Initial Commit

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+data_cna.txt filter=lfs diff=lfs merge=lfs -text
+data_log2_cna.txt filter=lfs diff=lfs merge=lfs -text
+data_methylation_hm27_hm450_merged.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem.txt filter=lfs diff=lfs merge=lfs -text
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LICENSE

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+TCGA data are available under Broad Institute GDAC TCGA Analysis Pipeline License. The Cancer Genome Atlas Consortium is pleased to provide the research community with preliminary data prior to publication. Users are requested to carefully consider that these data are preliminary and have yet to be validated. Researchers are warned that the preliminary data have a significant uncertainty, are likely to change, and should be used with caution.

README.md

@@ -1,3 +1,28 @@
----
-license: cc-by-nc-sa-4.0
----
+## Improving PanCancer Atlas Data: (transformation steps for the new data types being added)
+
+### The Timeline/Treatment data:
+
+**Data Source**
+- GDAC Firehose: https://gdac.broadinstitute.org/
+- File Used: `Merge_Clinical.Level_1.20160128` (clin.merged.txt) for each cancer type.
+
+**Data Transformation** 
+- The detailed transformation steps are listed in the Pull Request [here](https://github.com/cBioPortal/datahub/pull/1597)
+
+### The Genetic Ancestry data:
+
+
+**Data Source**
+- GDAC Firehose: https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020
+- File Used: `Admixture_by_sample.txt` (Admix percent by sample) for each cancer type.
+
+
+### The Methylation data:
+
+**Data Source**
+- GDAC Firehose: https://gdc.cancer.gov/node/977
+- File Used: `jhu-usc.edu_PANCAN_HumanMethylation450.betaValue_whitelisted.tsv` (DNA methylation 450K only beta value data matrix) for each cancer type.
+
+**Data Transformation** 
+ - The detailed transformation steps are listed in the Pull Request [here](https://github.com/cBioPortal/datahub/pull/1597)
+ - The meta info for the Infinium Illumina 450k probes used for this profile is under the folder "probe_meta" "probe_450k_mapinfo_PQ.txt" is the original download from Illumina.

case_lists/cases_RNA_Seq_v2_mRNA.txt

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+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna
+case_list_name: Samples with mRNA data (RNA Seq V2)
+case_list_description: Samples with mRNA expression data (515 samples)
+case_list_category: all_cases_with_mrna_rnaseq_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-CR-7377-01 TCGA-H7-8502-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-CR-5243-01 TCGA-UF-A7JF-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-BB-7866-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-A4CB-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A6DI-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-BA-5557-01 TCGA-CV-7089-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-P3-A6T4-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CV-7183-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-D6-A6EN-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-BB-7864-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-5361-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-WA-A7H4-01 TCGA-CR-7397-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-4722-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-7446-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-CV-A45R-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CN-6995-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A8YP-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CQ-A4CD-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-CN-4734-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-MZ-A7D7-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-7097-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-D6-A6EK-01 TCGA-CQ-6219-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-DQ-7595-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-BB-7862-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-BB-A5HU-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-P3-A6SX-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-CR-7393-01 TCGA-HD-A6I0-01 TCGA-CN-6011-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-CN-4725-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-F7-A620-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-CQ-6222-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-F7-A623-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-H7-8501-01 TCGA-CV-A6JZ-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-BB-7863-01 TCGA-CQ-7063-01 TCGA-HD-7917-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-UF-A7JC-01 TCGA-CN-5373-01 TCGA-HD-A633-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-CV-7568-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-P3-A6T2-01 TCGA-CV-6954-01 TCGA-CV-7180-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_all.txt

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+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_all
+case_list_name: All samples
+case_list_description: All samples (523 samples)
+case_list_category: all_cases_in_study
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-CN-4726-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CV-7432-01 TCGA-CQ-7064-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-BB-A5HU-01 TCGA-D6-A6EK-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-P3-A6SX-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-DQ-7593-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A8YP-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-H7-A6C5-01 TCGA-BA-5557-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-P3-A6T4-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-MT-A67G-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-IQ-A61K-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CQ-A4CD-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-6011-01 TCGA-H7-8502-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-D6-A74Q-01 TCGA-CV-7104-01 TCGA-UF-A7JC-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-BB-A6UM-01 TCGA-BB-7864-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-5361-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-CQ-A4CI-01 TCGA-BA-A6DF-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-WA-A7H4-01 TCGA-CR-7397-01 TCGA-CN-A640-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-4722-01 TCGA-CN-6021-01 TCGA-BA-A4IG-01 TCGA-P3-A6T3-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-CV-7423-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-UF-A718-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-7446-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-CV-A45R-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CN-6995-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A6DI-01 TCGA-MZ-A7D7-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CV-7183-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-CN-4727-01 TCGA-T2-A6X2-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-IQ-A61L-01 TCGA-CN-4734-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-CQ-A4CB-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-CV-A45U-01 TCGA-CV-7097-01 TCGA-CR-5247-01 TCGA-F7-A623-01 TCGA-BA-A6DG-01 TCGA-UF-A7JF-01 TCGA-CQ-6219-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-DQ-7595-01 TCGA-CR-7389-01 TCGA-UF-A719-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-BB-7862-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CQ-7068-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-CR-5243-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-BB-7866-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-CR-7393-01 TCGA-HD-A6I0-01 TCGA-CV-7089-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-H7-8501-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-CV-7180-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-TN-A7HJ-01 TCGA-CR-7367-01 TCGA-F7-A620-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-CQ-6222-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-4P-AA8J-01 TCGA-CN-4723-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-CN-A63T-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-F7-7848-01 TCGA-CN-4725-01 TCGA-CV-A6JZ-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-BB-7863-01 TCGA-CQ-7063-01 TCGA-HD-7917-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-P3-A6T2-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-D6-A6EN-01 TCGA-CN-5373-01 TCGA-HD-A633-01 TCGA-CR-7386-01 TCGA-CN-A63W-01 TCGA-CN-6010-01 TCGA-CN-A63U-01 TCGA-CV-7568-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-CR-7377-01 TCGA-CV-6954-01 TCGA-CV-6936-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-CR-7398-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-BA-5152-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-BA-A4II-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-CN-A63Y-01 TCGA-BA-A6DE-01

case_lists/cases_cna.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (517 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-CR-7377-01 TCGA-H7-8502-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-CQ-7064-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-CR-5243-01 TCGA-D6-A6EK-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-BB-7866-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-A4CB-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A6DI-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-H7-A6C5-01 TCGA-BA-5557-01 TCGA-CV-7089-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-P3-A6T4-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-MT-A67G-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-IQ-A61K-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CV-7183-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-D6-A6EN-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-BB-7864-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-BA-A6DF-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-WA-A7H4-01 TCGA-CR-7397-01 TCGA-CN-A640-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-4722-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-CV-A45R-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CN-6995-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A8YP-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CQ-A4CD-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-IQ-A61L-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-MZ-A7D7-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-7097-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-UF-A7JF-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-DQ-7595-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-BB-7862-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-BB-A5HU-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-P3-A6SX-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-CR-7393-01 TCGA-HD-A6I0-01 TCGA-CN-6011-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-CN-4725-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-F7-A620-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-F7-A623-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-H7-8501-01 TCGA-CV-A6JZ-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-BB-7863-01 TCGA-CQ-7063-01 TCGA-HD-7917-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-UF-A7JC-01 TCGA-CN-5373-01 TCGA-HD-A633-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-P3-A6T2-01 TCGA-CV-6954-01 TCGA-CV-7180-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CN-A63Y-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_cnaseq.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (496 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-P3-A6T2-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-CQ-7064-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-BB-A5HU-01 TCGA-D6-A6EK-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-A4CB-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A6DI-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-H7-A6C5-01 TCGA-BA-5557-01 TCGA-CV-7089-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-P3-A6T4-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-MT-A67G-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-IQ-A61K-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CV-7183-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-D6-A6EN-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-BA-A6DF-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-WA-A7H4-01 TCGA-CR-7397-01 TCGA-CN-A640-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-5440-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-CV-A45R-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CN-6995-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A8YP-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CQ-A4CD-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-IQ-A61L-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-MZ-A7D7-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-A6JZ-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-UF-A7JF-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-CR-5243-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-P3-A6SX-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-HD-A6I0-01 TCGA-CN-6011-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-CN-4725-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-F7-A620-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-F7-A623-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-H7-8501-01 TCGA-CV-7097-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-CQ-7063-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-UF-A7JC-01 TCGA-CN-5373-01 TCGA-HD-A633-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-CR-7377-01 TCGA-CV-6954-01 TCGA-CV-7180-01 TCGA-CR-7394-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CN-A63Y-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_complete.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_3way_complete
+case_list_name: Complete samples
+case_list_description: Samples with mutation, CNA and expression data (488 samples)
+case_list_category: all_cases_with_mutation_and_cna_and_mrna_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-P3-A6T2-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-BB-A5HU-01 TCGA-D6-A6EK-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CN-6011-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-A4CB-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A6DI-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-BA-5557-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-P3-A6T4-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CV-7183-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7416-01 TCGA-CV-7104-01 TCGA-D6-A6EN-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-WA-A7H4-01 TCGA-CR-7397-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-5440-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-CV-A45R-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CN-6995-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A8YP-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CQ-A4CD-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-MZ-A7D7-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-A6JZ-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-UF-A7JF-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-CR-5243-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-P3-A6SX-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-HD-A6I0-01 TCGA-CV-7089-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-CN-4725-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-F7-A620-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-F7-A623-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-H7-8501-01 TCGA-CV-7097-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-CQ-7063-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-UF-A7JC-01 TCGA-CN-5373-01 TCGA-HD-A633-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-CR-7377-01 TCGA-CV-6954-01 TCGA-CV-7180-01 TCGA-CR-7394-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_log2CNA.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_log2CNA
+case_list_name: Samples with log2 copy-number data
+case_list_description: Samples with log2 copy-number data (517 samples)
+case_list_category: all_cases_with_log2_cna_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-CR-7377-01 TCGA-H7-8502-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-CQ-7064-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-CR-5243-01 TCGA-D6-A6EK-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-BB-7866-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-A4CB-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A6DI-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-H7-A6C5-01 TCGA-BA-5557-01 TCGA-CV-7089-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-P3-A6T4-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-MT-A67G-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-IQ-A61K-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CV-7183-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-D6-A6EN-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-BB-7864-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-BA-A6DF-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-WA-A7H4-01 TCGA-CR-7397-01 TCGA-CN-A640-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-4722-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-CV-A45R-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CN-6995-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A8YP-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CQ-A4CD-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-IQ-A61L-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-MZ-A7D7-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-7097-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-UF-A7JF-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-DQ-7595-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-BB-7862-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-BB-A5HU-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-P3-A6SX-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-CR-7393-01 TCGA-HD-A6I0-01 TCGA-CN-6011-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-CN-4725-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-F7-A620-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-F7-A623-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-H7-8501-01 TCGA-CV-A6JZ-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-BB-7863-01 TCGA-CQ-7063-01 TCGA-HD-7917-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-UF-A7JC-01 TCGA-CN-5373-01 TCGA-HD-A633-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-P3-A6T2-01 TCGA-CV-6954-01 TCGA-CV-7180-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CN-A63Y-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_microbiome.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_microbiome
+case_list_name: Samples with microbiome data
+case_list_description: All samples with microbiome data (514 samples)
+case_list_category: other
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-UF-A7JJ-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-CV-5966-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-P3-A6T2-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CV-7432-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-BB-A5HU-01 TCGA-UF-A7JF-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-BB-7866-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CV-7180-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-A4CB-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A8YP-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CQ-7069-01 TCGA-T2-A6X0-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-BA-5557-01 TCGA-CV-7089-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-F7-A620-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CQ-A4CD-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-H7-8502-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A45U-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-F7-A622-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-UF-A7JC-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-BB-7864-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-5361-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-CN-6995-01 TCGA-CR-7397-01 TCGA-CQ-7072-01 TCGA-CR-7370-01 TCGA-RS-A6TP-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-4722-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-CV-7423-01 TCGA-CV-7415-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-7446-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-HD-A633-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-WA-A7H4-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A6DI-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CV-7183-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-P3-A6T6-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-UP-A6WW-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-T2-A6X2-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-CN-4734-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-CV-7411-01 TCGA-CR-6474-01 TCGA-MZ-A7D7-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CV-7433-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-HD-A634-01 TCGA-CV-7097-01 TCGA-CR-5247-01 TCGA-QK-AA3J-01 TCGA-BA-A6DG-01 TCGA-D6-A6EK-01 TCGA-CQ-6219-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-DQ-7595-01 TCGA-CR-7389-01 TCGA-UF-A719-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-BB-7862-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CQ-7068-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-CR-5243-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-P3-A6SX-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-CR-7393-01 TCGA-HD-A6I0-01 TCGA-CN-6011-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-H7-8501-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-TN-A7HJ-01 TCGA-CR-7367-01 TCGA-P3-A6T4-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-CQ-6222-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-4P-AA8J-01 TCGA-F7-A623-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-CN-A63T-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-CN-4725-01 TCGA-CV-A6JZ-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-CR-6487-01 TCGA-CN-4726-01 TCGA-CV-A6JN-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-F7-A61V-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-T2-A6WZ-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-CN-4723-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-BB-7863-01 TCGA-CQ-7063-01 TCGA-HD-7917-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-D6-A6EN-01 TCGA-CN-5373-01 TCGA-CV-A45R-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-CV-7568-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-CR-7377-01 TCGA-CV-6954-01 TCGA-CQ-A4CG-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CV-7421-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-CR-7398-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-P3-A6T7-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_rppa.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_rppa
+case_list_name: Samples with protein data (RPPA)
+case_list_description: Samples with protein data (RPPA) (211 samples)
+case_list_category: all_cases_with_rppa_data
+case_list_ids: TCGA-CN-4730-01 TCGA-BA-5149-01 TCGA-CV-5436-01 TCGA-CV-5966-01 TCGA-CV-6436-01 TCGA-CV-7418-01 TCGA-CN-6998-01 TCGA-CV-5443-01 TCGA-CV-7263-01 TCGA-CV-7103-01 TCGA-CN-6019-01 TCGA-CN-4741-01 TCGA-CX-7219-01 TCGA-CN-4731-01 TCGA-CN-5366-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CV-7433-01 TCGA-CV-7243-01 TCGA-CN-4723-01 TCGA-CQ-5323-01 TCGA-BA-5557-01 TCGA-CQ-5324-01 TCGA-CN-4740-01 TCGA-BA-6873-01 TCGA-CV-5434-01 TCGA-CN-5355-01 TCGA-CV-7424-01 TCGA-CN-4725-01 TCGA-CV-7255-01 TCGA-D6-6825-01 TCGA-CV-6939-01 TCGA-CX-7086-01 TCGA-CV-5971-01 TCGA-CN-4739-01 TCGA-CV-6951-01 TCGA-CQ-6228-01 TCGA-CV-6933-01 TCGA-CV-6003-01 TCGA-CN-6988-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-CV-7183-01 TCGA-CV-5440-01 TCGA-CV-7102-01 TCGA-CQ-5332-01 TCGA-CV-7261-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-CV-6934-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-CV-6954-01 TCGA-CV-5970-01 TCGA-CV-7254-01 TCGA-CN-4727-01 TCGA-CV-7423-01 TCGA-CN-5359-01 TCGA-BA-5555-01 TCGA-CN-4733-01 TCGA-CN-6024-01 TCGA-CQ-7065-01 TCGA-CV-6938-01 TCGA-CN-4729-01 TCGA-CN-6011-01 TCGA-CN-4734-01 TCGA-CN-4726-01 TCGA-CN-4737-01 TCGA-CV-6441-01 TCGA-BA-5153-01 TCGA-CV-5441-01 TCGA-CV-5976-01 TCGA-CV-6935-01 TCGA-CV-7440-01 TCGA-CV-7407-01 TCGA-CV-7099-01 TCGA-BA-5556-01 TCGA-CV-6948-01 TCGA-CN-5356-01 TCGA-CV-6945-01 TCGA-CV-7178-01 TCGA-CN-5374-01 TCGA-CN-4722-01 TCGA-CV-7414-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-BA-5559-01 TCGA-CV-7252-01 TCGA-CN-5360-01 TCGA-CV-7095-01 TCGA-CV-5432-01 TCGA-CV-7097-01 TCGA-CX-7085-01 TCGA-CV-6942-01 TCGA-CQ-6227-01 TCGA-CN-5361-01 TCGA-CV-5979-01 TCGA-CN-6013-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-CV-5431-01 TCGA-CQ-6219-01 TCGA-CV-6952-01 TCGA-CV-6959-01 TCGA-CV-6433-01 TCGA-CQ-6220-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-CQ-6218-01 TCGA-CV-7253-01 TCGA-D6-6827-01 TCGA-CV-7413-01 TCGA-CV-5973-01 TCGA-CQ-6225-01 TCGA-CN-6010-01 TCGA-BA-5151-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CV-5444-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-7416-01 TCGA-CN-6995-01 TCGA-CQ-6224-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-BA-5152-01 TCGA-CV-7411-01 TCGA-CV-5430-01 TCGA-CV-6936-01 TCGA-IQ-7630-01 TCGA-CV-5439-01 TCGA-CN-5373-01 TCGA-CN-6997-01 TCGA-CN-6023-01 TCGA-CV-7434-01 TCGA-BA-6870-01 TCGA-CN-6021-01 TCGA-CN-6992-01 TCGA-CV-7089-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-CV-7425-01 TCGA-CV-5442-01 TCGA-CQ-6229-01 TCGA-BB-4217-01 TCGA-CQ-5334-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-CV-7415-01 TCGA-CV-7427-01 TCGA-CV-7180-01 TCGA-CV-5977-01 TCGA-CN-5364-01 TCGA-CV-5978-01 TCGA-CV-6961-01 TCGA-CN-5367-01 TCGA-CV-7177-01 TCGA-CV-7446-01 TCGA-CV-6950-01 TCGA-CV-7435-01 TCGA-CV-7090-01 TCGA-CN-6012-01 TCGA-CV-7428-01 TCGA-CV-7421-01 TCGA-CV-7429-01 TCGA-IQ-7632-01 TCGA-CN-4728-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-6953-01 TCGA-CQ-5326-01 TCGA-CN-6020-01 TCGA-CV-7248-01 TCGA-CV-7430-01 TCGA-CV-7101-01 TCGA-CN-4742-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CV-7422-01 TCGA-CV-7104-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-CV-7236-01 TCGA-BA-6872-01 TCGA-CN-5365-01 TCGA-CV-7438-01 TCGA-CQ-5325-01 TCGA-CV-7437-01 TCGA-CQ-6222-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-4074-01 TCGA-CV-7568-01

case_lists/cases_sequenced.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (515 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-P3-A6T2-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-CQ-7064-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-F7-A622-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-BB-A5HU-01 TCGA-UF-A7JF-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-P3-A6SX-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A8YP-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CV-7433-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-H7-A6C5-01 TCGA-BA-5557-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-F7-A620-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-MT-A67G-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-IQ-A61K-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CQ-A4CD-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-6011-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-P3-A6T6-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-UF-A7JC-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-5361-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-BA-A6DF-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-F7-A61V-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-CN-6995-01 TCGA-CR-7397-01 TCGA-CN-A640-01 TCGA-UP-A6WW-01 TCGA-CR-7370-01 TCGA-CV-7411-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-BA-5151-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-7446-01 TCGA-F7-A623-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-HD-A633-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-WA-A7H4-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A6DI-01 TCGA-MZ-A7D7-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CV-7183-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-CQ-7072-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-IQ-A61L-01 TCGA-CN-4734-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-RS-A6TP-01 TCGA-CR-6474-01 TCGA-CQ-A4CB-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CQ-7069-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-A6JZ-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-D6-A6EK-01 TCGA-CQ-6219-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-CR-5243-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-BB-7866-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-HD-A6I0-01 TCGA-CV-7089-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-H7-8501-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-P3-A6T4-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-CQ-6222-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-P3-A6T7-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-CN-4725-01 TCGA-CV-7097-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-CV-6954-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-CQ-7063-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-D6-A6EN-01 TCGA-CN-5373-01 TCGA-CV-A45R-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-CV-7568-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-CR-7377-01 TCGA-CV-7180-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CN-A63Y-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

