... |
Which class belongs to the subfamily 'PRIMAX-int'? | [
"LTR",
"SINE",
"DNA",
"LINE"
] | LTR | Subfamily | Class | PRIMAX-int | LTR | [
"Platy-1 retroposons are short interspersed elements (SINEs) unique to platyrrhine primates. Discovered in the common marmoset (Callithrix jacchus) genome in 2016, these 100 bp mobile element insertions (MEIs) appeared to be novel drivers of platyrrhine evolution, with over 2200 full-length members across 62 differ... |
Which subfamily does the class 'LTR' belong to? | [
"LTR41B",
"HERV-Fc1-int",
"MER54B",
"HERVS71-int"
] | HERVS71-int | Class | Subfamily | LTR | HERVS71-int | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the class 'LTR' belong to? | [
"ERVL",
"TcMar-Tigger",
"Alu",
"ERVK"
] | ERVK | Class | Family | LTR | ERVK | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which class belongs to the family 'ERV1'? | [
"LTR",
"LINE",
"SINE",
"DNA"
] | LTR | Family | Class | ERV1 | LTR | [
"Human endogenous retroviruses (HERVs) represent the inheritance of ancient germ-line cell infections by exogenous retroviruses and the subsequent transmission of the integrated proviruses to the descendants. ERVs have the same internal structure as exogenous retroviruses. While no replication-competent HERVs have ... |
Which family does the class 'LTR' belong to? | [
"hAT-Charlie",
"L1",
"TcMar-Tigger",
"ERVL"
] | ERVL | Class | Family | LTR | ERVL | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the class 'LTR' belong to? | [
"L1",
"Alu",
"DNA",
"ERVL"
] | ERVL | Class | Family | LTR | ERVL | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which subfamily does the class 'DNA' belong to? | [
"HERV-Fc1-int",
"LTR41B",
"Tigger16a",
"LTR1B1"
] | Tigger16a | Class | Subfamily | DNA | Tigger16a | [
"The higher levels of the classification of transposable elements (TEs) from Classes to Superfamilies or Families, is regularly updated, but the lower levels (below the Family) have received little investigation. In particular, this applies to the Families that include a large number of copies. In this article we p... |
Which class belongs to the family 'hAT-Tip100'? | [
"SINE",
"LINE",
"DNA",
"LTR"
] | DNA | Family | Class | hAT-Tip100 | DNA | [
"Tip100 is an Ac-like transposable element that belongs to the hAT superfamily. First discovered in Ipomoea purpurea (common morning glory), it was classified as an autonomous element capable of movement within the genome. As Tip100 data were already available in databases, the sequences of related elements in ten ... |
Which family does the class 'DNA' belong to? | [
"hAT-Charlie",
"L1",
"TcMar-Tigger",
"DNA"
] | hAT-Charlie | Class | Family | DNA | hAT-Charlie | [
"The higher levels of the classification of transposable elements (TEs) from Classes to Superfamilies or Families, is regularly updated, but the lower levels (below the Family) have received little investigation. In particular, this applies to the Families that include a large number of copies. In this article we p... |
Which class belongs to the family 'ERV1'? | [
"LTR",
"DNA",
"LINE",
"SINE"
] | LTR | Family | Class | ERV1 | LTR | [
"Human endogenous retroviruses (HERVs) represent the inheritance of ancient germ-line cell infections by exogenous retroviruses and the subsequent transmission of the integrated proviruses to the descendants. ERVs have the same internal structure as exogenous retroviruses. While no replication-competent HERVs have ... |
Which family does the subfamily 'LTR75B' belong to? | [
"hAT-Tip100",
"Alu",
"ERVL",
"Gypsy"
] | ERVL | Subfamily | Family | LTR75B | ERVL | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
Which family does the class 'LINE' belong to? | [
"Gypsy",
"ERVL-MaLR",
"L1",
"ERVK"
] | L1 | Class | Family | LINE | L1 | [
"LINEs are transposable elements found in various eukaryotes such as plants, protists, insects, and mammals. Their transposition is usually difficult to study, particularly in humans, where some diseases have been shown to result from LINE insertion mutations. This is due to the fact that most copies of any particu... |
Which family does the subfamily 'LTR22A' belong to? | [
"ERVK",
"TcMar-Tigger",
"DNA",
"hAT-Charlie"
] | ERVK | Subfamily | Family | LTR22A | ERVK | [
"Long terminal repeat (LTR) retrotransposons are transposable elements flanked by 5'/3' LTRs. They have a structure similar to endogenous retroviruses, but they lack the envelope (env) gene making them non-infectious. Long terminal repeats are motif-rich sequences and can act as bidirectional promoters or enhancers... |
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