case_lists/cases_sv.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_sv
+case_list_name: Samples with SV data
+case_list_description: All samples (515 samples)
+case_list_category: all_cases_with_sv_data
+case_list_ids: TCGA-CV-A45Q-01 TCGA-BA-5149-01 TCGA-CV-5966-01 TCGA-CR-6467-01 TCGA-T2-A6WX-01 TCGA-IQ-A61O-01 TCGA-CN-6998-01 TCGA-CN-6019-01 TCGA-UF-A7JJ-01 TCGA-CN-5366-01 TCGA-MT-A67A-01 TCGA-CX-7085-01 TCGA-CQ-6220-01 TCGA-CV-A45Y-01 TCGA-QK-A8ZB-01 TCGA-CQ-7071-01 TCGA-CN-5355-01 TCGA-P3-A6T2-01 TCGA-CR-5250-01 TCGA-DQ-5624-01 TCGA-CN-A641-01 TCGA-CV-6933-01 TCGA-DQ-7596-01 TCGA-CV-6003-01 TCGA-CV-5970-01 TCGA-CV-7102-01 TCGA-H7-A6C4-01 TCGA-F7-A624-01 TCGA-H7-A76A-01 TCGA-CR-7401-01 TCGA-CQ-6218-01 TCGA-CV-6940-01 TCGA-CQ-7068-01 TCGA-CQ-7064-01 TCGA-BA-7269-01 TCGA-CV-7254-01 TCGA-CV-7425-01 TCGA-P3-A6T5-01 TCGA-BB-4227-01 TCGA-CQ-5333-01 TCGA-CV-6950-01 TCGA-QK-A652-01 TCGA-CN-4733-01 TCGA-BB-A5HZ-01 TCGA-P3-A5QE-01 TCGA-CR-6481-01 TCGA-F7-A622-01 TCGA-CN-4737-01 TCGA-CQ-A4CA-01 TCGA-MZ-A5BI-01 TCGA-CV-5976-01 TCGA-CV-6441-01 TCGA-CV-7440-01 TCGA-CV-6948-01 TCGA-BB-A5HU-01 TCGA-UF-A7JF-01 TCGA-CV-6945-01 TCGA-CR-7382-01 TCGA-P3-A6SX-01 TCGA-CN-A497-01 TCGA-CR-7376-01 TCGA-CV-A6K0-01 TCGA-CV-6937-01 TCGA-DQ-7592-01 TCGA-F7-A50J-01 TCGA-CR-7372-01 TCGA-WA-A7GZ-01 TCGA-CV-7413-01 TCGA-CQ-A4CG-01 TCGA-MZ-A6I9-01 TCGA-CQ-6225-01 TCGA-CV-A464-01 TCGA-HD-A6HZ-01 TCGA-IQ-7631-01 TCGA-BB-7872-01 TCGA-F7-8298-01 TCGA-CR-5248-01 TCGA-CV-A460-01 TCGA-CV-7416-01 TCGA-CN-A49A-01 TCGA-CV-7245-01 TCGA-CV-7250-01 TCGA-CV-6960-01 TCGA-CR-6491-01 TCGA-CN-5374-01 TCGA-CR-6471-01 TCGA-P3-A6SW-01 TCGA-BA-6870-01 TCGA-CV-5443-01 TCGA-CN-6016-01 TCGA-D6-6516-01 TCGA-CV-7235-01 TCGA-BA-5153-01 TCGA-CQ-6229-01 TCGA-CN-5363-01 TCGA-CV-7238-01 TCGA-CN-6994-01 TCGA-CV-6955-01 TCGA-P3-A5Q6-01 TCGA-IQ-A6SG-01 TCGA-BA-A6DD-01 TCGA-QK-A64Z-01 TCGA-CN-5367-01 TCGA-CV-7090-01 TCGA-D6-A74Q-01 TCGA-CR-6484-01 TCGA-CQ-5329-01 TCGA-CN-6018-01 TCGA-CV-A6JM-01 TCGA-D6-6825-01 TCGA-CN-6020-01 TCGA-D6-A6EP-01 TCGA-CV-6959-01 TCGA-CV-A6JD-01 TCGA-CV-5430-01 TCGA-TN-A7HL-01 TCGA-CV-7437-01 TCGA-CN-4742-01 TCGA-CQ-A4C9-01 TCGA-CV-7418-01 TCGA-CV-7263-01 TCGA-UF-A7JS-01 TCGA-CR-6488-01 TCGA-CN-4731-01 TCGA-BA-A8YP-01 TCGA-CR-7392-01 TCGA-CV-7100-01 TCGA-BA-6869-01 TCGA-CV-7433-01 TCGA-CV-7421-01 TCGA-CV-A45O-01 TCGA-CQ-5323-01 TCGA-H7-A6C5-01 TCGA-BA-5557-01 TCGA-DQ-5629-01 TCGA-CV-7427-01 TCGA-CV-7255-01 TCGA-CV-6939-01 TCGA-F7-A620-01 TCGA-CV-5971-01 TCGA-CV-6951-01 TCGA-CX-7219-01 TCGA-CQ-5327-01 TCGA-CN-6989-01 TCGA-D6-6823-01 TCGA-D6-A6EO-01 TCGA-MT-A67G-01 TCGA-BA-A6DA-01 TCGA-CR-6480-01 TCGA-CV-5435-01 TCGA-F7-A61W-01 TCGA-CQ-5332-01 TCGA-IQ-A61K-01 TCGA-H7-7774-01 TCGA-UF-A7JD-01 TCGA-CR-7368-01 TCGA-CX-A4AQ-01 TCGA-CQ-A4CD-01 TCGA-CR-7374-01 TCGA-CV-A45W-01 TCGA-CN-6024-01 TCGA-KU-A6H7-01 TCGA-CR-7364-01 TCGA-CN-6011-01 TCGA-CN-4726-01 TCGA-UF-A71B-01 TCGA-CR-7383-01 TCGA-CQ-A4C6-01 TCGA-BB-4223-01 TCGA-CV-6935-01 TCGA-QK-A6IJ-01 TCGA-T3-A92N-01 TCGA-HD-7754-01 TCGA-CN-A49C-01 TCGA-CV-A6K1-01 TCGA-P3-A6T0-01 TCGA-P3-A6T6-01 TCGA-CV-6941-01 TCGA-CN-4735-01 TCGA-UF-A7JH-01 TCGA-DQ-7593-01 TCGA-CV-7104-01 TCGA-UF-A7JC-01 TCGA-TN-A7HI-01 TCGA-BB-4225-01 TCGA-CQ-A4CI-01 TCGA-CR-6477-01 TCGA-HD-A4C1-01 TCGA-CN-5361-01 TCGA-CN-6013-01 TCGA-BB-A5HY-01 TCGA-CN-4739-01 TCGA-CN-A498-01 TCGA-D6-A4Z9-01 TCGA-BB-A6UM-01 TCGA-BA-A6DF-01 TCGA-D6-6827-01 TCGA-QK-A6IH-01 TCGA-CV-5442-01 TCGA-BA-A4IF-01 TCGA-F7-A61V-01 TCGA-BA-4078-01 TCGA-BA-6871-01 TCGA-CN-5370-01 TCGA-CN-6017-01 TCGA-IQ-A61G-01 TCGA-CN-6995-01 TCGA-CR-7397-01 TCGA-CN-A640-01 TCGA-UP-A6WW-01 TCGA-CR-7370-01 TCGA-CV-7411-01 TCGA-IQ-7630-01 TCGA-BA-A6DB-01 TCGA-CN-6023-01 TCGA-CN-6021-01 TCGA-CN-A63W-01 TCGA-CN-4727-01 TCGA-QK-A8ZA-01 TCGA-DQ-7589-01 TCGA-CN-A63V-01 TCGA-T2-A6X2-01 TCGA-CV-7415-01 TCGA-BA-5151-01 TCGA-UF-A7JO-01 TCGA-CN-5359-01 TCGA-CN-A63U-01 TCGA-CV-5978-01 TCGA-D6-8568-01 TCGA-HD-8314-01 TCGA-CV-7177-01 TCGA-CV-7446-01 TCGA-F7-A623-01 TCGA-CV-5440-01 TCGA-CV-7428-01 TCGA-CV-6953-01 TCGA-HD-8224-01 TCGA-HD-7831-01 TCGA-IQ-A6SH-01 TCGA-KU-A6H8-01 TCGA-CV-7101-01 TCGA-HD-A633-01 TCGA-CR-6473-01 TCGA-QK-A8Z8-01 TCGA-CN-5365-01 TCGA-MT-A7BN-01 TCGA-CR-7391-01 TCGA-CQ-5326-01 TCGA-BA-4074-01 TCGA-CN-4730-01 TCGA-UF-A7JK-01 TCGA-KU-A66T-01 TCGA-F7-8489-01 TCGA-CV-6956-01 TCGA-CN-5369-01 TCGA-WA-A7H4-01 TCGA-DQ-5631-01 TCGA-CQ-6227-01 TCGA-HL-7533-01 TCGA-CV-A45Z-01 TCGA-CN-4740-01 TCGA-BA-A6DL-01 TCGA-CV-5434-01 TCGA-CR-7369-01 TCGA-CX-7086-01 TCGA-F7-A61S-01 TCGA-BA-A6DI-01 TCGA-MZ-A7D7-01 TCGA-CN-6988-01 TCGA-CQ-6223-01 TCGA-CR-7365-01 TCGA-QK-A6IG-01 TCGA-CN-A6V1-01 TCGA-CV-7183-01 TCGA-CV-A45T-01 TCGA-P3-A5QF-01 TCGA-CV-7261-01 TCGA-CN-A6V7-01 TCGA-CV-6934-01 TCGA-CR-7404-01 TCGA-CR-6478-01 TCGA-CQ-7072-01 TCGA-UF-A7J9-01 TCGA-P3-A6T3-01 TCGA-CV-7423-01 TCGA-CR-6492-01 TCGA-BA-5555-01 TCGA-CV-A468-01 TCGA-C9-A480-01 TCGA-RS-A6TO-01 TCGA-CV-6938-01 TCGA-IQ-A61L-01 TCGA-CN-4734-01 TCGA-CV-A6JO-01 TCGA-BB-4224-01 TCGA-CN-A49B-01 TCGA-RS-A6TP-01 TCGA-CR-6474-01 TCGA-CQ-A4CB-01 TCGA-CV-7099-01 TCGA-D6-A6EM-01 TCGA-CN-A499-01 TCGA-CR-7379-01 TCGA-QK-A6V9-01 TCGA-CR-6482-01 TCGA-CN-5356-01 TCGA-CV-A6JT-01 TCGA-CV-7406-01 TCGA-D6-6826-01 TCGA-CR-7402-01 TCGA-BA-5559-01 TCGA-CQ-7069-01 TCGA-CN-5360-01 TCGA-CV-6936-01 TCGA-CV-7095-01 TCGA-IQ-A61E-01 TCGA-4P-AA8J-01 TCGA-CV-A6JZ-01 TCGA-CR-5247-01 TCGA-CN-4723-01 TCGA-BA-A6DG-01 TCGA-D6-A6EK-01 TCGA-CQ-6219-01 TCGA-QK-A6VB-01 TCGA-CV-6433-01 TCGA-CR-7389-01 TCGA-CN-A63T-01 TCGA-CQ-7067-01 TCGA-CR-7371-01 TCGA-F7-A50I-01 TCGA-CV-7253-01 TCGA-CV-5973-01 TCGA-CV-A463-01 TCGA-CV-7247-01 TCGA-CV-7410-01 TCGA-CN-5358-01 TCGA-CV-6943-01 TCGA-DQ-7591-01 TCGA-BB-4228-01 TCGA-CR-7385-01 TCGA-D6-8569-01 TCGA-CV-7432-01 TCGA-CQ-5330-01 TCGA-D6-6515-01 TCGA-IQ-A61I-01 TCGA-CR-5243-01 TCGA-MT-A51W-01 TCGA-CV-5439-01 TCGA-DQ-7588-01 TCGA-BB-7866-01 TCGA-HD-7832-01 TCGA-CV-7434-01 TCGA-HD-A6I0-01 TCGA-CV-7089-01 TCGA-CV-5444-01 TCGA-CN-6997-01 TCGA-CV-5979-01 TCGA-BB-A6UO-01 TCGA-CR-6472-01 TCGA-CQ-5334-01 TCGA-QK-A8Z9-01 TCGA-CV-7236-01 TCGA-H7-8501-01 TCGA-CR-7390-01 TCGA-CN-5364-01 TCGA-IQ-7632-01 TCGA-HD-7753-01 TCGA-BA-A4IH-01 TCGA-CR-7395-01 TCGA-CN-A6UY-01 TCGA-CV-5432-01 TCGA-CR-7398-01 TCGA-CR-7367-01 TCGA-P3-A6T4-01 TCGA-CV-6962-01 TCGA-CN-6022-01 TCGA-MT-A67F-01 TCGA-HD-8635-01 TCGA-CR-7399-01 TCGA-CV-7438-01 TCGA-P3-A6T8-01 TCGA-UF-A7JT-01 TCGA-CQ-6222-01 TCGA-BB-7871-01 TCGA-KU-A66S-01 TCGA-D6-A6ES-01 TCGA-CV-A45V-01 TCGA-CV-6436-01 TCGA-CV-7103-01 TCGA-UF-A71E-01 TCGA-CN-4741-01 TCGA-QK-A8Z7-01 TCGA-CV-7409-01 TCGA-QK-A6IF-01 TCGA-CV-7243-01 TCGA-CV-A45U-01 TCGA-P3-A6T7-01 TCGA-CV-6952-01 TCGA-CQ-5324-01 TCGA-UF-A719-01 TCGA-BA-4076-01 TCGA-BA-6873-01 TCGA-CV-A6K2-01 TCGA-MT-A51X-01 TCGA-BA-5152-01 TCGA-CN-4725-01 TCGA-CV-7097-01 TCGA-CV-A45P-01 TCGA-CV-7422-01 TCGA-CQ-A4CE-01 TCGA-CQ-6228-01 TCGA-QK-AA3J-01 TCGA-CR-6487-01 TCGA-T2-A6WZ-01 TCGA-CR-6493-01 TCGA-IQ-A61J-01 TCGA-IQ-A61H-01 TCGA-CN-4738-01 TCGA-D6-6824-01 TCGA-UF-A7JA-01 TCGA-CV-6954-01 TCGA-CV-A6JU-01 TCGA-DQ-5625-01 TCGA-C9-A47Z-01 TCGA-CR-7380-01 TCGA-CV-A6JN-01 TCGA-CV-A45X-01 TCGA-BA-A6DJ-01 TCGA-CV-5436-01 TCGA-CQ-7065-01 TCGA-BA-5558-01 TCGA-CN-4729-01 TCGA-CV-7424-01 TCGA-HD-7229-01 TCGA-CN-A6V6-01 TCGA-BB-8601-01 TCGA-QK-AA3K-01 TCGA-CV-7407-01 TCGA-CV-7248-01 TCGA-T3-A92M-01 TCGA-CN-A6V3-01 TCGA-QK-A6VC-01 TCGA-T2-A6X0-01 TCGA-HD-A634-01 TCGA-DQ-7594-01 TCGA-CV-7178-01 TCGA-UF-A71A-01 TCGA-CV-7414-01 TCGA-CR-7388-01 TCGA-DQ-7590-01 TCGA-CV-7252-01 TCGA-D6-A4ZB-01 TCGA-CQ-7063-01 TCGA-BA-6868-01 TCGA-CV-6942-01 TCGA-CV-5441-01 TCGA-CN-4736-01 TCGA-CQ-5331-01 TCGA-D6-A6EN-01 TCGA-CN-5373-01 TCGA-CV-A45R-01 TCGA-CR-7386-01 TCGA-BA-A4IG-01 TCGA-CN-6010-01 TCGA-UF-A718-01 TCGA-CV-7568-01 TCGA-P3-A5Q5-01 TCGA-CQ-6224-01 TCGA-BA-A6D8-01 TCGA-CV-A6JY-01 TCGA-DQ-5630-01 TCGA-CR-7377-01 TCGA-CV-7180-01 TCGA-BB-7861-01 TCGA-CR-7394-01 TCGA-CV-5431-01 TCGA-UF-A7JV-01 TCGA-CN-6992-01 TCGA-CV-A465-01 TCGA-CR-5249-01 TCGA-BB-4217-01 TCGA-CR-7373-01 TCGA-TN-A7HJ-01 TCGA-F7-A50G-01 TCGA-BB-7870-01 TCGA-CV-5977-01 TCGA-F7-7848-01 TCGA-CV-6961-01 TCGA-CR-6470-01 TCGA-CV-7435-01 TCGA-CN-6012-01 TCGA-CV-A461-01 TCGA-CV-7429-01 TCGA-QK-A6II-01 TCGA-CN-4728-01 TCGA-UF-A71D-01 TCGA-BA-5556-01 TCGA-HD-8634-01 TCGA-MT-A67D-01 TCGA-P3-A5QA-01 TCGA-CV-7430-01 TCGA-D6-6517-01 TCGA-CV-7242-01 TCGA-CN-A642-01 TCGA-CV-A6JE-01 TCGA-BB-8596-01 TCGA-CN-A63Y-01 TCGA-CQ-A4CH-01 TCGA-D6-A6EQ-01 TCGA-BA-6872-01 TCGA-CQ-5325-01 TCGA-CN-6996-01 TCGA-CV-7091-01 TCGA-BA-A4II-01 TCGA-BA-A6DE-01

data_clinical_supp_hypoxia.txt

@@ -0,0 +1,521 @@
+#Patient Identifier Buffa Hypoxia Score Winter Hypoxia Score Ragnum Hypoxia Score
+#Identifier to uniquely specify a patient. mRNA based Buffa Hypoxia Score mRNA based Winter Hypoxia Score mRNA based Ragnum Hypoxia Score
+#STRING NUMBER NUMBER NUMBER
+#PATIENT PATIENT PATIENT PATIENT
+#1 1 1 1
+PATIENT_ID BUFFA_HYPOXIA_SCORE WINTER_HYPOXIA_SCORE RAGNUM_HYPOXIA_SCORE
+TCGA-CR-5250 -15 -20 8
+TCGA-BA-5153 -11 -20 8
+TCGA-QK-A6IF -11 -18 8
+TCGA-CN-6019 -11 14 -10
+TCGA-HD-8314 -7 4 4
+TCGA-CN-5360 -7 20 10
+TCGA-CR-7393 -5 -2 -8
+TCGA-CN-5358 -5 4 8
+TCGA-D6-A6EP -5 10 -8
+TCGA-D6-6824 -5 20 0
+TCGA-QK-AA3J -5 26 6
+TCGA-HD-7754 -1 20 14
+TCGA-HD-8224 1 4 -8
+TCGA-CR-7374 1 14 14
+TCGA-IQ-7631 1 22 -20
+TCGA-BA-4078 1 24 12
+TCGA-CV-A45R 1 32 -4
+TCGA-CV-5430 3 2 10
+TCGA-CV-6939 3 8 10
+TCGA-BA-5559 3 14 10
+TCGA-CR-7382 3 14 10
+TCGA-CR-6480 5 10 18
+TCGA-CR-7376 5 12 10
+TCGA-CV-5971 5 32 0
+TCGA-P3-A5QE 7 2 8
+TCGA-DQ-7593 7 4 12
+TCGA-CR-6482 7 10 12
+TCGA-BB-4225 7 14 12
+TCGA-BB-8596 7 22 16
+TCGA-QK-A652 7 40 6
+TCGA-CR-7394 9 18 2
+TCGA-D6-6827 9 18 16
+TCGA-CN-6016 9 20 -12
+TCGA-CR-6487 9 20 20
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+TCGA-CV-A45O 9 24 -10
+TCGA-CX-7085 9 26 4
+TCGA-CR-7392 9 26 10
+TCGA-CV-7446 9 28 6
+TCGA-CN-4737 9 34 6
+TCGA-CR-7389 9 38 2
+TCGA-CN-6017 11 24 -6
+TCGA-CR-6471 11 24 12
+TCGA-CR-7385 11 34 14
+TCGA-CN-4739 11 36 16
+TCGA-DQ-7595 11 38 14
+TCGA-CN-6021 11 40 6
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+TCGA-QK-A8Z7 13 28 14
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+TCGA-IQ-A61J 13 44 -4
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+TCGA-CN-A497 17 38 18
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+TCGA-CR-6467 19 30 14
+TCGA-DQ-5625 19 34 -2
+TCGA-CN-5373 19 34 2
+TCGA-BA-A6DB 19 38 -4
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+TCGA-DQ-7594 19 42 20
+TCGA-HD-8635 19 50 10
+TCGA-QK-A8Z9 19 56 6
+TCGA-CR-6470 21 14 10
+TCGA-CR-5243 21 14 12
+TCGA-CN-A6UY 21 20 14
+TCGA-H7-7774 21 26 6
+TCGA-CR-6472 21 30 12
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+TCGA-CQ-5331 21 42 16
+TCGA-KU-A6H8 21 44 0
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+TCGA-BA-5556 21 48 12
+TCGA-CQ-7072 21 50 4
+TCGA-CR-6484 21 50 8
+TCGA-CN-5361 21 52 16
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+TCGA-CQ-5323 21 60 14
+TCGA-C9-A480 21 62 0
+TCGA-UF-A7J9 21 64 18
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+TCGA-CN-4736 23 36 8
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+TCGA-CN-6012 23 38 20
+TCGA-P3-A6SW 23 40 18
+TCGA-CR-6481 23 42 20
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+TCGA-CQ-A4C9 23 46 16
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+TCGA-CQ-6222 23 50 -2
+TCGA-MT-A67A 23 50 14
+TCGA-CQ-A4CH 23 52 20
+TCGA-F7-A50G 23 54 8
+TCGA-CN-5356 23 56 20
+TCGA-CV-5973 23 58 -8
+TCGA-P3-A6T4 23 58 2
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+TCGA-CN-5355 23 60 18
+TCGA-KU-A6H7 25 22 12
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+TCGA-HD-7831 25 38 4
+TCGA-CR-5249 25 38 20
+TCGA-CV-5444 25 40 2
+TCGA-CR-7364 25 40 12
+TCGA-CV-7090 25 44 8
+TCGA-CV-7411 25 46 -10
+TCGA-CV-A6JU 25 46 0
+TCGA-BA-7269 25 46 6
+TCGA-CN-4740 25 46 18
+TCGA-RS-A6TP 25 46 18
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+TCGA-F7-8489 25 48 16
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+TCGA-UF-A7JJ 25 50 16
+TCGA-CV-7422 25 52 16
+TCGA-CV-A464 25 52 18
+TCGA-CV-A6JE 25 54 4
+TCGA-CR-7401 25 56 10
+TCGA-CN-A63U 25 56 16
+TCGA-CV-7430 25 60 18
+TCGA-IQ-7632 25 62 14
+TCGA-CV-A460 27 20 16
+TCGA-DQ-7596 27 24 18
+TCGA-H7-A76A 27 26 18
+TCGA-CX-A4AQ 27 28 16
+TCGA-CV-6441 27 36 8
+TCGA-CR-7386 27 36 10
+TCGA-BB-A6UM 27 38 12
+TCGA-CV-7407 27 38 12
+TCGA-CV-7104 27 42 10
+TCGA-CQ-5324 27 42 14
+TCGA-CQ-5330 27 42 14
+TCGA-CN-6996 27 46 14
+TCGA-CR-7388 27 46 16
+TCGA-CV-7236 27 48 16
+TCGA-CV-7243 27 50 8
+TCGA-P3-A6T6 27 50 12
+TCGA-F7-A620 27 50 16
+TCGA-D6-6826 27 50 20
+TCGA-CV-6935 27 54 4
+TCGA-CQ-6229 27 54 12
+TCGA-CV-5435 27 54 18
+TCGA-CV-7178 27 56 14
+TCGA-CV-7414 27 56 14
+TCGA-H7-A6C4 27 58 -2
+TCGA-CQ-6227 27 58 14
+TCGA-MT-A51X 27 60 8
+TCGA-CN-6994 27 60 10
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+TCGA-DQ-7592 27 64 12
+TCGA-P3-A6T8 27 68 20
+TCGA-DQ-7590 29 26 16
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+TCGA-BA-A6D8 29 44 12
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data_cna.txt

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data_genetic_ancestry.txt

@@ -0,0 +1,6 @@
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TCGA-DQ-7589-01 TCGA-DQ-7590-01 TCGA-DQ-7591-01 TCGA-DQ-7592-01 TCGA-DQ-7593-01 TCGA-DQ-7594-01 TCGA-DQ-7595-01 TCGA-DQ-7596-01 TCGA-F7-7848-01 TCGA-F7-8298-01 TCGA-F7-8489-01 TCGA-F7-A50G-01 TCGA-F7-A61S-01 TCGA-F7-A61V-01 TCGA-F7-A61W-01 TCGA-F7-A620-01 TCGA-F7-A622-01 TCGA-F7-A623-01 TCGA-F7-A624-01 TCGA-H7-7774-01 TCGA-H7-8501-01 TCGA-H7-8502-01 TCGA-H7-A6C4-01 TCGA-H7-A6C5-01 TCGA-H7-A76A-01 TCGA-HD-7229-01 TCGA-HD-7753-01 TCGA-HD-7754-01 TCGA-HD-7832-01 TCGA-HD-7917-01 TCGA-HD-8314-01 TCGA-HD-8634-01 TCGA-HD-8635-01 TCGA-HD-A4C1-01 TCGA-HD-A633-01 TCGA-HD-A634-01 TCGA-HD-A6HZ-01 TCGA-HD-A6I0-01 TCGA-HL-7533-01 TCGA-IQ-7630-01 TCGA-IQ-7631-01 TCGA-IQ-7632-01 TCGA-IQ-A61E-01 TCGA-IQ-A61G-01 TCGA-IQ-A61H-01 TCGA-IQ-A61I-01 TCGA-IQ-A61J-01 TCGA-IQ-A61K-01 TCGA-IQ-A61L-01 TCGA-IQ-A61O-01 TCGA-IQ-A6SG-01 TCGA-IQ-A6SH-01 TCGA-KU-A66S-01 TCGA-KU-A66T-01 TCGA-KU-A6H7-01 TCGA-KU-A6H8-01 TCGA-MT-A51W-01 TCGA-MT-A51X-01 TCGA-MT-A67D-01 TCGA-MT-A67F-01 TCGA-MT-A67G-01 TCGA-MT-A7BN-01 TCGA-MZ-A6I9-01 TCGA-MZ-A7D7-01 TCGA-P3-A5Q6-01 TCGA-P3-A5QA-01 TCGA-P3-A5QE-01 TCGA-P3-A5QF-01 TCGA-P3-A6SW-01 TCGA-P3-A6SX-01 TCGA-P3-A6T0-01 TCGA-P3-A6T2-01 TCGA-P3-A6T3-01 TCGA-P3-A6T4-01 TCGA-P3-A6T5-01 TCGA-P3-A6T6-01 TCGA-P3-A6T7-01 TCGA-P3-A6T8-01 TCGA-QK-A652-01 TCGA-QK-A6IF-01 TCGA-QK-A6IG-01 TCGA-QK-A6IH-01 TCGA-QK-A6II-01 TCGA-QK-A6V9-01 TCGA-QK-A6VB-01 TCGA-QK-A6VC-01 TCGA-QK-A8Z7-01 TCGA-QK-A8Z8-01 TCGA-QK-A8Z9-01 TCGA-QK-A8ZA-01 TCGA-QK-A8ZB-01 TCGA-QK-AA3J-01 TCGA-QK-AA3K-01 TCGA-RS-A6TO-01 TCGA-RS-A6TP-01 TCGA-T2-A6WX-01 TCGA-T2-A6WZ-01 TCGA-T2-A6X0-01 TCGA-T2-A6X2-01 TCGA-T3-A92N-01 TCGA-TN-A7HI-01 TCGA-TN-A7HJ-01 TCGA-TN-A7HL-01 TCGA-UF-A718-01 TCGA-UF-A71A-01 TCGA-UF-A71B-01 TCGA-UF-A71D-01 TCGA-UF-A7J9-01 TCGA-UF-A7JA-01 TCGA-UF-A7JC-01 TCGA-UF-A7JD-01 TCGA-UF-A7JF-01 TCGA-UF-A7JJ-01 TCGA-UF-A7JK-01 TCGA-UF-A7JO-01 TCGA-UF-A7JS-01 TCGA-UF-A7JT-01 TCGA-UF-A7JV-01 TCGA-WA-A7GZ-01 TCGA-WA-A7H4-01 TCGA-MZ-A5BI-01
+EUR Admixture % EUR 0.19096 0.950315 0.981492 0.99996 0.99807 0.973053 0.934714 0.180401 0.994847 0.531529 0.994701 0.912053 0.094015 0.993001 0.153059 0.982094 0.202381 0.98225 0.97883 0.999953 0.988786 0.980807 0.169952 0.98322 0.076604 0.994743 0.985803 0.987009 0.341965 0.146539 0.995782 0.017596 0.291657 0.994421 0.979438 0.813139 0.879741 0.912476 0.997754 0.927135 0.990432 0.99996 0.99996 0.249103 0.98745 0.188626 0.988733 0.981815 0.989842 0.97439 0.983059 0.025802 0.016884 0.959547 0.986397 0.961522 0.970123 0.994444 0.913391 0.986636 0.986869 0.86657 0.976157 0.976033 0.990205 0.993685 0.994764 0.99996 0.985206 0.991074 0.983407 0.99996 0.112056 0.977481 0.988376 0.990215 0.888381 0.331793 0.673488 0.956572 0.90188 0.99996 0.990861 0.925061 0.989097 0.96775 0.987129 0.997936 0.99996 0.988072 0.95708 0.981786 0.180683 0.992164 0.953052 0.98668 0.99996 0.972821 0.876629 0.971076 0.990467 0.992509 0.991252 0.955826 0.98823 0.994254 0.979978 0.920232 0.984923 0.99996 0.973227 0.988516 0.958479 0.995275 0.992811 0.987645 0.972616 0.984537 0.985848 0.969966 0.965862 0.976205 0.952191 0.981499 0.939552 0.999491 0.979915 0.076244 0.861593 0.988885 0.999768 0.986165 0.907226 0.118425 0.961248 0.999295 0.989892 0.995923 0.935063 0.99996 0.988725 0.985126 0.981999 0.9489 0.926765 0.951083 0.075004 0.961295 0.930047 0.998259 0.99606 0.984567 0.161843 0.971729 0.97508 0.956978 0.996096 0.991224 0.996663 0.018364 0.994864 0.992849 0.171226 0.933948 0.941822 0.993323 0.996318 0.82411 0.992975 0.999021 0.99854 0.986777 0.99996 0.997033 0.312557 0.203481 0.989577 0.903536 0.324419 0.993106 0.276682 0.995546 0.996328 0.904645 0.986062 0.99996 0.99995 0.928154 0.992076 0.99996 0.989394 0.980838 0.997648 0.950155 0.99996 0.992046 0.988147 0.920092 0.992545 0.16833 0.99996 0.991172 0.999954 0.981762 0.996334 0.979479 0.95712 0.996619 0.988337 0.96423 0.974818 0.996621 0.99092 0.359846 0.990643 0.68518 0.99996 0.990613 0.860059 0.897602 0.081476 0.225574 0.978709 0.3234 0.99996 0.982987 0.990941 0.990518 0.069739 0.799406 0.974429 0.991859 0.973164 0.278726 0.984669 0.9142 0.99996 0.994485 0.986695 0.959769 0.99996 0.990639 0.99996 0.56536 0.982541 0.99996 0.981033 0.989868 0.96784 0.994889 0.984924 0.203555 0.994288 0.621387 0.992932 0.340593 0.995657 0.392698 0.992061 0.911514 0.935588 0.655389 0.947477 0.988632 0.99996 0.993108 0.998311 0.994508 0.984939 0.921407 0.99448 0.989629 0.985672 0.987126 0.984656 0.991539 0.987121 0.975391 0.999736 0.990511 0.095818 0.999951 0.047693 0.13854 0.930825 0.922951 0.997498 0.170061 0.994276 0.996739 0.157542 0.990113 0.985819 0.989043 0.993004 0.874681 0.995384 0.985851 0.990567 0.995467 0.009365 0.996434 0.998348 0.993771 0.942832 0.99996 0.912564 0.912796 0.99996 0.985632 0.965168 0.996513 0.982247 0.992695 0.963052 0.965848 0.783863 0.990104 0.98557 0.939149 0.997784 0.775123 0.622879 0.995597 0.952233 0.99996 0.989456 0.983335 0.569549 0.99996 0.997524 0.962561 0.987567 0.991324 0.979481 0.952085 0.991622 0.99996 0.998358 0.913775 0.949365 0.976842 0.149439 0.086607 0.929389 0.983221 0.979157 0.987546 0.981208 0.975984 0.982934 0.981061 0.907863 0.99089 0.921815 0.980455 0.969123 0.987739 0.996529 0.989827 0.981736 0.976964 0.988192 0.974676 0.951077 0.98637 0.887046 0.9514 0.950139 0.95936 0.987287 0.941447 0.99302 0.956713 0.932055 0.986216 0.993541 0.991134 0.995088 0.974357 0.950615 0.828643 0.931611 0.970233 0.946565 0.01927 0.968109 0.945652 0.950722 0.956377 0.996678 0.994384 0.979089 0.977603 0.968391 0.990481 0.989065 0.153011 0.998917 0.998544 0.985792 0.986411 0.993572 0.994488 0.088499 0.99249 0.972192 0.995487 0.990953 0.999957 0.922715 0.993528 0.204602 0.986169 0.891041 0.807505 0.054711 0.959596 0.903492 0.538684 0.398371 0.710166 0.222557 0.956303 0.926576 0.994308 0.979837 0.967523 0.916583 0.915203 0.951577 0.967349 0.993498 0.998888 0.992847 0.932723 0.640481 0.962195 0.983727 0.977747 0.956126 0.907577 0.97258 0.92309 0.92924 0.992414 0.954488 0.887044 0.986005 0.945373 0.998769 0.99996 0.874184 0.995624 0.990933 0.990794 0.280229 0.076733 0.24574 0.085489 0.19499 0.127081 0.055538 0.129084 0.990146 0.951963 0.934587 0.980342 0.992058 0.917914 0.145762 0.99467 0.978887 0.963999 0.719378 0.942521 0.708525 0.700885 0.857847 0.993147 0.828639 0.457409 0.799125 0.481149 0.863332 0.982486 0.744396 0.86771 0.955294 0.997479 0.951925 0.757375
+AFR Admixture % AFR 0.795067 0.032778 0.012064 1.00E-05 1.00E-05 0.024595 0.044513 0.795278 0.005123 0.384484 0.000765 0.01922 0.890126 1.00E-05 0.814966 0.013207 0.024097 0.006273 0.009805 1.00E-05 0.008068 0.019162 0.823374 0.007582 0.914575 0.004329 0.00953 0.006997 0.650549 0.00503 0.002634 0.938573 0.69009 1.00E-05 0.001617 0.132981 0.092536 0.063496 0.002183 0.017366 0.003543 1.00E-05 1.00E-05 1.00E-05 0.004225 0.787896 0.00768 0.01664 0.00722 0.013418 1.00E-05 0.008781 1.00E-05 0.023835 0.004283 0.021788 0.014637 0.005125 0.059778 0.004211 0.003903 0.09223 0.013866 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006456 1.00E-05 0.011633 1.00E-05 0.842758 0.01171 0.001618 0.005078 0.065179 0.655751 0.143839 0.011785 0.070304 1.00E-05 1.00E-05 0.049482 1.00E-05 0.018573 0.009371 1.00E-05 1.00E-05 1.00E-05 0.00524 1.00E-05 0.798239 1.00E-05 0.015091 1.00E-05 1.00E-05 0.021037 0.090909 0.018425 1.00E-05 1.00E-05 0.003427 0.033379 1.00E-05 0.005716 0.005205 0.063604 0.006813 1.00E-05 0.013591 1.00E-05 0.022199 1.00E-05 1.00E-05 0.007188 0.019742 0.010002 0.00519 0.01526 0.008545 1.00E-05 0.02008 0.001557 0.01311 1.00E-05 1.00E-05 1.00E-05 0.106262 0.002092 0.000202 0.000994 0.020137 0.864611 0.006655 1.00E-05 0.006088 0.004046 0.01264 1.00E-05 0.00936 0.010402 1.00E-05 0.035383 0.009441 0.03953 0.006584 0.017352 0.01378 1.00E-05 0.00042 0.005938 1.00E-05 1.00E-05 0.018442 0.038 1.00E-05 0.007257 0.002605 0.026499 0.004493 0.005484 0.817203 0.048019 0.04112 1.00E-05 1.00E-05 0.134898 0.004982 0.000949 1.00E-05 0.003217 1.00E-05 0.001994 0.679679 0.010283 1.00E-05 0.011899 0.66012 0.00209 0.708039 1.00E-05 1.00E-05 0.067867 0.010917 1.00E-05 1.00E-05 0.050779 1.00E-05 1.00E-05 0.008911 0.0064 1.00E-05 0.022404 1.00E-05 0.002775 0.006849 0.030269 0.007424 0.818909 1.00E-05 0.00659 1.00E-05 0.009651 0.00363 0.010873 0.030609 1.00E-05 0.004795 0.016073 0.014747 1.00E-05 0.002158 0.631839 0.007593 0.026896 1.00E-05 0.005108 0.103861 0.073464 0.897355 0.763189 0.00798 0.046067 1.00E-05 0.011794 0.007811 1.00E-05 0.902429 0.034629 1.00E-05 0.003514 1.00E-05 0.042234 0.006361 0.052663 1.00E-05 0.002515 0.007409 0.02823 1.00E-05 0.003701 1.00E-05 0.06517 0.008926 1.00E-05 0.014068 0.00779 0.003478 0.000904 0.007025 0.779397 0.003851 0.064721 0.004894 0.59628 0.001862 0.082157 1.00E-05 0.04322 0.047036 0.051898 0.03591 0.007562 1.00E-05 0.003532 1.00E-05 1.00E-05 1.00E-05 0.060409 0.004933 0.004139 0.000348 0.011041 0.009873 0.003754 0.00802 0.009971 1.00E-05 0.004987 0.882953 1.00E-05 0.947561 0.853747 0.009987 0.032203 1.00E-05 0.735322 0.003963 0.000753 0.81696 0.006011 0.003341 1.00E-05 1.00E-05 0.069372 0.002241 0.00493 1.00E-05 1.00E-05 1.00E-05 0.00181 1.00E-05 1.00E-05 0.042893 1.00E-05 0.03182 0.062393 1.00E-05 1.00E-05 0.017284 0.003457 0.010098 1.00E-05 0.028315 0.025404 0.035624 0.009866 0.014397 0.047072 1.00E-05 0.063892 0.055596 0.002839 0.009784 1.00E-05 0.008477 0.00251 0.050085 1.00E-05 1.00E-05 0.03169 0.003355 1.00E-05 0.017982 0.032828 1.00E-05 1.00E-05 1.00E-05 0.064109 0.042579 0.020241 0.832076 0.89609 0.055081 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003772 1.00E-05 0.06258 1.00E-05 0.035001 0.007105 0.017544 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006942 1.00E-05 0.012066 0.030461 0.00966 0.08552 0.036583 1.00E-05 0.010903 1.00E-05 0.044857 0.004489 0.012003 0.054146 0.013754 0.00198 0.00656 1.00E-05 1.00E-05 1.00E-05 0.030087 1.00E-05 1.00E-05 0.039583 0.002785 0.011497 0.026906 0.010987 0.014576 1.00E-05 1.00E-05 0.006059 0.016892 0.022805 0.004295 0.000195 0.829926 1.00E-05 1.00E-05 0.007414 0.008607 1.00E-05 0.002599 0.896821 0.00748 0.017074 1.00E-05 0.007794 1.00E-05 0.046647 1.00E-05 0.786558 0.0035 0.052674 0.137462 0.934928 0.012937 0.029703 0.392657 0.137042 0.097313 0.77405 0.020452 0.054081 1.00E-05 1.00E-05 0.012082 0.061152 0.06767 0.015567 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.045213 0.027943 0.028597 0.012215 0.012574 0.034109 0.073194 0.023715 0.049981 0.053182 0.007347 0.039944 0.090303 0.008981 0.015942 1.00E-05 1.00E-05 0.009792 1.00E-05 0.009037 0.002834 0.701645 0.901946 0.746214 0.902421 0.795538 0.864122 0.930991 0.865445 0.004683 0.014938 0.056544 0.008832 0.007912 0.024021 0.84858 1.00E-05 0.016329 0.023266 0.189221 0.040225 0.222879 0.236886 0.050568 0.0033 0.078361 0.361188 0.106551 0.2948 0.048124 0.003572 0.205442 0.053635 0.035962 1.00E-05 0.028579 0.103756
+EAS Admixture % EAS 0.009933 0.013479 0.002237 1.00E-05 1.70E-05 0.002331 0.016245 0.015958 1.00E-05 0.005539 1.10E-05 0.000359 0.004302 0.00383 0.017557 0.004634 0.681813 0.001088 0.005451 1.00E-05 1.00E-05 1.00E-05 0.004556 0.005958 0.007334 1.00E-05 0.001805 0.005974 0.007465 0.011133 0.001564 0.009893 0.01124 1.00E-05 1.00E-05 0.043632 0.027703 0.02176 4.40E-05 0.013221 0.003592 1.00E-05 1.00E-05 0.019621 0.008305 0.018306 0.002787 1.00E-05 1.50E-05 0.004223 0.009638 0.957282 0.971432 0.014804 1.00E-05 0.016187 0.013891 0.000411 0.021123 0.002066 1.00E-05 0.037288 0.006437 0.018497 0.002191 1.00E-05 0.000402 1.00E-05 0.005037 0.001257 1.00E-05 1.00E-05 0.035427 0.002528 1.00E-05 1.00E-05 0.023626 0.001341 1.00E-05 0.003735 0.019362 1.00E-05 0.005762 0.024097 1.00E-05 0.013656 0.00331 1.00E-05 1.00E-05 0.006892 0.005021 0.015998 0.011678 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000905 0.026205 0.010412 1.00E-05 0.006691 0.005029 0.010775 1.00E-05 1.00E-05 0.007364 0.012976 0.001315 1.00E-05 0.007774 0.009809 0.019302 0.002015 0.003836 0.002 0.005662 0.002646 0.005238 0.003782 0.006194 0.008564 0.010085 0.003073 1.00E-05 1.00E-05 0.006942 0.069208 0.027581 0.006455 1.00E-05 0.004812 0.00944 0.014245 0.021806 1.00E-05 0.000736 1.00E-05 1.00E-05 1.00E-05 0.001895 0.001968 1.00E-05 0.011305 2.00E-05 0.009367 0.036058 1.00E-05 1.00E-05 1.00E-05 2.00E-05 0.009475 0.021685 0.009186 0.004985 0.005002 1.00E-05 1.00E-05 1.00E-05 0.955117 1.00E-05 0.001647 0.011551 0.015787 0.015154 1.60E-05 1.00E-05 0.038075 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002606 0.026133 1.00E-05 1.00E-05 0.011143 1.00E-05 0.007789 0.004416 1.00E-05 0.021904 0.002637 1.00E-05 1.00E-05 0.021047 0.007894 1.00E-05 0.001449 0.005332 1.00E-05 0.008878 1.00E-05 0.001297 0.004984 0.016292 1.00E-05 0.00973 1.00E-05 1.00E-05 1.00E-05 0.008567 1.60E-05 0.009628 0.007434 0.000986 0.006848 0.007891 0.010416 0.003349 1.20E-05 1.00E-05 0.00064 0.014967 1.00E-05 0.002701 0.031115 0.028914 0.007679 0.002695 0.004047 0.018679 1.00E-05 0.001 1.00E-05 1.00E-05 0.021397 0.009727 0.017734 1.00E-05 0.004549 0.026018 0.008604 0.017473 1.00E-05 0.000205 1.00E-05 0.011982 1.00E-05 1.00E-05 1.00E-05 0.017481 0.008512 1.00E-05 0.00488 0.000891 0.002884 1.00E-05 1.00E-05 0.012008 0.001841 0.013743 1.00E-05 0.013367 1.00E-05 0.02707 0.007909 0.009378 0.017357 0.013622 0.01659 0.003786 1.00E-05 0.00334 0.001659 1.00E-05 0.001161 0.011218 0.000567 0.006212 1.00E-05 0.001813 0.003687 0.003504 0.004431 0.012489 0.000234 0.003093 0.015839 1.00E-05 0.004727 0.005248 0.01553 0.010914 0.002472 0.00935 1.00E-05 0.002488 0.019479 1.00E-05 1.00E-05 1.00E-05 0.002877 0.019368 1.00E-05 8.70E-05 0.004 1.00E-05 0.97648 0.001736 1.00E-05 0.002533 0.002077 1.00E-05 1.00E-05 0.020622 1.00E-05 1.00E-05 0.013973 1.00E-05 0.007635 0.005131 0.008613 0.003119 0.01552 1.00E-05 1.00E-05 0.013759 1.00E-05 0.005653 0.017871 0.001543 0.00783 1.00E-05 0.002038 0.002697 0.011637 1.00E-05 9.20E-05 0.003698 0.00453 0.004908 0.000404 0.012099 0.002419 1.00E-05 1.00E-05 0.01041 0.008036 1.00E-05 0.012441 0.015628 0.013674 0.008512 0.007472 0.010161 0.016211 0.021806 0.009063 0.003298 0.023453 0.004996 0.031187 0.008995 0.011784 0.007316 0.002921 0.006252 0.008707 0.010671 0.002888 0.01138 0.017065 0.003323 0.025505 0.011997 0.010273 0.00333 0.000336 0.011789 0.002471 0.014312 0.013779 1.00E-05 1.00E-05 0.002009 1.00E-05 0.014815 0.036852 0.110931 0.056176 0.027221 0.013832 0.975142 0.018586 0.021978 0.034503 0.018815 1.00E-05 0.005586 0.008585 0.005147 0.005806 0.003711 0.000167 0.01325 1.00E-05 1.00E-05 1.00E-05 0.004962 0.002427 1.00E-05 0.002237 1.00E-05 0.010708 1.00E-05 1.00E-05 1.30E-05 0.003626 1.00E-05 1.00E-05 0.003798 0.006291 0.008102 0.009347 0.002684 0.014699 0.043049 0.012213 0.014153 0.003373 0.012118 0.017949 1.00E-05 0.004305 0.020375 0.017967 0.013345 0.027274 0.019008 0.004356 1.00E-05 0.007123 0.021382 0.224017 0.005627 0.002366 0.006606 0.008395 0.014955 1.00E-05 0.023276 0.015875 1.00E-05 0.005548 0.018977 0.001643 0.018925 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.016729 0.008489 0.007048 0.002398 0.006497 0.007386 0.006965 0.005451 0.003533 0.006573 0.007444 0.00787 1.00E-05 0.028579 0.001295 0.003219 0.004764 0.010557 0.003876 0.012664 0.01052 0.009365 0.022796 0.003533 0.018392 0.013306 0.012075 0.00194 0.00485 1.00E-05 0.014632 0.008463 0.008724 0.002491 0.014166 0.006395
+AMR Admixture % AMR 0.00403 0.003417 0.001663 1.00E-05 1.00E-05 1.00E-05 0.004519 0.008353 1.00E-05 0.078184 1.00E-05 1.00E-05 0.007756 1.00E-05 0.014408 5.50E-05 0.009534 0.010379 0.005904 1.70E-05 0.003125 1.10E-05 0.002108 0.000578 0.001476 0.000907 0.002852 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.033928 1.00E-05 8.40E-05 1.00E-05 0.010238 1.00E-05 0.002258 1.00E-05 0.030662 0.001158 1.00E-05 1.00E-05 0.001747 1.00E-05 0.005162 0.00079 0.001525 0.002913 0.007959 0.003118 1.00E-05 1.00E-05 0.001804 1.00E-05 0.000493 0.001339 1.00E-05 0.005698 1.00E-05 1.00E-05 0.003902 1.00E-05 0.000158 1.00E-05 0.001146 1.00E-05 1.00E-05 1.00E-05 0.005172 0.000876 1.00E-05 0.00975 0.000599 1.00E-05 0.001857 1.00E-05 0.011105 0.180468 1.00E-05 0.008445 1.00E-05 0.001264 1.00E-05 0.002433 1.00E-05 0.00018 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001305 0.00939 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003256 0.006247 7.70E-05 1.00E-05 1.00E-05 1.30E-05 1.00E-05 1.00E-05 1.00E-05 0.005915 0.003178 0.005529 1.00E-05 0.005398 0.001655 1.00E-05 1.00E-05 0.003333 0.003157 0.001969 0.002806 0.001461 0.010983 1.00E-05 0.000671 1.00E-05 1.00E-05 1.00E-05 0.000479 0.00309 1.00E-05 0.004553 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002708 0.005506 1.00E-05 0.003273 1.10E-05 1.00E-05 1.00E-05 1.00E-05 0.002494 0.000587 0.004402 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.001708 0.00349 1.00E-05 1.00E-05 0.019065 0.001483 1.00E-05 0.000396 0.001499 1.00E-05 1.00E-05 0.000623 1.00E-05 1.00E-05 0.002236 0.001894 1.00E-05 0.003652 0.002908 4.90E-05 1.00E-05 0.00143 1.00E-05 1.00E-05 0.000953 0.00284 0.000634 0.000867 1.00E-05 0.004308 1.00E-05 0.00149 1.00E-05 0.003638 0.005574 0.000373 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000236 1.00E-05 0.002322 0.018552 1.00E-05 0.003871 1.00E-05 0.000123 1.10E-05 0.003022 1.00E-05 1.00E-05 1.60E-05 1.00E-05 1.00E-05 1.00E-05 0.004826 1.00E-05 1.00E-05 0.011796 1.00E-05 1.00E-05 1.00E-05 0.008294 0.001113 0.254715 1.00E-05 0.001568 0.004954 1.00E-05 0.01348 0.008532 0.002667 0.611844 1.00E-05 0.004208 0.001228 1.00E-05 0.006425 0.156228 0.001633 1.00E-05 0.011286 0.653012 0.000356 0.014583 1.00E-05 5.50E-05 0.004644 1.00E-05 1.00E-05 0.00564 1.00E-05 0.351979 1.00E-05 1.00E-05 1.00E-05 0.001441 0.025788 1.00E-05 0.004187 0.00418 1.00E-05 0.283252 1.00E-05 0.04975 1.00E-05 0.496667 1.00E-05 1.00E-05 1.00E-05 0.26843 1.30E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003933 0.006956 1.00E-05 1.00E-05 0.006592 1.00E-05 0.001774 0.001194 0.000418 0.00214 1.00E-05 0.001399 0.00538 1.90E-05 1.00E-05 0.002454 0.043648 1.00E-05 1.00E-05 0.085256 1.00E-05 1.00E-05 0.00601 1.00E-05 1.40E-05 1.00E-05 1.00E-05 0.036569 0.00223 0.009121 0.005414 1.00E-05 1.00E-05 1.00E-05 0.001622 0.003676 0.001938 1.00E-05 1.00E-05 0.004179 1.00E-05 1.00E-05 0.003565 1.00E-05 1.00E-05 0.000737 1.00E-05 0.005096 0.164983 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.298519 1.00E-05 0.030143 1.00E-05 1.90E-05 0.011448 0.364123 1.00E-05 0.000789 0.002042 0.002311 0.003748 0.002123 0.002977 1.00E-05 1.00E-05 0.001612 0.002441 1.00E-05 0.002897 0.006034 0.001665 0.001847 0.003754 0.003445 0.002273 0.002561 0.00219 0.004221 0.002371 0.006094 0.001963 0.011987 0.003434 0.001539 0.003722 0.00053 0.003901 0.005365 0.003852 1.00E-05 0.001868 0.000189 0.000637 0.001919 1.00E-05 0.000296 1.00E-05 0.003197 0.001897 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000287 1.00E-05 0.005535 0.011425 0.027738 0.012193 0.001961 1.00E-05 1.00E-05 0.001798 0.005453 0.003777 0.005978 0.003292 1.00E-05 0.006257 0.000347 1.00E-05 0.001503 1.00E-05 0.003803 0.001053 1.00E-05 0.004578 1.00E-05 1.00E-05 0.002893 0.012434 1.00E-05 1.50E-05 0.002257 0.001233 1.00E-05 0.027002 0.002854 0.00882 0.003935 0.041426 0.046921 0.001005 0.006387 1.00E-05 0.025601 0.452364 0.178358 1.00E-05 0.011117 0.001384 0.0004 0.015838 1.00E-05 0.004288 0.003772 0.005572 0.001005 0.002126 0.001082 1.00E-05 0.000671 0.107549 0.003571 0.001682 0.003063 0.00136 0.004265 0.003685 1.70E-05 0.001692 0.000219 1.00E-05 0.003666 0.003361 0.000856 0.001201 1.00E-05 1.00E-05 0.004346 1.00E-05 0.004708 0.001387 0.012816 1.00E-05 0.009681 0.002965 0.0014 0.006496 1.00E-05 0.001629 1.00E-05 0.001416 0.002947 1.00E-05 1.00E-05 0.004191 0.002091 1.00E-05 0.002168 0.087515 0.004579 0.058066 0.052855 0.068778 1.00E-05 0.074598 0.168087 0.082239 0.2221 0.083684 1.00E-05 0.03552 0.068488 1.00E-05 1.00E-05 0.005319 0.132465
+SAS Admixture % SAS 1.00E-05 1.00E-05 0.002544 1.00E-05 0.001893 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.000265 0.004512 0.068358 0.003802 0.00315 1.00E-05 1.00E-05 0.082175 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002662 1.00E-05 1.10E-05 1.00E-05 1.00E-05 1.00E-05 0.837288 1.00E-05 1.00E-05 0.007004 0.005476 0.018925 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.011615 0.001275 1.00E-05 1.00E-05 0.72952 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004174 0.008125 0.011663 1.00E-05 0.0093 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.007077 0.009208 1.00E-05 0.00353 0.005302 0.007583 0.005149 0.004815 1.00E-05 0.003291 0.002487 0.004074 1.00E-05 1.00E-05 0.007683 0.009987 0.00284 0.022805 1.00E-05 0.002195 0.027898 1.00E-05 1.00E-05 0.002102 0.00135 0.008451 1.00E-05 1.00E-05 0.002034 1.00E-05 0.005016 0.032649 0.0009 1.00E-05 0.007806 0.031836 0.01329 1.00E-05 0.001981 1.00E-05 1.00E-05 0.009503 0.00078 0.000279 1.00E-05 0.01174 1.00E-05 0.001538 1.00E-05 0.001419 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00269 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002263 1.00E-05 0.019389 0.014551 0.017634 0.013861 0.047318 1.00E-05 0.010042 0.854528 1.00E-05 0.002558 1.00E-05 0.008019 0.063187 1.00E-05 0.004785 0.000675 1.00E-05 1.00E-05 0.052277 1.00E-05 1.00E-05 1.00E-05 0.017394 1.00E-05 0.063764 1.00E-05 0.882345 0.021333 0.056153 1.30E-05 1.00E-05 1.00E-05 0.816453 1.00E-05 1.00E-05 1.00E-05 0.003488 1.00E-05 0.000712 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006641 1.00E-05 1.00E-05 0.001983 1.00E-05 1.00E-05 0.009986 1.00E-05 1.00E-05 0.002318 0.759469 0.009536 0.084545 1.00E-05 0.004783 0.006001 1.90E-05 1.40E-05 1.00E-05 1.00E-05 1.00E-05 2.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.00742 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.033224 1.00E-05 1.00E-05 1.00E-05 0.002218 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002376 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.0069 1.00E-05 1.00E-05 0.018243 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.006597 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.009452 1.00E-05 1.00E-05 0.006194 0.004607 0.010991 1.00E-05 1.00E-05 0.001081 1.00E-05 0.00274 0.001243 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004187 0.003854 0.00086 1.00E-05 0.016897 0.002154 1.00E-05 0.002461 0.001409 1.10E-05 0.035878 1.00E-05 0.010661 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005462 0.009957 1.00E-05 1.00E-05 1.00E-05 0.007378 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.033922 1.00E-05 1.00E-05 0.001741 1.00E-05 1.00E-05 0.003856 0.010817 0.010927 0.004099 1.00E-05 0.000135 1.00E-05 1.00E-05 0.004503 0.014135 1.00E-05 1.00E-05 1.00E-05 0.010261 1.00E-05 0.055596 1.00E-05 1.00E-05 0.014338 1.00E-05 1.00E-05 1.00E-05 0.001428 1.00E-05 0.000533 1.00E-05 1.00E-05 1.30E-05 1.00E-05 0.002186 0.155323 0.005136 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004605 1.00E-05 0.001586 1.00E-05 0.002237 1.00E-05 1.00E-05 1.00E-05 0.005939 1.00E-05 1.00E-05 0.009265 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.004503 0.009916 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.013261 1.00E-05 0.002141 1.00E-05 1.00E-05 1.00E-05 0.001212 1.00E-05 1.00E-05 0.004182 0.001571 0.0089 1.00E-05 0.001208 1.00E-05 1.00E-05 1.00E-05 0.039282 0.026397 0.00917 1.00E-05 1.00E-05 0.016962 1.00E-05 1.00E-05 0.004458 1.00E-05 0.004882 0.005282 0.001098 0.0026 1.00E-05 0.000575 1.00E-05 0.002793 1.00E-05 1.00E-05 1.00E-05 0.004255 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002988 1.00E-05 0.010563 1.00E-05 1.00E-05 0.001426 0.002206 1.00E-05 0.003981 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.002236 1.00E-05 1.00E-05 1.00E-05 0.003598 1.00E-05 0.002598 0.008568 1.00E-05 1.00E-05 0.018396 0.052097 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.005272 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.012628 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.003636 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.018904 1.00E-05 1.00E-05 0.116004 1.00E-05 1.00E-05 0.001654 1.00E-05 1.50E-05 0.000988 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.026516 1.00E-05 1.00E-05 1.00E-05 0.029475 0.000172 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 1.00E-05 0.013921 1.00E-05 0.001705 1.00E-05 1.00E-05 1.00E-05 1.00E-05

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+size 133307194

data_sv.txt

@@ -0,0 +1,842 @@
+Sample_Id Site1_Hugo_Symbol Site1_Chromosome Site1_Position Site2_Hugo_Symbol Site2_Chromosome Site2_Position Site2_Effect_On_Frame Tumor_Split_Read_Count Tumor_Paired_End_Read_Count SV_Status NCBI_Build Event_Info
+TCGA-4P-AA8J-01 SUFU 10 102550106 ADK 10 74708321 in-frame 19 38 SOMATIC GRCh37 SUFU-ADK
+TCGA-4P-AA8J-01 SMPD4P1 22 20626096 MED15 22 20582611 9 54 SOMATIC GRCh37 SMPD4P1-MED15
+TCGA-4P-AA8J-01 MMS19 10 97498273 MICU1 10 72566794 2 8 SOMATIC GRCh37 MMS19-MICU1
+TCGA-BA-4076-01 PHACTR2 6 143678209 PLAGL1 6 143968978 3 30 SOMATIC GRCh37 PHACTR2-PLAGL1
+TCGA-BA-4078-01 SLC2A12 6 134052378 SGK1 6 134262148 frameshift 20 61 SOMATIC GRCh37 SLC2A12-SGK1
+TCGA-BA-4078-01 PTK7 6 43076567 ANKS1A 6 34967239 frameshift 5 38 SOMATIC GRCh37 PTK7-ANKS1A
+TCGA-BA-4078-01 ATF6B 6 32116480 CMAHP 6 25115100 3 33 SOMATIC GRCh37 ATF6B-CMAHP
+TCGA-BA-4078-01 ANKS1A 6 34889599 DCDC2 6 24353623 in-frame 5 2 SOMATIC GRCh37 ANKS1A-DCDC2
+TCGA-BA-4078-01 POFUT1 20 32208065 FDFT1 8 11831518 frameshift 1 1 SOMATIC GRCh37 POFUT1-FDFT1
+TCGA-BA-4078-01 PRKDC 8 47927194 SPIDR 8 47595811 frameshift 1 1 SOMATIC GRCh37 PRKDC-SPIDR
+TCGA-BA-5151-01 STIM2 4 26861369 TBC1D19 4 26720081 in-frame 1 3 SOMATIC GRCh37 STIM2-TBC1D19
+TCGA-BA-5152-01 RBMS2 12 56586926 NACA 12 56713190 in-frame 2 1 SOMATIC GRCh37 RBMS2-NACA
+TCGA-BA-5153-01 TRIO 5 14280436 PPP2R5E 14 63382157 in-frame 12 78 SOMATIC GRCh37 TRIO-PPP2R5E
+TCGA-BA-5153-01 ARIH2 3 48918998 TRIO 5 14286871 1 9 SOMATIC GRCh37 ARIH2-TRIO
+TCGA-BA-5557-01 TFRC 3 196082043 JUP 17 41771862 1 1 SOMATIC GRCh37 TFRC-JUP
+TCGA-BA-5558-01 GRAMD2 15 72197731 PKM 15 72202620 frameshift 10 29 SOMATIC GRCh37 GRAMD2-PKM
+TCGA-BA-5559-01 SAMD12 8 118580715 SAMHD1 20 36916830 in-frame 21 76 SOMATIC GRCh37 SAMD12-SAMHD1
+TCGA-BA-5559-01 SAMHD1 20 36919364 YIF1B 19 38305507 in-frame 12 57 SOMATIC GRCh37 SAMHD1-YIF1B
+TCGA-BA-5559-01 YIF1B 19 38309405 SAMD12 8 118439961 in-frame 2 6 SOMATIC GRCh37 YIF1B-SAMD12
+TCGA-BA-6868-01 LAMB1 7 107986022 PUS7 7 105457926 in-frame 86 384 SOMATIC GRCh37 LAMB1-PUS7
+TCGA-BA-6868-01 MAMDC2 9 70131612 MRPS28 8 79919148 frameshift 58 165 SOMATIC GRCh37 MAMDC2-MRPS28
+TCGA-BA-6868-01 ELAVL1 19 7991644 LYPLA2P2 19 7879940 12 28 SOMATIC GRCh37 ELAVL1-LYPLA2P2
+TCGA-BA-6868-01 SGMS1 10 50466890 GRID1 10 85916239 3 23 SOMATIC GRCh37 SGMS1-GRID1
+TCGA-BA-6868-01 MRPS28 8 80002999 MAMDC2 9 70108211 in-frame 3 4 SOMATIC GRCh37 MRPS28-MAMDC2
+TCGA-BA-6868-01 ELAVL1 19 7973807 PRR36 19 7873617 in-frame 1000 1000 SOMATIC GRCh37 ELAVL1-PRR36
+TCGA-BA-6869-01 PEMT 17 17576920 RAI1 17 17724028 4 31 SOMATIC GRCh37 PEMT-RAI1
+TCGA-BA-6869-01 RAI1 17 17724159 PEMT 17 17577027 5 26 SOMATIC GRCh37 RAI1-PEMT
+TCGA-BA-6869-01 PDLIM1 10 95263864 TNRC6A 16 24789232 frameshift 1 7 SOMATIC GRCh37 PDLIM1-TNRC6A
+TCGA-BA-6869-01 PGD 1 10399704 CLSTN1 1 9730705 in-frame 1 1 SOMATIC GRCh37 PGD-CLSTN1
+TCGA-BA-6871-01 NUAK2 1 205311705 LEMD1 1 205420574 39 157 SOMATIC GRCh37 NUAK2-LEMD1
+TCGA-BA-6871-01 BAIAP2 17 81086580 TBCD 17 82889668 in-frame 38 148 SOMATIC GRCh37 BAIAP2-TBCD
+TCGA-BA-6871-01 SCNN1A 12 6348727 DCP1B 12 1946286 in-frame 8 78 SOMATIC GRCh37 SCNN1A-DCP1B
+TCGA-BA-6871-01 NR4A1 12 52041929 IL20RB 3 136980466 in-frame 9 17 SOMATIC GRCh37 NR4A1-IL20RB
+TCGA-BA-6871-01 ZNF76 6 35259727 ANKS1A 6 35017473 1 9 SOMATIC GRCh37 ZNF76-ANKS1A
+TCGA-BA-6872-01 SELENOW 19 47778814 EHD2 19 47740881 frameshift 21 92 SOMATIC GRCh37 SELENOW-EHD2
+TCGA-BA-6872-01 LYPD1 2 132668400 NCKAP5 2 132732051 in-frame 3 11 SOMATIC GRCh37 LYPD1-NCKAP5
+TCGA-BA-6872-01 EGFR 7 55019365 DYM 18 49391645 frameshift 1 14 SOMATIC GRCh37 EGFR-DYM
+TCGA-BA-6872-01 HIPK3 11 33257889 WT1-AS 11 32452021 1 5 SOMATIC GRCh37 HIPK3-WT1-AS
+TCGA-BA-6873-01 ALDH1A3 15 100887712 IGF1R 15 98891325 frameshift 1 3 SOMATIC GRCh37 ALDH1A3-IGF1R
+TCGA-BA-6873-01 LTBP3 11 65553701 CERS3 15 100402865 in-frame 1 3 SOMATIC GRCh37 LTBP3-CERS3
+TCGA-BA-7269-01 FOXN2 2 48314814 PLB1 2 28640927 30 79 SOMATIC GRCh37 FOXN2-PLB1
+TCGA-BA-7269-01 MARK2 11 63839560 BPIFA2 20 33178147 frameshift 12 36 SOMATIC GRCh37 MARK2-BPIFA2
+TCGA-BA-7269-01 TAOK1 17 29467216 PARD6G 18 80183150 frameshift 6 12 SOMATIC GRCh37 TAOK1-PARD6G
+TCGA-BA-A4IG-01 MAP2K2 19 4110509 PSMD9 12 121915856 in-frame 40 296 SOMATIC GRCh37 MAP2K2-PSMD9
+TCGA-BA-A4IG-01 TNS4 17 40487036 CCR7 17 40555818 frameshift 1 7 SOMATIC GRCh37 TNS4-CCR7
+TCGA-BA-A4IG-01 CMTM4 16 66696340 SULT1E1 4 69857653 2 2 SOMATIC GRCh37 CMTM4-SULT1E1
+TCGA-BA-A4II-01 GSE1 16 85613398 EMC8 16 85789050 frameshift 23 113 SOMATIC GRCh37 GSE1-EMC8
+TCGA-BA-A4II-01 MARK2 11 63900678 C11orf84 11 63826928 frameshift 6 90 SOMATIC GRCh37 MARK2-C11orf84
+TCGA-BA-A4II-01 AKAP9 7 91941147 ANKIB1 7 92294889 3 10 SOMATIC GRCh37 AKAP9-ANKIB1
+TCGA-BA-A4II-01 WRAP53 17 7686078 MPDU1 17 7591851 3 6 SOMATIC GRCh37 WRAP53-MPDU1
+TCGA-BA-A4II-01 KLHDC4 16 87765792 CA5A 16 87902520 in-frame 2 9 SOMATIC GRCh37 KLHDC4-CA5A
+TCGA-BA-A4II-01 TOP2A 17 40416740 TLK2 17 62560016 in-frame 1 2 SOMATIC GRCh37 TOP2A-TLK2
+TCGA-BA-A6D8-01 DEDD 1 161130815 UFC1 1 161153926 13 39 SOMATIC GRCh37 DEDD-UFC1
+TCGA-BA-A6D8-01 PCNX1 14 71103669 TTLL5 14 75954424 frameshift 6 17 SOMATIC GRCh37 PCNX1-TTLL5
+TCGA-BA-A6DB-01 DLG1 3 197282679 TMEM44 3 194623695 in-frame 1 3 SOMATIC GRCh37 DLG1-TMEM44
+TCGA-BA-A6DE-01 C18orf8 18 23509279 PSPC1 13 19772543 in-frame 16 121 SOMATIC GRCh37 C18orf8-PSPC1
+TCGA-BA-A6DE-01 MAP2 2 209424276 ICA1L 2 202816009 9 45 SOMATIC GRCh37 MAP2-ICA1L
+TCGA-BA-A6DJ-01 UBE4B 1 10033694 PEX14 1 10536213 in-frame 12 43 SOMATIC GRCh37 UBE4B-PEX14
+TCGA-BA-A6DJ-01 VMP1 17 59817773 TUBD1 17 59878334 frameshift 5 21 SOMATIC GRCh37 VMP1-TUBD1
+TCGA-BA-A6DL-01 PARL 3 183884722 ABCC5 3 184014447 6 13 SOMATIC GRCh37 PARL-ABCC5
+TCGA-BA-A6DL-01 CLTA 9 36204179 GNE 9 36249397 frameshift 1 6 SOMATIC GRCh37 CLTA-GNE
+TCGA-BA-A8YP-01 PRPSAP2 17 18867334 PLLP 16 57258584 frameshift 16 33 SOMATIC GRCh37 PRPSAP2-PLLP
+TCGA-BA-A8YP-01 NRIP1 21 15064745 GDPD1 17 59245414 11 29 SOMATIC GRCh37 NRIP1-GDPD1
+TCGA-BA-A8YP-01 ZFR 5 32379115 PLEKHG4B 5 181514 frameshift 6 17 SOMATIC GRCh37 ZFR-PLEKHG4B
+TCGA-BA-A8YP-01 KBTBD2 7 32891536 PDE1C 7 32169956 5 8 SOMATIC GRCh37 KBTBD2-PDE1C
+TCGA-BA-A8YP-01 KDM6A X 44974715 DLL1 6 170286298 frameshift 4 10 SOMATIC GRCh37 KDM6A-DLL1
+TCGA-BA-A8YP-01 DANCR 4 52712959 GTF3C3 2 196770039 5 5 SOMATIC GRCh37 DANCR-GTF3C3
+TCGA-BA-A8YP-01 RSF1 11 77820528 TENM4 11 78738570 frameshift 3 5 SOMATIC GRCh37 RSF1-TENM4
+TCGA-BB-4217-01 TUBD1 17 59886083 INPP5D 2 233182410 frameshift 5 14 SOMATIC GRCh37 TUBD1-INPP5D
+TCGA-BB-4223-01 PAN3 13 28139087 NTRK2 9 84934162 in-frame 7 5 SOMATIC GRCh37 PAN3-NTRK2
+TCGA-BB-4223-01 FAM69A 1 92961376 LRRC8D 1 89843638 4 11 SOMATIC GRCh37 FAM69A-LRRC8D
+TCGA-BB-4223-01 OBSCN 1 228224734 CASZ1 1 10665571 in-frame 3 15 SOMATIC GRCh37 OBSCN-CASZ1
+TCGA-BB-4223-01 ATP11B 3 182869331 NAALADL2 3 175655481 3 10 SOMATIC GRCh37 ATP11B-NAALADL2
+TCGA-BB-4224-01 PACS2 14 105353733 DIO3OS 14 101552757 16 59 SOMATIC GRCh37 PACS2-DIO3OS
+TCGA-BB-4224-01 NOTCH1 9 136544024 SDCCAG3 9 136407938 frameshift 10 37 SOMATIC GRCh37 NOTCH1-SDCCAG3
+TCGA-BB-4224-01 ATF7 12 53626280 ATP5G2 12 53676660 9 33 SOMATIC GRCh37 ATF7-ATP5G2
+TCGA-BB-4225-01 KCNQ1 11 2445484 METTL15 11 28526475 10 52 SOMATIC GRCh37 KCNQ1-METTL15
+TCGA-BB-4227-01 MSI2 17 57401471 UTP18 17 51296965 in-frame 11 65 SOMATIC GRCh37 MSI2-UTP18
+TCGA-BB-4227-01 GLS 2 190924593 MYO1B 2 191276887 12 60 SOMATIC GRCh37 GLS-MYO1B
+TCGA-BB-4227-01 RAP2B 3 153163057 ANAPC16 10 72230366 in-frame 7 27 SOMATIC GRCh37 RAP2B-ANAPC16
+TCGA-BB-4227-01 RAP2B 3 153163577 ASCC1 10 72216072 6 16 SOMATIC GRCh37 RAP2B-ASCC1
+TCGA-BB-4227-01 TTLL11 9 122039272 NDUFA8 9 122148277 frameshift 2 16 SOMATIC GRCh37 TTLL11-NDUFA8
+TCGA-BB-7861-01 PUM1 1 30992390 KIAA1211 4 56323377 frameshift 7 14 SOMATIC GRCh37 PUM1-KIAA1211
+TCGA-BB-7861-01 TMLHE X 155513986 NEDD9 6 11193692 frameshift 2 8 SOMATIC GRCh37 TMLHE-NEDD9
+TCGA-BB-7861-01 HERC4 10 67990211 CTNNA3 10 65920617 frameshift 1 9 SOMATIC GRCh37 HERC4-CTNNA3
+TCGA-BB-7866-01 EIF2S2 20 34098498 NCOA6 20 34743341 in-frame 11 29 SOMATIC GRCh37 EIF2S2-NCOA6
+TCGA-BB-7866-01 TAF4 20 61997550 STX16 20 58667490 in-frame 2 42 SOMATIC GRCh37 TAF4-STX16
+TCGA-BB-7866-01 XRN1 3 142347234 GK5 3 142215692 frameshift 1 4 SOMATIC GRCh37 XRN1-GK5
+TCGA-BB-7871-01 POLH 6 43615525 EZR 6 158766444 5 16 SOMATIC GRCh37 POLH-EZR
+TCGA-BB-7871-01 ADK 10 74224591 TAF1D 11 93732291 2 4 SOMATIC GRCh37 ADK-TAF1D
+TCGA-BB-7872-01 RBBP8 18 22936960 TAF4B 18 26265170 in-frame 7 32 SOMATIC GRCh37 RBBP8-TAF4B
+TCGA-BB-7872-01 TP53TG1 7 87341523 ABCB1 7 87553932 6 21 SOMATIC GRCh37 TP53TG1-ABCB1
+TCGA-BB-8596-01 SF1 11 64766900 HRASLS2 11 63558660 in-frame 25 164 SOMATIC GRCh37 SF1-HRASLS2
+TCGA-BB-A5HY-01 DTX2 7 76463709 ZP3 7 76425052 29 342 SOMATIC GRCh37 DTX2-ZP3
+TCGA-BB-A5HY-01 SIN3A 15 75451423 SNUPN 15 75621056 15 36 SOMATIC GRCh37 SIN3A-SNUPN
+TCGA-BB-A5HY-01 BDP1 5 71483896 PMCHL2 5 71377506 9 47 SOMATIC GRCh37 BDP1-PMCHL2
+TCGA-BB-A5HY-01 SLC25A17 22 40799023 DMC1 22 38569390 1 7 SOMATIC GRCh37 SLC25A17-DMC1
+TCGA-BB-A5HY-01 NIN 14 50770388 SAV1 14 50665619 in-frame 1 3 SOMATIC GRCh37 NIN-SAV1
+TCGA-C9-A47Z-01 AK3 9 4740937 IL33 9 6241684 8 197 SOMATIC GRCh37 AK3-IL33
+TCGA-C9-A47Z-01 NDRG3 20 36746045 CPLX1 4 792608 5 9 SOMATIC GRCh37 NDRG3-CPLX1
+TCGA-CN-4723-01 DNM1 9 128203631 LCN2 9 128151638 in-frame 35 120 SOMATIC GRCh37 DNM1-LCN2
+TCGA-CN-4723-01 KIAA0319L 1 35554350 DLGAP3 1 34869089 frameshift 6 79 SOMATIC GRCh37 KIAA0319L-DLGAP3
+TCGA-CN-4723-01 CACNA2D1 7 82335135 NAALADL2 3 175737306 in-frame 11 15 SOMATIC GRCh37 CACNA2D1-NAALADL2
+TCGA-CN-4725-01 SLAIN2 4 48383784 CWH43 4 49003735 in-frame 20 173 SOMATIC GRCh37 SLAIN2-CWH43
+TCGA-CN-4725-01 ZNF236 18 76881512 ZNF627 19 11614527 frameshift 2 4 SOMATIC GRCh37 ZNF236-ZNF627
+TCGA-CN-4726-01 DSG1 18 31331867 DSP 6 7567781 in-frame 1 7 SOMATIC GRCh37 DSG1-DSP
+TCGA-CN-4726-01 CHMP5 9 33276564 SPINK4 9 33245112 in-frame 1 2 SOMATIC GRCh37 CHMP5-SPINK4
+TCGA-CN-4726-01 PPP1R9B 17 50149143 COL1A1 17 50192850 in-frame 1 2 SOMATIC GRCh37 PPP1R9B-COL1A1
+TCGA-CN-4728-01 NLGN4Y Y 14622591 VAMP7 Y 57126221 in-frame 2 3 SOMATIC GRCh37 NLGN4Y-VAMP7
+TCGA-CN-4728-01 TSC22D1 13 44573163 LETM1 4 1825683 frameshift 1 5 SOMATIC GRCh37 TSC22D1-LETM1
+TCGA-CN-4730-01 STARD3 17 39658522 OAZ1 19 2271782 in-frame 1 2 SOMATIC GRCh37 STARD3-OAZ1
+TCGA-CN-4731-01 SCAF1 19 49653705 FLT3LG 19 49478909 frameshift 14 56 SOMATIC GRCh37 SCAF1-FLT3LG
+TCGA-CN-4731-01 PPP3CC 8 22475624 PIWIL2 8 22281120 in-frame 5 31 SOMATIC GRCh37 PPP3CC-PIWIL2
+TCGA-CN-4731-01 WDR82 3 52287833 NT5DC2 3 52529334 5 29 SOMATIC GRCh37 WDR82-NT5DC2
+TCGA-CN-4731-01 SLC3A2 11 62856381 GNG3 11 62707700 4 6 SOMATIC GRCh37 SLC3A2-GNG3
+TCGA-CN-4733-01 RCL1 9 4793227 PLGRKT 9 5361888 frameshift 11 18 SOMATIC GRCh37 RCL1-PLGRKT
+TCGA-CN-4733-01 EPB41L1 20 36092813 TGM3 20 2309657 7 20 SOMATIC GRCh37 EPB41L1-TGM3
+TCGA-CN-4735-01 CDC42BPB 14 103003928 PPP4R3A 14 91461607 frameshift 8 36 SOMATIC GRCh37 CDC42BPB-PPP4R3A
+TCGA-CN-4735-01 TTC7B 14 90730075 PPP2R5C 14 101856686 frameshift 1 17 SOMATIC GRCh37 TTC7B-PPP2R5C
+TCGA-CN-4735-01 PSD3 8 18867674 ANO1 11 70087752 frameshift 2 6 SOMATIC GRCh37 PSD3-ANO1
+TCGA-CN-4736-01 MAP3K5 6 136791710 ARFIP1 4 152872452 in-frame 3 17 SOMATIC GRCh37 MAP3K5-ARFIP1
+TCGA-CN-4736-01 PRRG4 11 32830632 QSER1 11 32953857 in-frame 1 3 SOMATIC GRCh37 PRRG4-QSER1
+TCGA-CN-4737-01 TBC1D12 10 94442019 HELLS 10 94588229 in-frame 4 15 SOMATIC GRCh37 TBC1D12-HELLS
+TCGA-CN-4738-01 TLE3 15 70094532 THAP10 15 70882908 in-frame 20 55 SOMATIC GRCh37 TLE3-THAP10
+TCGA-CN-4739-01 TBC1D2 9 98228952 GABBR2 9 98496514 in-frame 2 18 SOMATIC GRCh37 TBC1D2-GABBR2
+TCGA-CN-4739-01 USP25 21 15811210 PCNT 21 46421970 in-frame 1 3 SOMATIC GRCh37 USP25-PCNT
+TCGA-CN-4741-01 PIP5K1C 19 3700297 MATK 19 3781672 in-frame 7 27 SOMATIC GRCh37 PIP5K1C-MATK
+TCGA-CN-4742-01 NCKAP1 2 183023806 PARD3 10 34696419 in-frame 29 116 SOMATIC GRCh37 NCKAP1-PARD3
+TCGA-CN-4742-01 ELMSAN1 14 73727458 ANO1 11 70111707 frameshift 2 11 SOMATIC GRCh37 ELMSAN1-ANO1
+TCGA-CN-4742-01 KLF7 2 207165467 ALS2 2 201768945 1 3 SOMATIC GRCh37 KLF7-ALS2
+TCGA-CN-5355-01 HMGXB3 5 150001179 CAPN1 11 65204683 in-frame 8 60 SOMATIC GRCh37 HMGXB3-CAPN1
+TCGA-CN-5355-01 SMG1P3 16 21519828 ME1 6 83352139 2 16 SOMATIC GRCh37 SMG1P3-ME1
+TCGA-CN-5355-01 BOP1 8 144276224 PLEC 8 143938692 frameshift 1 2 SOMATIC GRCh37 BOP1-PLEC
+TCGA-CN-5359-01 NEDD4L 18 58165861 CDH19 18 66572316 2 28 SOMATIC GRCh37 NEDD4L-CDH19
+TCGA-CN-5359-01 TSFM 12 57793073 OS9 12 57695962 in-frame 5 4 SOMATIC GRCh37 TSFM-OS9
+TCGA-CN-5359-01 LAMB1 7 107986022 ATXN7L1 7 105761463 in-frame 2 12 SOMATIC GRCh37 LAMB1-ATXN7L1
+TCGA-CN-5361-01 SRPK1 6 35920468 SOX2-OT 3 181563720 1 19 SOMATIC GRCh37 SRPK1-SOX2-OT
+TCGA-CN-5361-01 RNPEP 1 202004496 MICALL1 22 37932798 frameshift 1 1 SOMATIC GRCh37 RNPEP-MICALL1
+TCGA-CN-5363-01 NSF 17 46704854 STRADA 17 63690597 3 14 SOMATIC GRCh37 NSF-STRADA
+TCGA-CN-5363-01 CD44 11 35139370 TRIM44 11 35725924 in-frame 1 14 SOMATIC GRCh37 CD44-TRIM44
+TCGA-CN-5364-01 PTPN1 20 50510590 P2RX4 12 121217134 frameshift 11 49 SOMATIC GRCh37 PTPN1-P2RX4
+TCGA-CN-5364-01 INTS12 4 105691976 CXXC4 4 104472366 in-frame 1 13 SOMATIC GRCh37 INTS12-CXXC4
+TCGA-CN-5366-01 ESPN 1 6460110 FBLIM1 1 15784548 in-frame 1 41 SOMATIC GRCh37 ESPN-FBLIM1
+TCGA-CN-5367-01 CPT1A 11 68799218 KMT5B 11 68167178 frameshift 31 88 SOMATIC GRCh37 CPT1A-KMT5B
+TCGA-CN-5367-01 FCHSD2 11 73140031 GUCY1A2 11 106986131 frameshift 11 85 SOMATIC GRCh37 FCHSD2-GUCY1A2
+TCGA-CN-5367-01 MAX 14 65093708 RUNX2 6 45437947 frameshift 7 40 SOMATIC GRCh37 MAX-RUNX2
+TCGA-CN-5367-01 CEP126 11 101922760 YAP1 11 102162456 in-frame 8 12 SOMATIC GRCh37 CEP126-YAP1
+TCGA-CN-5367-01 RUNX2 6 45432019 MAX 14 65078036 frameshift 3 6 SOMATIC GRCh37 RUNX2-MAX
+TCGA-CN-5367-01 ARHGAP42 11 100795166 FAM168A 11 73468492 1 4 SOMATIC GRCh37 ARHGAP42-FAM168A
+TCGA-CN-5369-01 TNFSF14 19 6667113 GRAMD1A 19 35019191 in-frame 1 7 SOMATIC GRCh37 TNFSF14-GRAMD1A
+TCGA-CN-5370-01 THBS1 15 39584422 NRG1 8 32727949 frameshift 20 71 SOMATIC GRCh37 THBS1-NRG1
+TCGA-CN-5370-01 FOXP1 3 71493426 PXDNL 8 51499770 2 10 SOMATIC GRCh37 FOXP1-PXDNL
+TCGA-CN-5370-01 FOXN1 17 28506443 PRKDC 8 47785317 3 5 SOMATIC GRCh37 FOXN1-PRKDC
+TCGA-CN-6010-01 MAPK10 4 86453030 CCSER1 4 90308244 2 19 SOMATIC GRCh37 MAPK10-CCSER1
+TCGA-CN-6012-01 TIMELESS 12 56437466 GLS2 12 56471895 10 73 SOMATIC GRCh37 TIMELESS-GLS2
+TCGA-CN-6013-01 POLR2B 4 56990898 REST 4 56966656 frameshift 23 43 SOMATIC GRCh37 POLR2B-REST
+TCGA-CN-6013-01 NFYC 1 40691867 CTPS1 1 41001029 3 33 SOMATIC GRCh37 NFYC-CTPS1
+TCGA-CN-6017-01 TNNT3 11 1934885 COL1A1 17 50197994 in-frame 1000 1000 SOMATIC GRCh37 TNNT3-COL1A1
+TCGA-CN-6018-01 SMURF1 7 99143726 AZGP1 7 99972006 in-frame 6 31 SOMATIC GRCh37 SMURF1-AZGP1
+TCGA-CN-6018-01 SMURF1 7 99143726 GJC3 7 99923603 in-frame 1 13 SOMATIC GRCh37 SMURF1-GJC3
+TCGA-CN-6020-01 MIRLET7BHG 22 46103249 SCUBE1 22 43339235 7 39 SOMATIC GRCh37 MIRLET7BHG-SCUBE1
+TCGA-CN-6020-01 NSD3 8 38304587 ASH2L 8 38143739 1 10 SOMATIC GRCh37 NSD3-ASH2L
+TCGA-CN-6022-01 IQCH 15 67261394 MAP2K5 15 67693518 in-frame 1 3 SOMATIC GRCh37 IQCH-MAP2K5
+TCGA-CN-6023-01 NDUFAF6 8 94975415 DPY19L4 8 94726331 2 5 SOMATIC GRCh37 NDUFAF6-DPY19L4
+TCGA-CN-6024-01 SPEN 1 15848150 C1orf64 1 16005919 frameshift 30 77 SOMATIC GRCh37 SPEN-C1orf64
+TCGA-CN-6024-01 CBFA2T2 20 33490301 HM13 20 31544947 frameshift 9 28 SOMATIC GRCh37 CBFA2T2-HM13
+TCGA-CN-6024-01 GAPDH 12 6537010 TNC 9 115021267 in-frame 1 9 SOMATIC GRCh37 GAPDH-TNC
+TCGA-CN-6989-01 TMSB10 2 84905718 COL6A2 21 46111450 1 3 SOMATIC GRCh37 TMSB10-COL6A2
+TCGA-CN-6992-01 IVNS1ABP 1 185299710 BAHCC1 17 81426800 in-frame 12 31 SOMATIC GRCh37 IVNS1ABP-BAHCC1
+TCGA-CN-6992-01 TPX2 20 31742647 UNC5D 8 35549292 3 7 SOMATIC GRCh37 TPX2-UNC5D
+TCGA-CN-6992-01 DESI2 1 244653355 C1orf101 1 244635489 in-frame 1 12 SOMATIC GRCh37 DESI2-C1orf101
+TCGA-CN-6992-01 MED13 17 61962752 INTS2 17 61912070 frameshift 1000 1000 SOMATIC GRCh37 MED13-INTS2
+TCGA-CN-6994-01 PHF21A 11 45945840 GLIS2 16 4336725 frameshift 4 29 SOMATIC GRCh37 PHF21A-GLIS2
+TCGA-CN-6994-01 TYMP 22 50529904 ATP8B4 15 49987549 1 10 SOMATIC GRCh37 TYMP-ATP8B4
+TCGA-CN-6994-01 FKBP3 14 45129794 FANCM 14 45148837 in-frame 1 3 SOMATIC GRCh37 FKBP3-FANCM
+TCGA-CN-6995-01 ANO1 11 70132079 FOLR3 11 72135947 2 25 SOMATIC GRCh37 ANO1-FOLR3
+TCGA-CN-6997-01 LYN 8 55953984 NTRK3 15 88033045 in-frame 24 146 SOMATIC GRCh37 LYN-NTRK3
+TCGA-CN-A498-01 NOTCH1 9 136511152 MAPK1 22 21788808 frameshift 3 12 SOMATIC GRCh37 NOTCH1-MAPK1
+TCGA-CN-A498-01 MAPK1 22 21799012 NOTCH1 9 136519565 frameshift 1 7 SOMATIC GRCh37 MAPK1-NOTCH1
+TCGA-CN-A499-01 VCL 10 74043153 SFXN2 10 102726612 in-frame 2 7 SOMATIC GRCh37 VCL-SFXN2
+TCGA-CN-A49A-01 STK39 2 168012634 NCKAP5 2 132732051 in-frame 8 35 SOMATIC GRCh37 STK39-NCKAP5
+TCGA-CN-A49A-01 GPHN 14 67023675 ATP6V1D 14 67353040 frameshift 1 7 SOMATIC GRCh37 GPHN-ATP6V1D
+TCGA-CN-A49C-01 MACROD1 11 64151239 TCN1 11 59854835 in-frame 112 486 SOMATIC GRCh37 MACROD1-TCN1
+TCGA-CN-A49C-01 CPT1A 11 68781771 P4HA3 11 74289130 frameshift 3 8 SOMATIC GRCh37 CPT1A-P4HA3
+TCGA-CN-A49C-01 ERBB2 17 39717480 IKZF3 17 39792933 frameshift 1 9 SOMATIC GRCh37 ERBB2-IKZF3
+TCGA-CN-A63T-01 SIL1 5 139121035 DNAJC18 5 139414272 in-frame 7 13 SOMATIC GRCh37 SIL1-DNAJC18
+TCGA-CN-A63T-01 CSTF3 11 33090532 CCDC73 11 32760258 2 2 SOMATIC GRCh37 CSTF3-CCDC73
+TCGA-CN-A63U-01 OCIAD1 4 48831249 GLIPR2 9 36162362 15 131 SOMATIC GRCh37 OCIAD1-GLIPR2
+TCGA-CN-A63U-01 SLC25A17 22 40792525 RBX1 22 40967799 frameshift 12 60 SOMATIC GRCh37 SLC25A17-RBX1
+TCGA-CN-A63W-01 COL17A1 10 104062258 CFAP43 10 104167737 frameshift 1 9 SOMATIC GRCh37 COL17A1-CFAP43
+TCGA-CN-A63W-01 PEAK1 15 77420006 USP31 16 23102463 1 9 SOMATIC GRCh37 PEAK1-USP31
+TCGA-CN-A63W-01 OXR1 8 106359636 VPS13B 8 99699525 frameshift 1 3 SOMATIC GRCh37 OXR1-VPS13B
+TCGA-CN-A641-01 SPRR2G 1 153149904 SPRR1B 1 153032460 in-frame 1000 1000 SOMATIC GRCh37 SPRR2G-SPRR1B
+TCGA-CN-A642-01 MOB3A 19 2076811 STK11 19 1216268 frameshift 13 71 SOMATIC GRCh37 MOB3A-STK11
+TCGA-CN-A6UY-01 CBFA2T2 20 33490301 REM1 20 31476227 1 6 SOMATIC GRCh37 CBFA2T2-REM1
+TCGA-CQ-5323-01 CPT1A 11 68773265 SHANK2 11 71174844 6 55 SOMATIC GRCh37 CPT1A-SHANK2
+TCGA-CQ-5323-01 CPT1A 11 68839552 FGF3 11 69816423 1 17 SOMATIC GRCh37 CPT1A-FGF3
+TCGA-CQ-5323-01 FCHSD2 11 72889829 NUMA1 11 72006263 in-frame 2 9 SOMATIC GRCh37 FCHSD2-NUMA1
+TCGA-CQ-5323-01 RNF121 11 71929124 PPFIA1 11 70372212 1 10 SOMATIC GRCh37 RNF121-PPFIA1
+TCGA-CQ-5326-01 MTERF1 7 91880055 PHTF2 7 77893608 frameshift 2 3 SOMATIC GRCh37 MTERF1-PHTF2
+TCGA-CQ-5326-01 RWDD4 4 183650984 SORBS2 4 185652728 in-frame 1 5 SOMATIC GRCh37 RWDD4-SORBS2
+TCGA-CQ-5332-01 PANX1 11 94129493 HEPHL1 11 94111537 in-frame 4 41 SOMATIC GRCh37 PANX1-HEPHL1
+TCGA-CQ-5332-01 OSBPL1A 18 24225042 RIOK3 18 23473429 in-frame 2 15 SOMATIC GRCh37 OSBPL1A-RIOK3
+TCGA-CQ-5332-01 PARP1 1 226374226 LIN9 1 226250919 in-frame 4 6 SOMATIC GRCh37 PARP1-LIN9
+TCGA-CQ-5333-01 EPS8L2 11 709608 AGPAT2 9 136674807 frameshift 95 542 SOMATIC GRCh37 EPS8L2-AGPAT2
+TCGA-CQ-5334-01 PDE7A 8 65779720 NRG1 8 32727949 in-frame 4 23 SOMATIC GRCh37 PDE7A-NRG1
+TCGA-CQ-6219-01 AKAP13 15 85380798 RFX7 15 56087509 3 56 SOMATIC GRCh37 AKAP13-RFX7
+TCGA-CQ-6220-01 CTSA 20 45895133 WFDC3 20 45789945 frameshift 1 6 SOMATIC GRCh37 CTSA-WFDC3
+TCGA-CQ-6223-01 SNAPC1 14 61768740 FLJ22447 14 61650962 4 46 SOMATIC GRCh37 SNAPC1-FLJ22447
+TCGA-CQ-6224-01 PTPRD 9 9938507 CYGB 17 76528611 1 30 SOMATIC GRCh37 PTPRD-CYGB
+TCGA-CQ-6224-01 ALG8 11 78124021 FGF19 11 69699576 frameshift 2 7 SOMATIC GRCh37 ALG8-FGF19
+TCGA-CQ-6225-01 EIF2AK4 15 39939617 EPB42 15 43203275 frameshift 3 17 SOMATIC GRCh37 EIF2AK4-EPB42
+TCGA-CQ-6225-01 DUS1L 17 82060701 CCDC57 17 82101866 in-frame 1 6 SOMATIC GRCh37 DUS1L-CCDC57
+TCGA-CQ-6225-01 MYO1B 2 191350225 ZNF536 19 30443561 1 3 SOMATIC GRCh37 MYO1B-ZNF536
+TCGA-CQ-6225-01 AP2B1 17 35594067 RAB20 13 110524197 in-frame 1 2 SOMATIC GRCh37 AP2B1-RAB20
+TCGA-CQ-6227-01 FRMD6 14 51570410 BPIFB1 20 33286033 14 239 SOMATIC GRCh37 FRMD6-BPIFB1
+TCGA-CQ-6228-01 PANX1 11 94153630 CEP126 11 101944265 frameshift 31 126 SOMATIC GRCh37 PANX1-CEP126
+TCGA-CQ-6228-01 YIPF1 1 53878315 YTHDF2 1 28768929 frameshift 31 80 SOMATIC GRCh37 YIPF1-YTHDF2
+TCGA-CQ-6228-01 EGLN1 1 231420998 C1orf131 1 231239188 frameshift 6 28 SOMATIC GRCh37 EGLN1-C1orf131
+TCGA-CQ-6228-01 GALK2 15 49292537 TERB2 15 44978489 in-frame 4 16 SOMATIC GRCh37 GALK2-TERB2
+TCGA-CQ-6228-01 LYST 1 235716712 DISC1 1 231795242 frameshift 3 7 SOMATIC GRCh37 LYST-DISC1
+TCGA-CQ-6228-01 NCOA2 8 70403700 DCUN1D5 11 103083326 2 5 SOMATIC GRCh37 NCOA2-DCUN1D5
+TCGA-CQ-6229-01 SYNE2 14 64020093 ITPK1 14 92993997 in-frame 3 39 SOMATIC GRCh37 SYNE2-ITPK1
+TCGA-CQ-7063-01 CDKN2A 9 21974678 MTAP 9 21815433 in-frame 18 48 SOMATIC GRCh37 CDKN2A-MTAP
+TCGA-CQ-7065-01 NXN 17 979319 WRAP53 17 7700741 in-frame 23 173 SOMATIC GRCh37 NXN-WRAP53
+TCGA-CQ-7065-01 NOTCH2 1 120069334 SPAG17 1 117981401 in-frame 6 47 SOMATIC GRCh37 NOTCH2-SPAG17
+TCGA-CQ-7065-01 BACH1 21 29329693 DSCR3 21 37240639 in-frame 5 25 SOMATIC GRCh37 BACH1-DSCR3
+TCGA-CQ-7067-01 COLGALT1 19 17559421 PGLS 19 17516173 frameshift 1 17 SOMATIC GRCh37 COLGALT1-PGLS
+TCGA-CQ-7068-01 ZNF57 19 2901048 MRE11 11 94461036 frameshift 1 1 SOMATIC GRCh37 ZNF57-MRE11
+TCGA-CQ-7069-01 SERTAD2 2 64750281 TGFA 2 70465733 8 99 SOMATIC GRCh37 SERTAD2-TGFA
+TCGA-CQ-7071-01 ACTG1 17 81512232 SPRR1B 1 153032327 1 9 SOMATIC GRCh37 ACTG1-SPRR1B
+TCGA-CQ-7072-01 TMEM117 12 43944342 KIF16B 20 16312418 frameshift 4 24 SOMATIC GRCh37 TMEM117-KIF16B
+TCGA-CQ-7072-01 TBL1X X 9501849 WWC3 X 10090771 1 6 SOMATIC GRCh37 TBL1X-WWC3
+TCGA-CQ-A4C6-01 CHSY1 15 101235255 PPP1CA 11 67401199 in-frame 4 49 SOMATIC GRCh37 CHSY1-PPP1CA
+TCGA-CQ-A4C9-01 PAIP1 5 43555830 TMEM267 5 43446557 in-frame 2 22 SOMATIC GRCh37 PAIP1-TMEM267
+TCGA-CQ-A4C9-01 ELP4 11 31650221 EIF3M 11 32594914 frameshift 1 12 SOMATIC GRCh37 ELP4-EIF3M
+TCGA-CQ-A4C9-01 UXS1 2 106158058 TMEM241 18 23399647 in-frame 1 5 SOMATIC GRCh37 UXS1-TMEM241
+TCGA-CQ-A4C9-01 CIR1 2 174395601 NFE2L2 2 177283805 1000 1000 SOMATIC GRCh37 CIR1-NFE2L2
+TCGA-CQ-A4CA-01 GNA12 7 2843853 PHC3 3 170178938 frameshift 2 23 SOMATIC GRCh37 GNA12-PHC3
+TCGA-CQ-A4CB-01 PPP1R2 3 195542904 GMNC 3 190860858 frameshift 1 4 SOMATIC GRCh37 PPP1R2-GMNC
+TCGA-CQ-A4CG-01 MICU1 10 72475100 DNAJB12 10 72336696 frameshift 1 12 SOMATIC GRCh37 MICU1-DNAJB12
+TCGA-CQ-A4CH-01 EHBP1 2 62874532 MDH1 2 63594488 in-frame 28 137 SOMATIC GRCh37 EHBP1-MDH1
+TCGA-CQ-A4CH-01 CHST10 2 100402564 MAP4K4 2 101823928 in-frame 19 81 SOMATIC GRCh37 CHST10-MAP4K4
+TCGA-CQ-A4CH-01 ITSN1 21 33642713 CHODL 21 17917220 1 28 SOMATIC GRCh37 ITSN1-CHODL
+TCGA-CQ-A4CH-01 PAPLN 14 73274459 MYL4 17 47209389 4 13 SOMATIC GRCh37 PAPLN-MYL4
+TCGA-CQ-A4CH-01 TRAPPC10 21 44012560 MDS2 1 23639680 frameshift 2 6 SOMATIC GRCh37 TRAPPC10-MDS2
+TCGA-CQ-A4CI-01 SH2D3A 19 6767387 GPM6A 4 175651987 7 38 SOMATIC GRCh37 SH2D3A-GPM6A
+TCGA-CR-5243-01 COPS7A 12 6724818 RPLP0 12 120197462 in-frame 1 1 SOMATIC GRCh37 COPS7A-RPLP0
+TCGA-CR-5247-01 CLN3 16 28484006 C15orf32 15 92500358 5 18 SOMATIC GRCh37 CLN3-C15orf32
+TCGA-CR-5247-01 TFDP2 3 142093061 COG5 7 107324521 frameshift 2 29 SOMATIC GRCh37 TFDP2-COG5
+TCGA-CR-5247-01 NADSYN1 11 71458544 GSTP1 11 67584685 frameshift 1 3 SOMATIC GRCh37 NADSYN1-GSTP1
+TCGA-CR-5248-01 MAGI1 3 65621972 DPH3 3 16260829 frameshift 2 3 SOMATIC GRCh37 MAGI1-DPH3
+TCGA-CR-5250-01 SESN1 6 109093795 CENPW 6 126346205 in-frame 1 3 SOMATIC GRCh37 SESN1-CENPW
+TCGA-CR-5250-01 ZFP36 19 39406928 OAZ1 19 2271385 frameshift 1 1 SOMATIC GRCh37 ZFP36-OAZ1
+TCGA-CR-6467-01 TRIP12 2 229879982 PID1 2 229155964 frameshift 12 57 SOMATIC GRCh37 TRIP12-PID1
+TCGA-CR-6467-01 ABCC4 13 95177707 ABCB4 7 87409392 in-frame 4 73 SOMATIC GRCh37 ABCC4-ABCB4
+TCGA-CR-6467-01 TTC12 11 113344440 LUC7L2 7 139412551 in-frame 3 16 SOMATIC GRCh37 TTC12-LUC7L2
+TCGA-CR-6467-01 MTDH 8 97644887 MATN2 8 97961408 in-frame 4 5 SOMATIC GRCh37 MTDH-MATN2
+TCGA-CR-6467-01 CLDN10 13 95577338 TTC12 11 113350073 in-frame 2 3 SOMATIC GRCh37 CLDN10-TTC12
+TCGA-CR-6470-01 PLEKHA5 12 19132450 DCTN2 12 57535845 frameshift 1 4 SOMATIC GRCh37 PLEKHA5-DCTN2
+TCGA-CR-6473-01 FGFR3 4 1806934 TACC3 4 1737598 in-frame 268 1764 SOMATIC GRCh37 FGFR3-TACC3
+TCGA-CR-6474-01 TFB2M 1 246564346 SMYD3 1 246335474 in-frame 21 96 SOMATIC GRCh37 TFB2M-SMYD3
+TCGA-CR-6474-01 MVP 16 29831073 ZNF267 16 31914476 frameshift 15 54 SOMATIC GRCh37 MVP-ZNF267
+TCGA-CR-6478-01 TMBIM4 12 66169855 TMEM131 2 97814388 frameshift 10 96 SOMATIC GRCh37 TMBIM4-TMEM131
+TCGA-CR-6478-01 ANKRD23 2 96857888 FAM178B 2 96902707 16 44 SOMATIC GRCh37 ANKRD23-FAM178B
+TCGA-CR-6478-01 KIF21A 12 39442927 TSPAN8 12 71157787 16 42 SOMATIC GRCh37 KIF21A-TSPAN8
+TCGA-CR-6478-01 GPI 19 34396430 EYS 6 65057727 in-frame 9 56 SOMATIC GRCh37 GPI-EYS
+TCGA-CR-6478-01 HSD17B12 11 43816391 TP53I11 11 44939190 4 12 SOMATIC GRCh37 HSD17B12-TP53I11
+TCGA-CR-6478-01 CAV2 7 116500447 TES 7 116249020 in-frame 2 5 SOMATIC GRCh37 CAV2-TES
+TCGA-CR-6480-01 C1orf174 1 3892883 RAD18 3 8881459 frameshift 30 106 SOMATIC GRCh37 C1orf174-RAD18
+TCGA-CR-6480-01 PPARA 22 46151970 SLC16A7 12 59655152 4 44 SOMATIC GRCh37 PPARA-SLC16A7
+TCGA-CR-6481-01 KIF21A 12 39331730 IGKJ3 2 88861257 frameshift 59 0 SOMATIC GRCh37 KIF21A-IGKJ3
+TCGA-CR-6481-01 CMC1 3 28241812 ZCWPW2 3 28435110 frameshift 2 12 SOMATIC GRCh37 CMC1-ZCWPW2
+TCGA-CR-6482-01 ABCB9 12 122966287 MPHOSPH9 12 123166789 1 7 SOMATIC GRCh37 ABCB9-MPHOSPH9
+TCGA-CR-6484-01 CDKL3 5 134319471 IGKJ2 2 88861559 in-frame 28 0 SOMATIC GRCh37 CDKL3-IGKJ2
+TCGA-CR-6484-01 AGAP1 2 235494849 UBE2F 2 237973092 7 49 SOMATIC GRCh37 AGAP1-UBE2F
+TCGA-CR-6487-01 SNHG19 16 2154860 CSF1R 5 150086607 33 262 SOMATIC GRCh37 SNHG19-CSF1R
+TCGA-CR-6487-01 TSC1 9 132921363 DOLPP1 9 129086709 in-frame 16 62 SOMATIC GRCh37 TSC1-DOLPP1
+TCGA-CR-6488-01 IP6K1 3 49786354 TRAIP 3 49840373 1 26 SOMATIC GRCh37 IP6K1-TRAIP
+TCGA-CR-6488-01 AATF 17 37031685 PCDH11X X 92618264 frameshift 2 12 SOMATIC GRCh37 AATF-PCDH11X
+TCGA-CR-7364-01 ASH2L 8 38110833 LINC03042 8 38516512 in-frame 6 10 SOMATIC GRCh37 ASH2L-LINC03042
+TCGA-CR-7364-01 EIF4EBP1 8 38030718 TACC1 8 38846699 frameshift 4 4 SOMATIC GRCh37 EIF4EBP1-TACC1
+TCGA-CR-7367-01 TFB2M 1 246548545 SMYD3 1 245929937 in-frame 28 39 SOMATIC GRCh37 TFB2M-SMYD3
+TCGA-CR-7367-01 TIAM1 21 31339243 PCBP3 21 45896208 7 19 SOMATIC GRCh37 TIAM1-PCBP3
+TCGA-CR-7367-01 XXYLT1 3 195156449 OPA1 3 193614723 in-frame 2 2 SOMATIC GRCh37 XXYLT1-OPA1
+TCGA-CR-7368-01 EGFR 7 55019365 SEPT14 7 55807258 in-frame 1 7 SOMATIC GRCh37 EGFR-SEPT14
+TCGA-CR-7370-01 SLBP 4 1694774 LETM1 4 1825683 in-frame 16 112 SOMATIC GRCh37 SLBP-LETM1
+TCGA-CR-7370-01 PSMD14 2 161385571 CCDC148 2 158220713 in-frame 1 4 SOMATIC GRCh37 PSMD14-CCDC148
+TCGA-CR-7371-01 ROCK1 18 21110818 RPL29 3 51995880 12 15 SOMATIC GRCh37 ROCK1-RPL29
+TCGA-CR-7371-01 SH3GL1 19 4400324 STAP2 19 4334044 in-frame 1000 1000 SOMATIC GRCh37 SH3GL1-STAP2
+TCGA-CR-7374-01 CREBBP 16 3850297 ATG10 5 82058495 in-frame 6 30 SOMATIC GRCh37 CREBBP-ATG10
+TCGA-CR-7374-01 IGKC 2 88857255 SPSB1 1 9356106 6 1 SOMATIC GRCh37 IGKC-SPSB1
+TCGA-CR-7374-01 CSDE1 1 114737999 CYB5B 16 69430154 4 5 SOMATIC GRCh37 CSDE1-CYB5B
+TCGA-CR-7374-01 TYW1 7 67195337 SIRPB2 20 1480065 frameshift 2 5 SOMATIC GRCh37 TYW1-SIRPB2
+TCGA-CR-7374-01 RALY 20 34031604 RPN2 20 37223878 1 8 SOMATIC GRCh37 RALY-RPN2
+TCGA-CR-7374-01 HSD11B1L 19 5687668 SAFB 19 5664022 in-frame 1 5 SOMATIC GRCh37 HSD11B1L-SAFB
+TCGA-CR-7376-01 APTX 9 33001567 NOL6 9 33472412 in-frame 6 9 SOMATIC GRCh37 APTX-NOL6
+TCGA-CR-7376-01 CNTFR 9 34581095 KIF24 9 34297114 1 19 SOMATIC GRCh37 CNTFR-KIF24
+TCGA-CR-7376-01 CHMP5 9 33276564 GALT 9 34646677 2 4 SOMATIC GRCh37 CHMP5-GALT
+TCGA-CR-7376-01 NFX1 9 33319127 ARHGEF39 9 35664126 frameshift 1 3 SOMATIC GRCh37 NFX1-ARHGEF39
+TCGA-CR-7376-01 UNC13B 9 35162305 DNAJB5 9 34993200 frameshift 1 1 SOMATIC GRCh37 UNC13B-DNAJB5
+TCGA-CR-7377-01 PARD3 10 34814876 ARMC4 10 27907777 frameshift 4 25 SOMATIC GRCh37 PARD3-ARMC4
+TCGA-CR-7377-01 ERC1 12 1116033 ANKRD26 10 27005723 frameshift 1 3 SOMATIC GRCh37 ERC1-ANKRD26
+TCGA-CR-7379-01 DSG1 18 31340025 DSCAS 18 31150799 6 12 SOMATIC GRCh37 DSG1-DSCAS
+TCGA-CR-7379-01 GAS6 13 113846527 ATP4B 13 113654942 in-frame 4 10 SOMATIC GRCh37 GAS6-ATP4B
+TCGA-CR-7379-01 NUDT3 6 34392264 CDH12 5 21817132 frameshift 1 9 SOMATIC GRCh37 NUDT3-CDH12
+TCGA-CR-7379-01 ZC3H4 19 47081513 SAE1 19 47203671 frameshift 1 4 SOMATIC GRCh37 ZC3H4-SAE1
+TCGA-CR-7380-01 IDH3A 15 78149430 SH2D7 15 78094116 in-frame 4 2 SOMATIC GRCh37 IDH3A-SH2D7
+TCGA-CR-7382-01 RNH1 11 507113 HRAS 11 533944 51 314 SOMATIC GRCh37 RNH1-HRAS
+TCGA-CR-7382-01 NFRKB 11 129892715 FEN1 11 61796922 in-frame 1 10 SOMATIC GRCh37 NFRKB-FEN1
+TCGA-CR-7383-01 DCUN1D4 4 51863709 GPM6B X 13785808 in-frame 9 49 SOMATIC GRCh37 DCUN1D4-GPM6B
+TCGA-CR-7383-01 PCMTD1 8 51898930 ARHGAP26 5 143207198 in-frame 2 1 SOMATIC GRCh37 PCMTD1-ARHGAP26
+TCGA-CR-7385-01 TRIM25 17 56892018 TRIM37 17 58982921 frameshift 14 43 SOMATIC GRCh37 TRIM25-TRIM37
+TCGA-CR-7386-01 MAP2K5 15 67543470 RAB27A 15 55234956 1 6 SOMATIC GRCh37 MAP2K5-RAB27A
+TCGA-CR-7388-01 RAP1GDS1 4 98352601 GSTCD 4 105845441 in-frame 4 9 SOMATIC GRCh37 RAP1GDS1-GSTCD
+TCGA-CR-7388-01 CBFB 16 67029813 ATP13A3 3 194462236 1 9 SOMATIC GRCh37 CBFB-ATP13A3
+TCGA-CR-7389-01 ADAM17 2 9555509 ITGB1BP1 2 9418732 1 12 SOMATIC GRCh37 ADAM17-ITGB1BP1
+TCGA-CR-7390-01 SHC1 1 154965543 EFNA3 1 155085091 frameshift 7 51 SOMATIC GRCh37 SHC1-EFNA3
+TCGA-CR-7390-01 SPIDR 8 47713641 SNX7 1 98760054 frameshift 7 20 SOMATIC GRCh37 SPIDR-SNX7
+TCGA-CR-7392-01 LRRC1 6 53795415 MLIP 6 54124473 in-frame 3 24 SOMATIC GRCh37 LRRC1-MLIP
+TCGA-CR-7392-01 CUX1 7 102115273 CAV2 7 116316432 2 11 SOMATIC GRCh37 CUX1-CAV2
+TCGA-CR-7392-01 ROCK2 2 11192148 LPIN1 2 11765533 frameshift 1 3 SOMATIC GRCh37 ROCK2-LPIN1
+TCGA-CR-7395-01 GNB1 1 1890820 NADK 1 1757310 11 15 SOMATIC GRCh37 GNB1-NADK
+TCGA-CR-7397-01 SCMH1 1 41186121 SHISA5 3 48501293 in-frame 2 34 SOMATIC GRCh37 SCMH1-SHISA5
+TCGA-CR-7397-01 ITCH 20 34424525 CASS4 20 56445900 frameshift 2 15 SOMATIC GRCh37 ITCH-CASS4
+TCGA-CR-7399-01 AK3 9 4722506 RCL1 9 4823548 in-frame 44 168 SOMATIC GRCh37 AK3-RCL1
+TCGA-CR-7399-01 DGCR2 22 19122128 ANO1 11 70103066 frameshift 28 123 SOMATIC GRCh37 DGCR2-ANO1
+TCGA-CR-7399-01 VTI1B 14 67656416 PLEKHH1 14 67585568 in-frame 7 47 SOMATIC GRCh37 VTI1B-PLEKHH1
+TCGA-CR-7401-01 APP 21 26021840 FRG2LP 18 14138856 12 80 SOMATIC GRCh37 APP-FRG2LP
+TCGA-CR-7402-01 DSG2 18 31541314 DSG4 18 31399272 in-frame 62 275 SOMATIC GRCh37 DSG2-DSG4
+TCGA-CR-7402-01 VCL 10 74043153 SEC24C 10 73766760 in-frame 30 103 SOMATIC GRCh37 VCL-SEC24C
+TCGA-CR-7404-01 EFNA1 1 155128069 FLAD1 1 154989560 frameshift 1 4 SOMATIC GRCh37 EFNA1-FLAD1
+TCGA-CV-5430-01 OSGIN2 8 89914746 RIPK2 8 89786593 in-frame 27 61 SOMATIC GRCh37 OSGIN2-RIPK2
+TCGA-CV-5430-01 PHF8 X 54022259 SLCO1C1 12 20717132 frameshift 1 7 SOMATIC GRCh37 PHF8-SLCO1C1
+TCGA-CV-5431-01 FBXL20 17 39401361 UNC45B 17 35171322 in-frame 33 117 SOMATIC GRCh37 FBXL20-UNC45B
+TCGA-CV-5431-01 IGHGP 14 105668254 NOTCH1 9 136508977 11 1 SOMATIC GRCh37 IGHGP-NOTCH1
+TCGA-CV-5431-01 TGFBRAP1 2 105296356 CCDC146 7 77236947 in-frame 1 3 SOMATIC GRCh37 TGFBRAP1-CCDC146
+TCGA-CV-5431-01 ERBB2 17 39715939 CTTN 11 70422940 in-frame 1 1 SOMATIC GRCh37 ERBB2-CTTN
+TCGA-CV-5432-01 PFKFB4 3 48521986 COL7A1 3 48571278 in-frame 1 5 SOMATIC GRCh37 PFKFB4-COL7A1
+TCGA-CV-5434-01 PTPRZ1 7 122055087 TSPAN33 7 129161679 in-frame 14 83 SOMATIC GRCh37 PTPRZ1-TSPAN33
+TCGA-CV-5434-01 ROCK1 18 21006351 DCC 18 53386043 in-frame 10 44 SOMATIC GRCh37 ROCK1-DCC
+TCGA-CV-5434-01 NLK 17 28043331 RAD51D 17 35106481 frameshift 3 10 SOMATIC GRCh37 NLK-RAD51D
+TCGA-CV-5434-01 NLK 17 28043331 RAD51L3-RFFL 17 35106481 frameshift 3 10 SOMATIC GRCh37 NLK-RAD51L3-RFFL
+TCGA-CV-5436-01 SLX4IP 20 10458231 SLC24A3 20 19280959 frameshift 2 12 SOMATIC GRCh37 SLX4IP-SLC24A3
+TCGA-CV-5436-01 AHR 7 17310123 TSPAN13 7 16783417 frameshift 1 3 SOMATIC GRCh37 AHR-TSPAN13
+TCGA-CV-5440-01 FHOD3 18 36687178 MS4A15 11 60763706 3 12 SOMATIC GRCh37 FHOD3-MS4A15
+TCGA-CV-5440-01 DTD1 20 18628233 RALGAPA2 20 20546832 in-frame 3 6 SOMATIC GRCh37 DTD1-RALGAPA2
+TCGA-CV-5440-01 USP8 15 50490525 MYEF2 15 48168839 in-frame 2 9 SOMATIC GRCh37 USP8-MYEF2
+TCGA-CV-5441-01 DDX1 2 15596763 C3orf67 3 58806456 in-frame 1 1 SOMATIC GRCh37 DDX1-C3orf67
+TCGA-CV-5442-01 PKP1 1 201332903 JUP 17 41755174 3 7 SOMATIC GRCh37 PKP1-JUP
+TCGA-CV-5443-01 ITCH 20 34471515 DEFB118 20 31372857 frameshift 47 258 SOMATIC GRCh37 ITCH-DEFB118
+TCGA-CV-5443-01 SLC26A11 17 80237594 OAF 11 120228868 in-frame 2 11 SOMATIC GRCh37 SLC26A11-OAF
+TCGA-CV-5443-01 PLGRKT 9 5431897 CD274 9 5456100 1 10 SOMATIC GRCh37 PLGRKT-CD274
+TCGA-CV-5444-01 ESYT2 7 158748194 CNTNAP2 7 147043907 in-frame 1 20 SOMATIC GRCh37 ESYT2-CNTNAP2
+TCGA-CV-5444-01 PRR4 12 11121010 SPSB2 12 6882287 2 9 SOMATIC GRCh37 PRR4-SPSB2
+TCGA-CV-5970-01 ACAP2 3 195442795 IQCG 3 197914042 frameshift 1 26 SOMATIC GRCh37 ACAP2-IQCG
+TCGA-CV-5970-01 HSPB11 1 53939985 ZCCHC11 1 52497183 frameshift 1 6 SOMATIC GRCh37 HSPB11-ZCCHC11
+TCGA-CV-5971-01 MYBPC2 19 50452003 DES 2 219421340 in-frame 1 9 SOMATIC GRCh37 MYBPC2-DES
+TCGA-CV-5973-01 NFYA 6 41094497 TSPO2 6 41042966 4 36 SOMATIC GRCh37 NFYA-TSPO2
+TCGA-CV-5973-01 OTUB1 11 63988752 RPS6KA4 11 64365301 in-frame 3 14 SOMATIC GRCh37 OTUB1-RPS6KA4
+TCGA-CV-5978-01 ADD1 4 2844024 ADK 10 74394141 7 30 SOMATIC GRCh37 ADD1-ADK
+TCGA-CV-5979-01 GABARAP 17 7241424 GPS2 17 7314659 28 63 SOMATIC GRCh37 GABARAP-GPS2
+TCGA-CV-5979-01 IPO9 1 201871327 CSRP1 1 201496304 1 1 SOMATIC GRCh37 IPO9-CSRP1
+TCGA-CV-6433-01 RALY 20 34031604 ASXL1 20 32428128 3 12 SOMATIC GRCh37 RALY-ASXL1
+TCGA-CV-6441-01 HSPB11 1 53923904 NDC1 1 53772489 in-frame 5 54 SOMATIC GRCh37 HSPB11-NDC1
+TCGA-CV-6441-01 OPA3 19 45584623 EML2 19 45642352 in-frame 3 30 SOMATIC GRCh37 OPA3-EML2
+TCGA-CV-6933-01 CLNS1A 11 77637590 DCBLD1 6 117532260 frameshift 2 1 SOMATIC GRCh37 CLNS1A-DCBLD1
+TCGA-CV-6935-01 ATAD2 8 123369058 ERBB4 2 211665477 frameshift 5 24 SOMATIC GRCh37 ATAD2-ERBB4
+TCGA-CV-6936-01 LMAN2L 2 96734409 FAM178B 2 96929320 in-frame 2 29 SOMATIC GRCh37 LMAN2L-FAM178B
+TCGA-CV-6937-01 PI4KA 22 20793193 CCDC74BP1 22 20592100 48 193 SOMATIC GRCh37 PI4KA-CCDC74BP1
+TCGA-CV-6937-01 FKBP1A 20 1392834 CDS2 20 5189067 frameshift 10 64 SOMATIC GRCh37 FKBP1A-CDS2
+TCGA-CV-6937-01 ATP11B 3 182869331 TFRC 3 196058632 in-frame 4 30 SOMATIC GRCh37 ATP11B-TFRC
+TCGA-CV-6937-01 SMPD4P1 22 20613663 KLHL22 22 20471515 6 10 SOMATIC GRCh37 SMPD4P1-KLHL22
+TCGA-CV-6937-01 KIAA1549L 11 33574873 WARS2 1 119076607 frameshift 4 10 SOMATIC GRCh37 KIAA1549L-WARS2
+TCGA-CV-6937-01 KLHL22 22 20464858 KIAA1549L 11 33656012 frameshift 1 5 SOMATIC GRCh37 KLHL22-KIAA1549L
+TCGA-CV-6938-01 MBD5 2 148021684 ACVR2A 2 147896301 1 6 SOMATIC GRCh37 MBD5-ACVR2A
+TCGA-CV-6939-01 ZNF718 4 131505 PLEKHG4B 5 139483 frameshift 4 28 SOMATIC GRCh37 ZNF718-PLEKHG4B
+TCGA-CV-6939-01 NAALADL1 11 65045822 PATL1 11 59654072 in-frame 1 14 SOMATIC GRCh37 NAALADL1-PATL1
+TCGA-CV-6939-01 LRP5 11 68446533 HSCB 22 28743882 in-frame 1 2 SOMATIC GRCh37 LRP5-HSCB
+TCGA-CV-6940-01 NAA25 12 112087683 SLC25A21 14 36684925 in-frame 18 154 SOMATIC GRCh37 NAA25-SLC25A21
+TCGA-CV-6940-01 FAM234A 16 249658 LUC7L 16 208188 2 24 SOMATIC GRCh37 FAM234A-LUC7L
+TCGA-CV-6941-01 EGFR 7 55019365 ACADM 1 75732644 in-frame 32 172 SOMATIC GRCh37 EGFR-ACADM
+TCGA-CV-6941-01 TBC1D22A 22 46997709 GCAT 22 37810027 in-frame 5 27 SOMATIC GRCh37 TBC1D22A-GCAT
+TCGA-CV-6941-01 LPP 3 188609844 P3H2 3 189995442 in-frame 2 32 SOMATIC GRCh37 LPP-P3H2
+TCGA-CV-6941-01 LIMK2 22 31258426 ATXN10 22 45806959 in-frame 3 22 SOMATIC GRCh37 LIMK2-ATXN10
+TCGA-CV-6941-01 TP63 3 189808526 CYTH3 7 6190531 frameshift 4 16 SOMATIC GRCh37 TP63-CYTH3
+TCGA-CV-6941-01 CELSR1 22 46463707 PACSIN2 22 42912157 4 12 SOMATIC GRCh37 CELSR1-PACSIN2
+TCGA-CV-6941-01 ATXN10 22 45740538 TUBGCP6 22 50228028 in-frame 2 13 SOMATIC GRCh37 ATXN10-TUBGCP6
+TCGA-CV-6941-01 FUS 16 31184396 PRSS36 16 31149731 in-frame 1 11 SOMATIC GRCh37 FUS-PRSS36
+TCGA-CV-6941-01 SH3BP1 22 37643788 CACNA1I 22 39661965 in-frame 2 7 SOMATIC GRCh37 SH3BP1-CACNA1I
+TCGA-CV-6941-01 ARHGEF2 1 155978067 SMG5 1 156274686 1 9 SOMATIC GRCh37 ARHGEF2-SMG5
+TCGA-CV-6941-01 PRR14L 22 31738387 SOX10 22 37983868 2 5 SOMATIC GRCh37 PRR14L-SOX10
+TCGA-CV-6941-01 SMARCB1 22 23825415 ACR 22 50744061 frameshift 1 8 SOMATIC GRCh37 SMARCB1-ACR
+TCGA-CV-6948-01 TTC38 22 46278661 NACAP1 8 101367623 33 136 SOMATIC GRCh37 TTC38-NACAP1
+TCGA-CV-6948-01 ZNF410 14 73909430 LIN52 14 74198922 in-frame 5 38 SOMATIC GRCh37 ZNF410-LIN52
+TCGA-CV-6948-01 YME1L1 10 27142387 ANKRD26 10 26995147 frameshift 4 37 SOMATIC GRCh37 YME1L1-ANKRD26
+TCGA-CV-6948-01 DGCR8 22 20080383 SGSM1 22 24844897 5 30 SOMATIC GRCh37 DGCR8-SGSM1
+TCGA-CV-6948-01 MKRN2 3 12576741 C12orf75 12 105326970 2 22 SOMATIC GRCh37 MKRN2-C12orf75
+TCGA-CV-6948-01 ERC1 12 991487 GRK3 22 25604377 1 17 SOMATIC GRCh37 ERC1-GRK3
+TCGA-CV-6948-01 LHPP 10 124484326 TANGO6 16 69022828 in-frame 2 11 SOMATIC GRCh37 LHPP-TANGO6
+TCGA-CV-6948-01 MRPS6 21 34073745 MYO3A 10 26201265 in-frame 2 11 SOMATIC GRCh37 MRPS6-MYO3A
+TCGA-CV-6948-01 SLC5A3 21 34073745 MYO3A 10 26201265 2 11 SOMATIC GRCh37 SLC5A3-MYO3A
+TCGA-CV-6948-01 ATP10D 4 47485519 GABRB1 4 47031914 1 3 SOMATIC GRCh37 ATP10D-GABRB1
+TCGA-CV-6950-01 ABL1 9 130714455 EXOSC2 9 130695492 frameshift 2 11 SOMATIC GRCh37 ABL1-EXOSC2
+TCGA-CV-6951-01 AAMDC 11 77842628 SCGB1D1 11 62192056 frameshift 1 4 SOMATIC GRCh37 AAMDC-SCGB1D1
+TCGA-CV-6953-01 USP9X X 41162877 MRPS31 13 40729601 frameshift 3 61 SOMATIC GRCh37 USP9X-MRPS31
+TCGA-CV-6953-01 S100A9 1 153358361 IGHG1 14 105742844 frameshift 3 59 SOMATIC GRCh37 S100A9-IGHG1
+TCGA-CV-6953-01 SELENOW 19 47780749 EHD2 19 47716558 3 34 SOMATIC GRCh37 SELENOW-EHD2
+TCGA-CV-6953-01 ROCK1 18 21110818 B4GALT6 18 31666372 frameshift 5 18 SOMATIC GRCh37 ROCK1-B4GALT6
+TCGA-CV-6953-01 IKBKG X 154547745 GAB3 X 154716329 3 21 SOMATIC GRCh37 IKBKG-GAB3
+TCGA-CV-6953-01 TRAPPC9 8 140405577 PTK2 8 140686694 in-frame 3 19 SOMATIC GRCh37 TRAPPC9-PTK2
+TCGA-CV-6953-01 ASCC1 10 72196811 MICU1 10 72408037 in-frame 2 3 SOMATIC GRCh37 ASCC1-MICU1
+TCGA-CV-6953-01 PARD3 10 34331117 HTRA1 10 122488902 in-frame 1 6 SOMATIC GRCh37 PARD3-HTRA1
+TCGA-CV-6953-01 SPRR2E 1 153093553 SPRR2G 1 153150031 in-frame 1000 1000 SOMATIC GRCh37 SPRR2E-SPRR2G
+TCGA-CV-6954-01 FHOD3 18 36372744 MOCOS 18 36256968 in-frame 2 14 SOMATIC GRCh37 FHOD3-MOCOS
+TCGA-CV-6956-01 FSCN1 7 5605384 FBXL18 7 5438651 6 21 SOMATIC GRCh37 FSCN1-FBXL18
+TCGA-CV-6959-01 TPX2 20 31778984 RALY 20 34072066 19 81 SOMATIC GRCh37 TPX2-RALY
+TCGA-CV-6961-01 TMED10 14 75176355 TTLL5 14 75820007 in-frame 42 164 SOMATIC GRCh37 TMED10-TTLL5
+TCGA-CV-6961-01 CUX1 7 102070417 THSD7A 7 11636961 in-frame 1 26 SOMATIC GRCh37 CUX1-THSD7A
+TCGA-CV-6961-01 TTLL5 14 75793100 TMED10 14 75152143 in-frame 3 10 SOMATIC GRCh37 TTLL5-TMED10
+TCGA-CV-6961-01 PCNT 21 46391376 POC1A 3 52075985 frameshift 1 3 SOMATIC GRCh37 PCNT-POC1A
+TCGA-CV-6961-01 EED 11 86250449 HIKESHI 11 86306246 1000 1000 SOMATIC GRCh37 EED-HIKESHI
+TCGA-CV-6962-01 C6orf48 6 31837435 TRIM40 6 30136412 3 5 SOMATIC GRCh37 C6orf48-TRIM40
+TCGA-CV-7090-01 DHX15 4 24548855 RBPJ 4 26386353 frameshift 6 21 SOMATIC GRCh37 DHX15-RBPJ
+TCGA-CV-7090-01 NRP2 2 205683363 PARD3B 2 205553324 frameshift 5 14 SOMATIC GRCh37 NRP2-PARD3B
+TCGA-CV-7091-01 XPR1 1 180836716 TOR3A 1 179097828 in-frame 25 111 SOMATIC GRCh37 XPR1-TOR3A
+TCGA-CV-7097-01 MCTP1 5 94923962 TNC 9 115021267 in-frame 9 18 SOMATIC GRCh37 MCTP1-TNC
+TCGA-CV-7097-01 HELZ2 20 63572108 FNDC11 20 63555654 3 9 SOMATIC GRCh37 HELZ2-FNDC11
+TCGA-CV-7099-01 LINC-PINT 7 131052425 GNGT1 7 93886506 5 3 SOMATIC GRCh37 LINC-PINT-GNGT1
+TCGA-CV-7099-01 DLST 14 74889349 AHSA1 14 77464598 in-frame 1 1 SOMATIC GRCh37 DLST-AHSA1
+TCGA-CV-7100-01 FGFR3 4 1806934 TACC3 4 1739702 in-frame 567 2161 SOMATIC GRCh37 FGFR3-TACC3
+TCGA-CV-7100-01 LDLR 19 11089615 HSH2D 19 16152552 frameshift 89 347 SOMATIC GRCh37 LDLR-HSH2D
+TCGA-CV-7100-01 SART1 11 65967821 CNTN5 11 99819544 frameshift 6 21 SOMATIC GRCh37 SART1-CNTN5
+TCGA-CV-7101-01 RIOK3 18 23453502 TAF4B 18 26389845 in-frame 11 34 SOMATIC GRCh37 RIOK3-TAF4B
+TCGA-CV-7101-01 GGCT 7 30498803 ZNRF2 7 30323642 frameshift 2 13 SOMATIC GRCh37 GGCT-ZNRF2
+TCGA-CV-7101-01 TBL1XR1 3 177197121 KIAA1456 8 13006202 1 9 SOMATIC GRCh37 TBL1XR1-KIAA1456
+TCGA-CV-7102-01 MGRN1 16 4665151 SNX29 16 12477719 in-frame 4 11 SOMATIC GRCh37 MGRN1-SNX29
+TCGA-CV-7102-01 EFL1 15 82214717 CDADC1 13 49274291 in-frame 3 9 SOMATIC GRCh37 EFL1-CDADC1
+TCGA-CV-7103-01 ACTL6A 3 179570241 ALG3 3 184245812 in-frame 36 129 SOMATIC GRCh37 ACTL6A-ALG3
+TCGA-CV-7103-01 DNAJC19 3 180988023 ADK 10 74525256 in-frame 19 112 SOMATIC GRCh37 DNAJC19-ADK
+TCGA-CV-7103-01 FRMD6 14 51491534 ABHD12B 14 50901829 2 1 SOMATIC GRCh37 FRMD6-ABHD12B
+TCGA-CV-7104-01 LAMA3 18 23777619 SNRPD1 18 21629062 in-frame 34 217 SOMATIC GRCh37 LAMA3-SNRPD1
+TCGA-CV-7104-01 CD72 9 35646403 TLN1 9 35703676 1 34 SOMATIC GRCh37 CD72-TLN1
+TCGA-CV-7104-01 ACTB 7 5529535 COL17A1 10 104041344 frameshift 1 7 SOMATIC GRCh37 ACTB-COL17A1
+TCGA-CV-7177-01 PSMD1 2 231146356 ATP2C1 3 130940630 in-frame 2 33 SOMATIC GRCh37 PSMD1-ATP2C1
+TCGA-CV-7177-01 DIP2C 10 472439 TECTA 11 121125302 frameshift 1 8 SOMATIC GRCh37 DIP2C-TECTA
+TCGA-CV-7235-01 SLC39A6 18 36114097 MAST2 1 46019596 frameshift 20 34 SOMATIC GRCh37 SLC39A6-MAST2
+TCGA-CV-7235-01 MACF1 1 39105717 AKIRIN1 1 38998171 in-frame 18 38 SOMATIC GRCh37 MACF1-AKIRIN1
+TCGA-CV-7235-01 CAP1 1 40061812 KCNQ4 1 40819875 in-frame 19 32 SOMATIC GRCh37 CAP1-KCNQ4
+TCGA-CV-7235-01 ARHGAP42 11 100687832 YAP1 11 102205893 in-frame 5 25 SOMATIC GRCh37 ARHGAP42-YAP1
+TCGA-CV-7235-01 ZNF385B 2 179861101 FKBP7 2 178465931 4 26 SOMATIC GRCh37 ZNF385B-FKBP7
+TCGA-CV-7235-01 MAST2 1 46023980 CARD16 11 105044658 in-frame 1 4 SOMATIC GRCh37 MAST2-CARD16
+TCGA-CV-7236-01 RNF216 7 5725324 MTHFD1L 6 151009819 in-frame 20 63 SOMATIC GRCh37 RNF216-MTHFD1L
+TCGA-CV-7236-01 MTHFD1L 6 150972058 RNF216 7 5721172 in-frame 2 12 SOMATIC GRCh37 MTHFD1L-RNF216
+TCGA-CV-7238-01 ZC3H3 8 143536257 TOP1MT 8 143331339 frameshift 5 30 SOMATIC GRCh37 ZC3H3-TOP1MT
+TCGA-CV-7238-01 GLIPR2 9 36150949 GALT 9 34646677 2 4 SOMATIC GRCh37 GLIPR2-GALT
+TCGA-CV-7238-01 KLHL5 4 39045096 SLC16A2 X 74520990 2 3 SOMATIC GRCh37 KLHL5-SLC16A2
+TCGA-CV-7242-01 PER3 1 7794008 CAMTA1 1 7732448 frameshift 1 3 SOMATIC GRCh37 PER3-CAMTA1
+TCGA-CV-7245-01 HNRNPUL1 19 41281275 BCKDHA 19 41410637 in-frame 11 194 SOMATIC GRCh37 HNRNPUL1-BCKDHA
+TCGA-CV-7247-01 SRRM2 16 2760499 PRSS33 16 2786604 6 48 SOMATIC GRCh37 SRRM2-PRSS33
+TCGA-CV-7247-01 PANX1 11 94129493 HEPHL1 11 94093501 frameshift 2 15 SOMATIC GRCh37 PANX1-HEPHL1
+TCGA-CV-7247-01 INIP 9 112716461 C9orf84 9 111786035 frameshift 3 4 SOMATIC GRCh37 INIP-C9orf84
+TCGA-CV-7248-01 CENPC 4 67518156 STAP1 4 67558752 14 98 SOMATIC GRCh37 CENPC-STAP1
+TCGA-CV-7248-01 DST 6 56503997 FBLN5 14 91937201 frameshift 20 51 SOMATIC GRCh37 DST-FBLN5
+TCGA-CV-7248-01 MPP6 7 24623784 OSBPL3 7 24863599 frameshift 6 23 SOMATIC GRCh37 MPP6-OSBPL3
+TCGA-CV-7248-01 SACS 13 23358335 PHF3 6 63778066 in-frame 2 6 SOMATIC GRCh37 SACS-PHF3
+TCGA-CV-7253-01 DHCR24 1 54854037 PCNX2 1 233179175 in-frame 105 338 SOMATIC GRCh37 DHCR24-PCNX2
+TCGA-CV-7253-01 PXN 12 120221623 MSI1 12 120343105 43 192 SOMATIC GRCh37 PXN-MSI1
+TCGA-CV-7253-01 NOL9 1 6554107 DNAJC11 1 6681037 in-frame 7 30 SOMATIC GRCh37 NOL9-DNAJC11
+TCGA-CV-7253-01 GRHL2 8 101492789 TRIM13 13 49997667 5 24 SOMATIC GRCh37 GRHL2-TRIM13
+TCGA-CV-7253-01 RITA1 12 113187048 GRHL2 8 101543241 in-frame 4 11 SOMATIC GRCh37 RITA1-GRHL2
+TCGA-CV-7253-01 PCNX2 1 233198939 TP73 1 3682333 2 3 SOMATIC GRCh37 PCNX2-TP73
+TCGA-CV-7253-01 CSNK1G1 15 64300319 INTS2 17 61869988 frameshift 1 5 SOMATIC GRCh37 CSNK1G1-INTS2
+TCGA-CV-7253-01 GRHL2 8 101492789 KCNRG 13 50020214 in-frame 1 2 SOMATIC GRCh37 GRHL2-KCNRG
+TCGA-CV-7254-01 RAB3D 19 11337172 DMBT1 10 122635991 frameshift 1 9 SOMATIC GRCh37 RAB3D-DMBT1
+TCGA-CV-7254-01 LAMA3 18 23810503 ADHFE1 8 66460308 in-frame 1 5 SOMATIC GRCh37 LAMA3-ADHFE1
+TCGA-CV-7255-01 HIRA 22 19431440 BCL2L13 22 17726677 in-frame 16 29 SOMATIC GRCh37 HIRA-BCL2L13
+TCGA-CV-7255-01 AAK1 2 69556860 GALNT14 2 31147110 2 9 SOMATIC GRCh37 AAK1-GALNT14
+TCGA-CV-7255-01 CELSR2 1 109273892 SORT1 1 109312131 1000 1000 SOMATIC GRCh37 CELSR2-SORT1
+TCGA-CV-7261-01 GOLIM4 3 168024526 SLC40A1 2 189575320 in-frame 18 58 SOMATIC GRCh37 GOLIM4-SLC40A1
+TCGA-CV-7261-01 ARHGEF2 1 155978365 UBQLN4 1 156051857 in-frame 1 5 SOMATIC GRCh37 ARHGEF2-UBQLN4
+TCGA-CV-7261-01 PCCA 13 100157340 FSIP2 2 185828156 frameshift 1 5 SOMATIC GRCh37 PCCA-FSIP2
+TCGA-CV-7261-01 SHROOM3 4 76586469 COL8A1 3 99744897 1 2 SOMATIC GRCh37 SHROOM3-COL8A1
+TCGA-CV-7263-01 C1orf21 1 184477603 LAMC1 1 183116577 frameshift 3 4 SOMATIC GRCh37 C1orf21-LAMC1
+TCGA-CV-7406-01 FBXO28 1 224114396 LYZL2 10 30612900 frameshift 13 50 SOMATIC GRCh37 FBXO28-LYZL2
+TCGA-CV-7406-01 PDE5A 4 119596523 C4orf3 4 119298779 frameshift 2 27 SOMATIC GRCh37 PDE5A-C4orf3
+TCGA-CV-7407-01 PTPRD 9 8733780 IDO1 8 39913889 11 68 SOMATIC GRCh37 PTPRD-IDO1
+TCGA-CV-7407-01 TSHZ3 19 31349180 IFNL1 19 39296805 frameshift 7 10 SOMATIC GRCh37 TSHZ3-IFNL1
+TCGA-CV-7407-01 HACL1 3 15571668 METTL6 3 15384187 frameshift 2 22 SOMATIC GRCh37 HACL1-METTL6
+TCGA-CV-7407-01 PPP1R21 2 48511468 GTF2A1L 2 48669722 in-frame 4 5 SOMATIC GRCh37 PPP1R21-GTF2A1L
+TCGA-CV-7407-01 FNBP1 9 129957360 MFSD14CP 9 96918826 1 12 SOMATIC GRCh37 FNBP1-MFSD14CP
+TCGA-CV-7407-01 CALD1 7 134843971 AKR1B15 7 134564598 1 7 SOMATIC GRCh37 CALD1-AKR1B15
+TCGA-CV-7407-01 CDC42BPA 1 227080893 PRKG1 10 51153164 in-frame 1 6 SOMATIC GRCh37 CDC42BPA-PRKG1
+TCGA-CV-7409-01 TRAK2 2 201420417 KCTD18 2 200507091 7 57 SOMATIC GRCh37 TRAK2-KCTD18
+TCGA-CV-7410-01 LPP 3 188225527 CLSTN2 3 140532324 6 30 SOMATIC GRCh37 LPP-CLSTN2
+TCGA-CV-7410-01 APP 21 26089943 TMEM50B 21 33468926 1 33 SOMATIC GRCh37 APP-TMEM50B
+TCGA-CV-7413-01 KPNA4 3 160565214 IFT80 3 160384646 7 21 SOMATIC GRCh37 KPNA4-IFT80
+TCGA-CV-7413-01 SUPT7L 2 27660984 RBKS 2 27781788 frameshift 4 9 SOMATIC GRCh37 SUPT7L-RBKS
+TCGA-CV-7414-01 PIK3R3 1 46131847 ZSWIM5 1 45088237 in-frame 2 15 SOMATIC GRCh37 PIK3R3-ZSWIM5
+TCGA-CV-7414-01 ITGA2 5 52989532 NDUFS4 5 53646233 in-frame 1 4 SOMATIC GRCh37 ITGA2-NDUFS4
+TCGA-CV-7414-01 BICD2 9 92715253 ASPN 9 92466571 in-frame 1 3 SOMATIC GRCh37 BICD2-ASPN
+TCGA-CV-7415-01 GLTSCR1 19 47673762 ZNF793 19 37548362 8 15 SOMATIC GRCh37 GLTSCR1-ZNF793
+TCGA-CV-7415-01 SMARCA2 9 2088613 DMRT1 9 916763 in-frame 4 28 SOMATIC GRCh37 SMARCA2-DMRT1
+TCGA-CV-7415-01 GTF2IRD1 7 74454176 HSPB1 7 76303802 2 1 SOMATIC GRCh37 GTF2IRD1-HSPB1
+TCGA-CV-7416-01 TUBGCP3 13 112565111 TFDP1 13 113610996 in-frame 5 151 SOMATIC GRCh37 TUBGCP3-TFDP1
+TCGA-CV-7416-01 CHST11 12 104457514 HCFC2 12 104066167 in-frame 2 4 SOMATIC GRCh37 CHST11-HCFC2
+TCGA-CV-7416-01 RSPH3 6 158999712 MIF4GD 17 75268192 in-frame 1000 1000 SOMATIC GRCh37 RSPH3-MIF4GD
+TCGA-CV-7418-01 LRP5 11 68312805 CLPB 11 72359008 in-frame 6 29 SOMATIC GRCh37 LRP5-CLPB
+TCGA-CV-7418-01 NIPBL 5 36958231 SPEF2 5 35753624 frameshift 6 15 SOMATIC GRCh37 NIPBL-SPEF2
+TCGA-CV-7418-01 FOXK2 17 82582934 FN3KRP 17 82726480 frameshift 4 19 SOMATIC GRCh37 FOXK2-FN3KRP
+TCGA-CV-7418-01 PMS1 2 189873656 HIBCH 2 190246212 in-frame 2 4 SOMATIC GRCh37 PMS1-HIBCH
+TCGA-CV-7421-01 EWSR1 22 29273864 ABR 17 1125367 in-frame 14 48 SOMATIC GRCh37 EWSR1-ABR
+TCGA-CV-7421-01 VPS41 7 38789801 AES 19 3054194 frameshift 10 37 SOMATIC GRCh37 VPS41-AES
+TCGA-CV-7421-01 PLAT 8 42207494 EFCAB8 20 32943636 5 15 SOMATIC GRCh37 PLAT-EFCAB8
+TCGA-CV-7421-01 BCR 22 23182239 TOM1 22 35327271 frameshift 3 12 SOMATIC GRCh37 BCR-TOM1
+TCGA-CV-7421-01 PLA2G6 22 38142050 SCARF2 22 20426020 4 7 SOMATIC GRCh37 PLA2G6-SCARF2
+TCGA-CV-7421-01 TPX2 20 31760179 DUSP15 20 31850676 frameshift 2 14 SOMATIC GRCh37 TPX2-DUSP15
+TCGA-CV-7422-01 TRABD 22 50185976 DDR2 1 162655211 5 17 SOMATIC GRCh37 TRABD-DDR2
+TCGA-CV-7422-01 ARFIP1 4 152780226 DCTD 4 182915575 2 1 SOMATIC GRCh37 ARFIP1-DCTD
+TCGA-CV-7422-01 ANKRD42 11 83198642 PICALM 11 85959060 in-frame 1 1 SOMATIC GRCh37 ANKRD42-PICALM
+TCGA-CV-7424-01 DTNB 2 25451548 CNOT4 7 135422353 in-frame 6 16 SOMATIC GRCh37 DTNB-CNOT4
+TCGA-CV-7424-01 AP2A2 11 926088 TRIM22 11 5697248 frameshift 4 7 SOMATIC GRCh37 AP2A2-TRIM22
+TCGA-CV-7424-01 PPIL2 22 21683257 KIAA1671 22 25181699 in-frame 1 3 SOMATIC GRCh37 PPIL2-KIAA1671
+TCGA-CV-7424-01 ANKIB1 7 92392292 GNAI1 7 80199225 in-frame 1 1 SOMATIC GRCh37 ANKIB1-GNAI1
+TCGA-CV-7428-01 NFIX 19 13025552 RALGPS1 9 127166069 in-frame 7 26 SOMATIC GRCh37 NFIX-RALGPS1
+TCGA-CV-7428-01 TMEM51 1 15153954 KAZN 1 15043989 7 15 SOMATIC GRCh37 TMEM51-KAZN
+TCGA-CV-7428-01 SMU1 9 33068824 B4GALT1 9 33104781 in-frame 3 6 SOMATIC GRCh37 SMU1-B4GALT1
+TCGA-CV-7429-01 GNA13 17 65053502 BMI1 10 22328134 frameshift 9 51 SOMATIC GRCh37 GNA13-BMI1
+TCGA-CV-7430-01 ELP3 8 28158633 MYO5C 15 52208643 in-frame 9 33 SOMATIC GRCh37 ELP3-MYO5C
+TCGA-CV-7430-01 IRAK2 3 10165048 SRGAP3 3 9124917 in-frame 8 36 SOMATIC GRCh37 IRAK2-SRGAP3
+TCGA-CV-7430-01 PDLIM1 10 95263864 SORBS1 10 95322021 frameshift 2 6 SOMATIC GRCh37 PDLIM1-SORBS1
+TCGA-CV-7433-01 LAMB3 1 209622536 NAMPT 7 106254504 frameshift 3 11 SOMATIC GRCh37 LAMB3-NAMPT
+TCGA-CV-7433-01 MFF 2 227328789 COL4A3 2 227282365 4 6 SOMATIC GRCh37 MFF-COL4A3
+TCGA-CV-7434-01 PQLC1 18 79943329 HSBP1L1 18 79966612 frameshift 28 210 SOMATIC GRCh37 PQLC1-HSBP1L1
+TCGA-CV-7434-01 OPA1 3 193593409 ATP13A4 3 193459231 in-frame 8 24 SOMATIC GRCh37 OPA1-ATP13A4
+TCGA-CV-7435-01 NEDD4L 18 58165861 UBE2G1 17 4307123 frameshift 8 68 SOMATIC GRCh37 NEDD4L-UBE2G1
+TCGA-CV-7437-01 DPY19L1 7 35010468 SDK1 7 3821450 in-frame 3 21 SOMATIC GRCh37 DPY19L1-SDK1
+TCGA-CV-7438-01 PPP1R12A 12 79934695 TPGS2 18 36818973 frameshift 1 2 SOMATIC GRCh37 PPP1R12A-TPGS2
+TCGA-CV-7440-01 KMT2C 7 152205106 GTF2IRD1 7 74589851 in-frame 29 35 SOMATIC GRCh37 KMT2C-GTF2IRD1
+TCGA-CV-7446-01 ARG2 14 67651346 IPPK 9 92652639 4 12 SOMATIC GRCh37 ARG2-IPPK
+TCGA-CV-7446-01 NCOA2 8 70403700 EIF3E 8 108203503 1 1 SOMATIC GRCh37 NCOA2-EIF3E
+TCGA-CV-7446-01 IPPK 9 92656456 VTI1B 14 67651481 in-frame 1000 1000 SOMATIC GRCh37 IPPK-VTI1B
+TCGA-CV-7568-01 PGAP1 2 196870941 ZDBF2 2 206304717 frameshift 9 66 SOMATIC GRCh37 PGAP1-ZDBF2
+TCGA-CV-A45P-01 EXOC2 6 488979 FRMD4B 3 69336586 1 28 SOMATIC GRCh37 EXOC2-FRMD4B
+TCGA-CV-A45R-01 REV1 2 99489817 TMEM131 2 97776018 2 7 SOMATIC GRCh37 REV1-TMEM131
+TCGA-CV-A45T-01 SEC23B 20 18525932 ZCCHC7 9 37349357 in-frame 8 26 SOMATIC GRCh37 SEC23B-ZCCHC7
+TCGA-CV-A45T-01 DENND1A 9 123557570 ENG 9 127818832 in-frame 2 8 SOMATIC GRCh37 DENND1A-ENG
+TCGA-CV-A45T-01 ZCCHC7 9 37327834 SEC23B 20 18542296 in-frame 1 6 SOMATIC GRCh37 ZCCHC7-SEC23B
+TCGA-CV-A45U-01 C11orf68 11 65919042 DRAP1 11 65920019 21 32 SOMATIC GRCh37 C11orf68-DRAP1
+TCGA-CV-A45W-01 C14orf2 14 103921470 BRF1 14 105252579 14 33 SOMATIC GRCh37 C14orf2-BRF1
+TCGA-CV-A45X-01 VPS53 17 697418 ABR 17 1100735 in-frame 6 21 SOMATIC GRCh37 VPS53-ABR
+TCGA-CV-A45X-01 PPFIA1 11 70272436 RBM4 11 66639700 6 20 SOMATIC GRCh37 PPFIA1-RBM4
+TCGA-CV-A45X-01 KREMEN1 22 29073227 MAPK1 22 21769320 frameshift 2 4 SOMATIC GRCh37 KREMEN1-MAPK1
+TCGA-CV-A45X-01 ADAM9 8 39091346 ERCC8 5 60928959 frameshift 1 2 SOMATIC GRCh37 ADAM9-ERCC8
+TCGA-CV-A45Y-01 CAPS2 12 75371079 KCNC2 12 75051317 2 4 SOMATIC GRCh37 CAPS2-KCNC2
+TCGA-CV-A461-01 MOB3A 19 2078140 DAND5 19 12973389 frameshift 6 13 SOMATIC GRCh37 MOB3A-DAND5
+TCGA-CV-A464-01 ZNF462 9 106984409 RAD23B 9 107306379 in-frame 2 15 SOMATIC GRCh37 ZNF462-RAD23B
+TCGA-CV-A465-01 ZNF267 16 31885256 GPR180 13 94621078 in-frame 5 36 SOMATIC GRCh37 ZNF267-GPR180
+TCGA-CV-A465-01 MRPL30 2 99181249 FAM178B 2 96960440 8 2 SOMATIC GRCh37 MRPL30-FAM178B
+TCGA-CV-A6JD-01 YWHAZ 8 100951929 UBA1 X 47198803 2 1 SOMATIC GRCh37 YWHAZ-UBA1
+TCGA-CV-A6JE-01 HELZ 17 67151046 PSMD12 17 67341052 frameshift 8 69 SOMATIC GRCh37 HELZ-PSMD12
+TCGA-CV-A6JN-01 CTTN 11 70422995 FHIT 3 60014075 in-frame 2 36 SOMATIC GRCh37 CTTN-FHIT
+TCGA-CV-A6JU-01 IGSF3 1 116666284 C1orf137 1 116694759 15 48 SOMATIC GRCh37 IGSF3-C1orf137
+TCGA-CX-7085-01 SPRR2G 1 153150014 SPRR2D 1 153040291 in-frame 1000 1000 SOMATIC GRCh37 SPRR2G-SPRR2D
+TCGA-CX-7086-01 TBC1D10A 22 30299444 POLR3H 22 41540795 in-frame 8 20 SOMATIC GRCh37 TBC1D10A-POLR3H
+TCGA-CX-7086-01 CBX7 22 39149789 VPREB1 22 22244946 frameshift 4 14 SOMATIC GRCh37 CBX7-VPREB1
+TCGA-CX-7086-01 BCR 22 23182239 UPB1 22 24500107 frameshift 1 14 SOMATIC GRCh37 BCR-UPB1
+TCGA-CX-7086-01 OSBP2 22 30870682 NF2 22 29642202 in-frame 1 12 SOMATIC GRCh37 OSBP2-NF2
+TCGA-CX-7086-01 CRCT1 1 152516010 SPRR2A 1 153056653 1000 1000 SOMATIC GRCh37 CRCT1-SPRR2A
+TCGA-CX-7219-01 EMP2 16 10532204 SORL1 11 121590488 24 0 SOMATIC GRCh37 EMP2-SORL1
+TCGA-D6-6515-01 NDUFA7 19 8316496 PRKCG 19 53903073 frameshift 22 78 SOMATIC GRCh37 NDUFA7-PRKCG
+TCGA-D6-6517-01 IFT20 17 28335340 VTN 17 28370270 12 123 SOMATIC GRCh37 IFT20-VTN
+TCGA-D6-6517-01 DST 6 56458370 HMGN1 21 39349057 6 8 SOMATIC GRCh37 DST-HMGN1
+TCGA-D6-6517-01 F3 1 94541537 C11orf80 11 66816053 in-frame 2 2 SOMATIC GRCh37 F3-C11orf80
+TCGA-D6-6825-01 LAMB3 1 209622536 NAB1 2 190673101 frameshift 15 19 SOMATIC GRCh37 LAMB3-NAB1
+TCGA-D6-6825-01 USP16 21 29030773 CNBD2 20 35972629 in-frame 4 27 SOMATIC GRCh37 USP16-CNBD2
+TCGA-D6-6826-01 VGLL4 3 11601833 CHL1 3 377818 in-frame 11 102 SOMATIC GRCh37 VGLL4-CHL1
+TCGA-D6-6826-01 RNF130 5 180013061 TBC1D9B 5 179904812 frameshift 1 5 SOMATIC GRCh37 RNF130-TBC1D9B
+TCGA-D6-6826-01 SDK2 17 73365258 CDC42EP4 17 73286612 1000 1000 SOMATIC GRCh37 SDK2-CDC42EP4
+TCGA-D6-6827-01 RB1 13 48307406 HTR2C X 114906589 frameshift 5 28 SOMATIC GRCh37 RB1-HTR2C
+TCGA-D6-6827-01 USPL1 13 30618056 RB1 13 48342599 4 5 SOMATIC GRCh37 USPL1-RB1
+TCGA-D6-8568-01 NLRC5 16 57017188 CYB5B 16 69459093 15 62 SOMATIC GRCh37 NLRC5-CYB5B
+TCGA-D6-8568-01 OTUB1 11 64001520 GBA1 1 155238650 frameshift 1 2 SOMATIC GRCh37 OTUB1-GBA1
+TCGA-D6-8569-01 COL5A1 9 134772834 SPATA31D3 9 81946468 frameshift 9 22 SOMATIC GRCh37 COL5A1-SPATA31D3
+TCGA-D6-8569-01 CAMSAP1 9 135907000 SDCCAG3 9 136407938 in-frame 2 23 SOMATIC GRCh37 CAMSAP1-SDCCAG3
+TCGA-D6-8569-01 RXRA 9 134421805 PRRC2B 9 131430090 2 9 SOMATIC GRCh37 RXRA-PRRC2B
+TCGA-D6-A4Z9-01 DYRK1A 21 37367628 IFNGR2 21 33421480 10 15 SOMATIC GRCh37 DYRK1A-IFNGR2
+TCGA-D6-A4Z9-01 DIP2A 21 46509376 NRIP1 21 14968526 3 12 SOMATIC GRCh37 DIP2A-NRIP1
+TCGA-D6-A4ZB-01 PRMT2 21 46649739 WRB 21 39390698 in-frame 3 8 SOMATIC GRCh37 PRMT2-WRB
+TCGA-D6-A4ZB-01 C1S 12 7063067 PTPRO 12 15410280 2 5 SOMATIC GRCh37 C1S-PTPRO
+TCGA-D6-A4ZB-01 SCAPER 15 76404524 TMEM266 15 76134168 2 5 SOMATIC GRCh37 SCAPER-TMEM266
+TCGA-D6-A6EM-01 ITGB5 3 124901266 FGL1 8 17885571 1 6 SOMATIC GRCh37 ITGB5-FGL1
+TCGA-D6-A6EN-01 MINK1 17 4833640 ALOX12 17 7000336 in-frame 6 25 SOMATIC GRCh37 MINK1-ALOX12
+TCGA-D6-A6EO-01 FAM160A1 4 151409465 HPF1 4 169753835 6 32 SOMATIC GRCh37 FAM160A1-HPF1
+TCGA-D6-A6ES-01 PSMC6 14 52711524 KANSL2 12 48655060 in-frame 3 1 SOMATIC GRCh37 PSMC6-KANSL2
+TCGA-D6-A74Q-01 STIP1 11 64186270 UBE2G1 17 4307123 frameshift 16 45 SOMATIC GRCh37 STIP1-UBE2G1
+TCGA-D6-A74Q-01 ANKRD12 18 9137873 RIOK3 18 23462964 1 3 SOMATIC GRCh37 ANKRD12-RIOK3
+TCGA-DQ-5624-01 ERP44 9 100052417 CHRDL2 11 74718832 in-frame 53 246 SOMATIC GRCh37 ERP44-CHRDL2
+TCGA-DQ-5624-01 SLC2A11 22 23875241 LLPH 12 66124018 in-frame 15 99 SOMATIC GRCh37 SLC2A11-LLPH
+TCGA-DQ-5624-01 ALG10B 12 38318458 IGFBP6 12 53102045 in-frame 10 36 SOMATIC GRCh37 ALG10B-IGFBP6
+TCGA-DQ-5624-01 ALG10 12 34024159 IGFBP6 12 53102045 in-frame 1000 1000 SOMATIC GRCh37 ALG10-IGFBP6
+TCGA-DQ-5629-01 TMEM11 17 21214091 UBAP1 9 34220908 frameshift 2 27 SOMATIC GRCh37 TMEM11-UBAP1
+TCGA-DQ-5629-01 PPP1R37 19 45093527 ZNF225 19 44115760 2 6 SOMATIC GRCh37 PPP1R37-ZNF225
+TCGA-DQ-5630-01 DCLRE1C 10 14949036 OR7E26P 10 15000006 8 32 SOMATIC GRCh37 DCLRE1C-OR7E26P
+TCGA-DQ-5630-01 SWAP70 11 9694286 WEE1 11 9581532 frameshift 2 10 SOMATIC GRCh37 SWAP70-WEE1
+TCGA-DQ-5630-01 STN1 10 103882645 SH3PXD2A 10 103801362 1000 1000 SOMATIC GRCh37 STN1-SH3PXD2A
+TCGA-DQ-5631-01 VSTM2L 20 37933589 RPRD1B 20 38089726 in-frame 4 24 SOMATIC GRCh37 VSTM2L-RPRD1B
+TCGA-DQ-7588-01 FAT1 4 186633684 CFAP97 4 185164179 in-frame 15 653 SOMATIC GRCh37 FAT1-CFAP97
+TCGA-DQ-7589-01 MED24 17 40026156 PPP1R1B 17 39635607 frameshift 9 163 SOMATIC GRCh37 MED24-PPP1R1B
+TCGA-DQ-7589-01 DHX8 17 43484185 KRTAP4-1 17 41185321 4 40 SOMATIC GRCh37 DHX8-KRTAP4-1
+TCGA-DQ-7589-01 CCND1 11 69643991 FGF4 11 69774127 in-frame 4 11 SOMATIC GRCh37 CCND1-FGF4
+TCGA-DQ-7589-01 HAUS6 9 19094317 PMPCA 9 136412490 frameshift 5 7 SOMATIC GRCh37 HAUS6-PMPCA
+TCGA-DQ-7589-01 ZDHHC21 9 14690337 ELAVL2 9 23731125 2 16 SOMATIC GRCh37 ZDHHC21-ELAVL2
+TCGA-DQ-7589-01 CDK14 7 90604249 ORC5 7 104204234 in-frame 2 14 SOMATIC GRCh37 CDK14-ORC5
+TCGA-DQ-7589-01 ATXN1 6 16522627 ZNF788 19 12135775 4 5 SOMATIC GRCh37 ATXN1-ZNF788
+TCGA-DQ-7589-01 HACD3 15 65530718 RAB11A 15 65850864 3 4 SOMATIC GRCh37 HACD3-RAB11A
+TCGA-DQ-7589-01 SNX30 9 112751157 CNTLN 9 17484295 in-frame 1 12 SOMATIC GRCh37 SNX30-CNTLN
+TCGA-DQ-7589-01 PARG 10 49908455 FAM21EP 10 50021467 1 9 SOMATIC GRCh37 PARG-FAM21EP
+TCGA-DQ-7589-01 TAF1A 1 222584128 SLC12A7 5 1085473 in-frame 1 3 SOMATIC GRCh37 TAF1A-SLC12A7
+TCGA-DQ-7589-01 BCAS3 17 61078529 TLK2 17 62596585 in-frame 1 2 SOMATIC GRCh37 BCAS3-TLK2
+TCGA-DQ-7590-01 PITX1 5 135033713 P4HA2 5 132218644 frameshift 10 27 SOMATIC GRCh37 PITX1-P4HA2
+TCGA-DQ-7590-01 MKRN1 7 140459007 BRAF 7 140781693 in-frame 1 3 SOMATIC GRCh37 MKRN1-BRAF
+TCGA-DQ-7591-01 KPNA6 1 32108134 RHCE 1 25370540 in-frame 54 74 SOMATIC GRCh37 KPNA6-RHCE
+TCGA-DQ-7591-01 WDTC1 1 27234951 TMEM39B 1 32074951 6 52 SOMATIC GRCh37 WDTC1-TMEM39B
+TCGA-DQ-7591-01 MAD1L1 7 2149152 SERGEF 11 17788413 frameshift 9 23 SOMATIC GRCh37 MAD1L1-SERGEF
+TCGA-DQ-7591-01 PARD6G 18 80202710 CHST1 11 45652606 2 22 SOMATIC GRCh37 PARD6G-CHST1
+TCGA-DQ-7591-01 KIF3B 20 32316874 NINL 20 25526598 4 7 SOMATIC GRCh37 KIF3B-NINL
+TCGA-DQ-7591-01 CS 12 56291631 MUCL1 12 54858193 3 6 SOMATIC GRCh37 CS-MUCL1
+TCGA-DQ-7591-01 GINS1 20 25407895 DEFB123 20 31450029 frameshift 1 14 SOMATIC GRCh37 GINS1-DEFB123
+TCGA-DQ-7591-01 DNAJC8 1 28232921 KDF1 1 26952412 1 8 SOMATIC GRCh37 DNAJC8-KDF1
+TCGA-DQ-7591-01 NAV1 1 201649425 HN1L 16 1691843 in-frame 1 7 SOMATIC GRCh37 NAV1-HN1L
+TCGA-DQ-7591-01 PHB2 12 6970196 RBP5 12 7124730 frameshift 2 3 SOMATIC GRCh37 PHB2-RBP5
+TCGA-DQ-7591-01 TASP1 20 13528446 AHCY 20 34295585 frameshift 1 7 SOMATIC GRCh37 TASP1-AHCY
+TCGA-DQ-7591-01 SNRNP40 1 31289254 EPB41 1 29039254 frameshift 1 3 SOMATIC GRCh37 SNRNP40-EPB41
+TCGA-DQ-7592-01 DHTKD1 10 12069187 CDC123 10 12230948 in-frame 13 65 SOMATIC GRCh37 DHTKD1-CDC123
+TCGA-DQ-7592-01 FRS2 12 69470530 LEMD3 12 65210926 2 25 SOMATIC GRCh37 FRS2-LEMD3
+TCGA-DQ-7592-01 SMO 7 129209397 STRIP2 7 129464612 in-frame 1 2 SOMATIC GRCh37 SMO-STRIP2
+TCGA-DQ-7593-01 WDR11 10 120905416 PDLIM1 10 95271784 in-frame 4 22 SOMATIC GRCh37 WDR11-PDLIM1
+TCGA-DQ-7594-01 ACACA 17 37406262 CCDC192 5 127797103 frameshift 11 45 SOMATIC GRCh37 ACACA-CCDC192
+TCGA-DQ-7594-01 NFE2L2 2 177264532 RFTN2 2 197572280 in-frame 8 39 SOMATIC GRCh37 NFE2L2-RFTN2
+TCGA-DQ-7594-01 AGPS 2 177513908 MOB4 2 197540111 in-frame 4 4 SOMATIC GRCh37 AGPS-MOB4
+TCGA-DQ-7594-01 METTL8 2 171392043 RFTN2 2 197572280 frameshift 1 13 SOMATIC GRCh37 METTL8-RFTN2
+TCGA-F7-7848-01 MRPL21 11 68892890 SHANK2 11 70473439 in-frame 43 166 SOMATIC GRCh37 MRPL21-SHANK2
+TCGA-F7-7848-01 RPS6KB2 11 67429240 PCNX3 11 65617940 frameshift 11 99 SOMATIC GRCh37 RPS6KB2-PCNX3
+TCGA-F7-7848-01 C11orf80 11 66759096 TSGA10IP 11 65945715 frameshift 4 20 SOMATIC GRCh37 C11orf80-TSGA10IP
+TCGA-F7-7848-01 DYNLL1 12 120470104 COQ5 12 120510123 1 7 SOMATIC GRCh37 DYNLL1-COQ5
+TCGA-F7-8298-01 METTL16 17 2473524 DHX8 17 43489449 in-frame 8 7 SOMATIC GRCh37 METTL16-DHX8
+TCGA-F7-8298-01 HELZ 17 67239433 WIPF2 17 40256391 2 21 SOMATIC GRCh37 HELZ-WIPF2
+TCGA-F7-8489-01 CASP1 11 105033064 TTC6 14 37802094 3 23 SOMATIC GRCh37 CASP1-TTC6
+TCGA-F7-8489-01 ZFHX3 16 72889731 PMFBP1 16 72120089 frameshift 1 2 SOMATIC GRCh37 ZFHX3-PMFBP1
+TCGA-F7-A50G-01 AEBP2 12 19493986 GYS2 12 21546470 frameshift 24 93 SOMATIC GRCh37 AEBP2-GYS2
+TCGA-F7-A50I-01 CLSTN1 1 9773272 PIK3CD-AS2 1 9672719 4 66 SOMATIC GRCh37 CLSTN1-PIK3CD-AS2
+TCGA-F7-A50I-01 CCDC47 17 63760914 USP37 2 218553724 in-frame 1 8 SOMATIC GRCh37 CCDC47-USP37
+TCGA-F7-A50I-01 UTP6 17 31887236 BCAS3 17 61034666 frameshift 2 3 SOMATIC GRCh37 UTP6-BCAS3
+TCGA-F7-A61V-01 KXD1 19 18565021 CRLF1 19 18573007 1 12 SOMATIC GRCh37 KXD1-CRLF1
+TCGA-F7-A61W-01 C10orf76 10 102056085 LDB1 10 102111536 2 13 SOMATIC GRCh37 C10orf76-LDB1
+TCGA-F7-A61W-01 AKR1A1 1 45561878 AGO3 1 36004341 frameshift 3 6 SOMATIC GRCh37 AKR1A1-AGO3
+TCGA-F7-A620-01 F3 1 94541537 C11orf80 11 66816053 in-frame 1 1 SOMATIC GRCh37 F3-C11orf80
+TCGA-F7-A623-01 PPIG 2 169614681 SSB 2 169805474 in-frame 5 27 SOMATIC GRCh37 PPIG-SSB
+TCGA-F7-A623-01 SMAP1 6 70798737 KHDC1 6 73292040 frameshift 5 11 SOMATIC GRCh37 SMAP1-KHDC1
+TCGA-F7-A623-01 FUT10 8 33473064 RNF122 8 33558771 5 8 SOMATIC GRCh37 FUT10-RNF122
+TCGA-F7-A623-01 BECN1 17 42813948 GPATCH8 17 44438715 4 7 SOMATIC GRCh37 BECN1-GPATCH8
+TCGA-F7-A623-01 KIF13B 8 29099133 SLC25A21 14 36875004 in-frame 1 14 SOMATIC GRCh37 KIF13B-SLC25A21
+TCGA-F7-A623-01 TANC2 17 63099357 CEP112 17 65961598 frameshift 2 8 SOMATIC GRCh37 TANC2-CEP112
+TCGA-F7-A623-01 VTI1A 10 112464657 ACSL5 10 112394918 frameshift 1 9 SOMATIC GRCh37 VTI1A-ACSL5
+TCGA-H7-A6C4-01 UBAC2 13 99244624 CLYBL 13 99772824 in-frame 1 18 SOMATIC GRCh37 UBAC2-CLYBL
+TCGA-H7-A6C4-01 WWC2 4 183099622 CCDC110 4 185471049 frameshift 2 7 SOMATIC GRCh37 WWC2-CCDC110
+TCGA-H7-A76A-01 DENND1A 9 123609436 NDUFA8 9 122152408 in-frame 4 17 SOMATIC GRCh37 DENND1A-NDUFA8
+TCGA-HD-7229-01 CHRM3 1 239827378 FMN2 1 240472372 4 16 SOMATIC GRCh37 CHRM3-FMN2
+TCGA-HD-7229-01 PHF21A 11 46076754 MIR670HG 11 43569767 4 6 SOMATIC GRCh37 PHF21A-MIR670HG
+TCGA-HD-7229-01 JAK2 9 5029906 GLDC 9 6565429 in-frame 1 2 SOMATIC GRCh37 JAK2-GLDC
+TCGA-HD-7753-01 NSD2 4 1871542 PIBF1 13 72965274 65 239 SOMATIC GRCh37 NSD2-PIBF1
+TCGA-HD-7753-01 PARD6G 18 80247277 RFTN2 2 197572280 in-frame 17 102 SOMATIC GRCh37 PARD6G-RFTN2
+TCGA-HD-7753-01 LAMC2 1 183231103 WASHC3 12 102046119 in-frame 11 46 SOMATIC GRCh37 LAMC2-WASHC3
+TCGA-HD-7753-01 FILIP1L 3 99876072 IMPG2 3 101269573 8 16 SOMATIC GRCh37 FILIP1L-IMPG2
+TCGA-HD-7753-01 VRK1 14 96860735 SAMD4A 14 54702062 frameshift 1 3 SOMATIC GRCh37 VRK1-SAMD4A
+TCGA-HD-7831-01 IGKV1OR2-6 2 97355327 IGKC 2 88857683 3 49 SOMATIC GRCh37 IGKV1OR2-6-IGKC
+TCGA-HD-7831-01 FAM49B 8 129850835 CCDC26 8 129399684 3 17 SOMATIC GRCh37 FAM49B-CCDC26
+TCGA-HD-7831-01 COL6A2 21 46122158 MYH9 22 36299042 in-frame 1 7 SOMATIC GRCh37 COL6A2-MYH9
+TCGA-HD-7832-01 SEC24A 5 134692657 PCBD2 5 134959040 in-frame 1 3 SOMATIC GRCh37 SEC24A-PCBD2
+TCGA-HD-8224-01 NSD2 4 1901251 PHTF2 7 77893608 in-frame 7 49 SOMATIC GRCh37 NSD2-PHTF2
+TCGA-HD-8224-01 C15orf41 15 36579961 RYR3 15 33722715 frameshift 1 4 SOMATIC GRCh37 C15orf41-RYR3
+TCGA-HD-8314-01 NIPAL3 1 24453504 GRHL3 1 24364185 frameshift 31 64 SOMATIC GRCh37 NIPAL3-GRHL3
+TCGA-HD-8314-01 BPIFB2 20 33020587 MUC5B 11 1260626 frameshift 1 3 SOMATIC GRCh37 BPIFB2-MUC5B
+TCGA-HD-A634-01 GPD2 2 156476207 NR4A2 2 156326000 frameshift 23 161 SOMATIC GRCh37 GPD2-NR4A2
+TCGA-HD-A634-01 NR4A2 2 156330668 GPD2 2 156476098 4 30 SOMATIC GRCh37 NR4A2-GPD2
+TCGA-HD-A6HZ-01 PLPP1 5 55534572 SPEF2 5 35806707 frameshift 8 25 SOMATIC GRCh37 PLPP1-SPEF2
+TCGA-HD-A6HZ-01 ACTR3 2 113955706 SLC4A10 2 161620915 5 15 SOMATIC GRCh37 ACTR3-SLC4A10
+TCGA-HD-A6HZ-01 PTPRF 1 43623403 LRP12 8 104509074 4 10 SOMATIC GRCh37 PTPRF-LRP12
+TCGA-HD-A6HZ-01 GPR161 1 168136257 MPC2 1 167920631 frameshift 1 5 SOMATIC GRCh37 GPR161-MPC2
+TCGA-HD-A6HZ-01 CACNA2D1 7 81982567 CDK14 7 91045897 frameshift 1 2 SOMATIC GRCh37 CACNA2D1-CDK14
+TCGA-HD-A6I0-01 ARHGEF37 5 149581624 MIR205HG 1 209429181 1 1 SOMATIC GRCh37 ARHGEF37-MIR205HG
+TCGA-HL-7533-01 TBL1X X 9501849 GPR143 X 9743673 15 69 SOMATIC GRCh37 TBL1X-GPR143
+TCGA-HL-7533-01 NF1 17 31169997 RNF135 17 30997242 in-frame 7 24 SOMATIC GRCh37 NF1-RNF135
+TCGA-HL-7533-01 IQGAP1 15 90390873 SPPL2A 15 50707874 frameshift 8 7 SOMATIC GRCh37 IQGAP1-SPPL2A
+TCGA-IQ-7630-01 PSAP 10 71851182 ASCC1 10 72213331 1 12 SOMATIC GRCh37 PSAP-ASCC1
+TCGA-IQ-7631-01 LRP5 11 68312805 ZNF317 19 9155925 2 11 SOMATIC GRCh37 LRP5-ZNF317
+TCGA-IQ-7632-01 PWP2 21 44124727 TRAPPC10 21 44074324 in-frame 3 5 SOMATIC GRCh37 PWP2-TRAPPC10
+TCGA-IQ-A61G-01 ASNSD1 2 189661610 PMS1 2 189843964 in-frame 6 32 SOMATIC GRCh37 ASNSD1-PMS1
+TCGA-IQ-A61G-01 EML3 11 62605113 INTS5 11 62649999 in-frame 2 6 SOMATIC GRCh37 EML3-INTS5
+TCGA-IQ-A61H-01 GRHL2 8 101492789 CRMP1 4 5828668 frameshift 74 210 SOMATIC GRCh37 GRHL2-CRMP1
+TCGA-IQ-A61H-01 GRHL2 8 101649499 SPAG1 8 100162279 1 17 SOMATIC GRCh37 GRHL2-SPAG1
+TCGA-IQ-A61H-01 FCHSD2 11 73083695 STARD10 11 72793924 3 5 SOMATIC GRCh37 FCHSD2-STARD10
+TCGA-IQ-A61H-01 ATP6V1C1 8 103042407 VPS13B 8 99556450 in-frame 1 3 SOMATIC GRCh37 ATP6V1C1-VPS13B
+TCGA-IQ-A61I-01 CXCL1 4 73869989 AFP 4 73453765 in-frame 2 14 SOMATIC GRCh37 CXCL1-AFP
+TCGA-IQ-A61I-01 FANCC 9 95135346 ACOT11 1 54584655 in-frame 1 8 SOMATIC GRCh37 FANCC-ACOT11
+TCGA-KU-A66T-01 KDM5C X 53216074 HUWE1 X 53680186 44 200 SOMATIC GRCh37 KDM5C-HUWE1
+TCGA-KU-A66T-01 NSD3 8 38304587 TCEA1 8 53970463 frameshift 22 223 SOMATIC GRCh37 NSD3-TCEA1
+TCGA-KU-A66T-01 MYO1B 2 191245626 NCKAP1 2 182964808 5 17 SOMATIC GRCh37 MYO1B-NCKAP1
+TCGA-KU-A66T-01 CHM X 85873052 KCNIP4 4 20850667 frameshift 1 4 SOMATIC GRCh37 CHM-KCNIP4
+TCGA-KU-A66T-01 FAM171B 2 186694411 ZNF75D X 135252011 1 2 SOMATIC GRCh37 FAM171B-ZNF75D
+TCGA-KU-A6H7-01 CPSF6 12 69262562 COL16A1 1 31652853 frameshift 70 296 SOMATIC GRCh37 CPSF6-COL16A1
+TCGA-KU-A6H7-01 COL16A1 1 31653599 CPSF6 12 69269512 frameshift 20 120 SOMATIC GRCh37 COL16A1-CPSF6
+TCGA-KU-A6H7-01 HSPA8 11 123060593 VSTM5 11 93821323 frameshift 1 28 SOMATIC GRCh37 HSPA8-VSTM5
+TCGA-MT-A51X-01 UNC13B 9 35231219 UBE2R2 9 33886881 frameshift 7 31 SOMATIC GRCh37 UNC13B-UBE2R2
+TCGA-MT-A51X-01 GTF2IRD1 7 74454176 SEM1 7 96637306 4 5 SOMATIC GRCh37 GTF2IRD1-SEM1
+TCGA-MT-A67A-01 CCAR2 8 22608065 PPP3CC 8 22540615 frameshift 2 2 SOMATIC GRCh37 CCAR2-PPP3CC
+TCGA-MT-A67F-01 RBM17 10 6106238 PRKACB 1 84179177 in-frame 9 48 SOMATIC GRCh37 RBM17-PRKACB
+TCGA-MT-A7BN-01 NT5DC1 6 116115770 SEC63 6 107883146 in-frame 5 20 SOMATIC GRCh37 NT5DC1-SEC63
+TCGA-MT-A7BN-01 PREP 6 105281746 PTPRK 6 128322310 frameshift 1 9 SOMATIC GRCh37 PREP-PTPRK
+TCGA-MT-A7BN-01 BPGM 7 134646937 AKR1B15 7 134568158 1 2 SOMATIC GRCh37 BPGM-AKR1B15
+TCGA-MT-A7BN-01 ZNF529 19 36572333 FAM187B 19 35225212 in-frame 1 2 SOMATIC GRCh37 ZNF529-FAM187B
+TCGA-MZ-A5BI-01 ZFPM2 8 105634357 ANXA13 8 123681359 frameshift 28 69 SOMATIC GRCh37 ZFPM2-ANXA13
+TCGA-MZ-A5BI-01 NFE2L3 7 26183784 TPST1 7 66352505 in-frame 3 25 SOMATIC GRCh37 NFE2L3-TPST1
+TCGA-MZ-A5BI-01 UBR5 8 102257632 TRAF3 14 102886189 in-frame 3 5 SOMATIC GRCh37 UBR5-TRAF3
+TCGA-MZ-A5BI-01 SUZ12 17 31988497 LRRC37B 17 32053266 frameshift 1000 1000 SOMATIC GRCh37 SUZ12-LRRC37B
+TCGA-MZ-A6I9-01 HSD17B12 11 43840064 RPS6KB1 17 59910562 in-frame 1 2 SOMATIC GRCh37 HSD17B12-RPS6KB1
+TCGA-MZ-A7D7-01 TOP1 20 41029455 CA10 17 51747818 frameshift 12 11 SOMATIC GRCh37 TOP1-CA10
+TCGA-MZ-A7D7-01 JARID2 6 15452175 HFE 6 26091314 in-frame 1 11 SOMATIC GRCh37 JARID2-HFE
+TCGA-MZ-A7D7-01 UVRAG 11 75912039 DPP3 11 66492716 frameshift 1 3 SOMATIC GRCh37 UVRAG-DPP3
+TCGA-P3-A5Q6-01 NELL2 12 44607169 MUC19 12 40397879 2 5 SOMATIC GRCh37 NELL2-MUC19
+TCGA-P3-A5Q6-01 KMT2A 11 118436944 ATP5L 11 118431024 in-frame 1 1 SOMATIC GRCh37 KMT2A-ATP5L
+TCGA-P3-A5QA-01 MYH9 22 36282713 RBFOX2 22 35746561 in-frame 30 48 SOMATIC GRCh37 MYH9-RBFOX2
+TCGA-P3-A5QA-01 FAM160A1 4 151482648 MYO18B 22 25868320 1 6 SOMATIC GRCh37 FAM160A1-MYO18B
+TCGA-P3-A5QE-01 SPAG7 17 4967720 DNAH17 17 78475833 frameshift 1 17 SOMATIC GRCh37 SPAG7-DNAH17
+TCGA-P3-A5QF-01 CPSF1 8 144399588 VPS28 8 144423922 in-frame 8 20 SOMATIC GRCh37 CPSF1-VPS28
+TCGA-P3-A6SW-01 ZBTB49 4 4290353 IGKJ5 2 88860603 13 0 SOMATIC GRCh37 ZBTB49-IGKJ5
+TCGA-P3-A6SW-01 MIDN 19 1255694 HMGB2P1 19 1203272 3 4 SOMATIC GRCh37 MIDN-HMGB2P1
+TCGA-P3-A6SX-01 RPS10 6 34424669 ITPR3 6 33655766 in-frame 2 10 SOMATIC GRCh37 RPS10-ITPR3
+TCGA-P3-A6SX-01 SAMD9 7 93114795 VPS50 7 93239866 2 6 SOMATIC GRCh37 SAMD9-VPS50
+TCGA-P3-A6T0-01 UBE2L3 22 21611043 BID 22 17739488 in-frame 1 11 SOMATIC GRCh37 UBE2L3-BID
+TCGA-P3-A6T3-01 NRP2 2 205697721 PARD3B 2 205615456 in-frame 2 7 SOMATIC GRCh37 NRP2-PARD3B
+TCGA-P3-A6T5-01 PRSS23 11 86823593 LGALS12 11 63510463 frameshift 7 26 SOMATIC GRCh37 PRSS23-LGALS12
+TCGA-P3-A6T5-01 APLP2 11 130070082 SLC22A10 11 63362380 4 2 SOMATIC GRCh37 APLP2-SLC22A10
+TCGA-P3-A6T7-01 CRYBG3 3 97900485 MYBPC1 12 101614496 frameshift 4 4 SOMATIC GRCh37 CRYBG3-MYBPC1
+TCGA-P3-A6T7-01 P4HB 17 81859181 CENPX 17 82019219 in-frame 1 4 SOMATIC GRCh37 P4HB-CENPX
+TCGA-P3-A6T7-01 RGMA 15 93072916 GLYATL1P3 11 59093934 in-frame 1 2 SOMATIC GRCh37 RGMA-GLYATL1P3
+TCGA-P3-A6T8-01 TMPRSS2 21 41471806 HSF2BP 21 43529962 in-frame 22 47 SOMATIC GRCh37 TMPRSS2-HSF2BP
+TCGA-P3-A6T8-01 SLC35G2 3 136819214 IL20RB 3 136980466 8 43 SOMATIC GRCh37 SLC35G2-IL20RB
+TCGA-P3-A6T8-01 EIF3A 10 119049801 TBC1D1 4 38089932 frameshift 7 6 SOMATIC GRCh37 EIF3A-TBC1D1
+TCGA-P3-A6T8-01 AGO1 1 35902337 SLC25A3P1 1 53415524 3 8 SOMATIC GRCh37 AGO1-SLC25A3P1
+TCGA-P3-A6T8-01 WNK1 12 754324 KDM4B 19 5016257 1 7 SOMATIC GRCh37 WNK1-KDM4B
+TCGA-QK-A64Z-01 TRA2B 3 185937825 HRH4 18 24468788 frameshift 6 27 SOMATIC GRCh37 TRA2B-HRH4
+TCGA-QK-A64Z-01 TMEM241 18 23384990 RIOK3 18 23466133 in-frame 5 12 SOMATIC GRCh37 TMEM241-RIOK3
+TCGA-QK-A64Z-01 YEATS2 3 183762279 HTR3C 3 184055312 in-frame 5 8 SOMATIC GRCh37 YEATS2-HTR3C
+TCGA-QK-A652-01 LENG1 19 54158282 NIT2 3 100341073 frameshift 8 25 SOMATIC GRCh37 LENG1-NIT2
+TCGA-QK-A6IG-01 STK39 2 168247228 PARVA 11 12473745 in-frame 2 5 SOMATIC GRCh37 STK39-PARVA
+TCGA-QK-A6IG-01 PRR12 19 49601918 SNRNP70 19 49101390 in-frame 1 3 SOMATIC GRCh37 PRR12-SNRNP70
+TCGA-QK-A6IH-01 DENND5B 12 31495810 TSPAN9 12 3083653 1 1 SOMATIC GRCh37 DENND5B-TSPAN9
+TCGA-QK-A6IJ-01 RALY 20 33994131 PXMP4 20 33714736 9 21 SOMATIC GRCh37 RALY-PXMP4
+TCGA-QK-A6V9-01 PLSCR1 3 146517006 MACROD2 20 16041201 frameshift 7 18 SOMATIC GRCh37 PLSCR1-MACROD2
+TCGA-QK-A6VB-01 DDB1 11 61323979 STX3 11 59773211 in-frame 25 79 SOMATIC GRCh37 DDB1-STX3
+TCGA-QK-A6VC-01 PBRM1 3 52678500 GLT8D1 3 52700496 10 16 SOMATIC GRCh37 PBRM1-GLT8D1
+TCGA-QK-A6VC-01 NFE2L1 17 48056598 COPZ2 17 48033944 in-frame 1 7 SOMATIC GRCh37 NFE2L1-COPZ2
+TCGA-QK-A8Z7-01 JUP 17 41758715 NT5C3B 17 41825657 in-frame 5 82 SOMATIC GRCh37 JUP-NT5C3B
+TCGA-QK-A8Z7-01 NMRAL2P 3 185968717 FBXL6 8 144357121 4 17 SOMATIC GRCh37 NMRAL2P-FBXL6
+TCGA-QK-A8Z7-01 FOXA3 19 45864525 RGS6 14 72454528 frameshift 4 5 SOMATIC GRCh37 FOXA3-RGS6
+TCGA-QK-A8Z8-01 TMEM165 4 55424643 KIAA1211 4 56272321 19 45 SOMATIC GRCh37 TMEM165-KIAA1211
+TCGA-QK-A8Z8-01 RAB28 4 13460699 STAP1 4 67590884 frameshift 1 9 SOMATIC GRCh37 RAB28-STAP1
+TCGA-QK-A8Z9-01 SP140L 2 230392229 PDE6D 2 231739202 10 33 SOMATIC GRCh37 SP140L-PDE6D
+TCGA-QK-A8Z9-01 AMOTL1 11 94729055 CEP295 11 93721312 in-frame 6 27 SOMATIC GRCh37 AMOTL1-CEP295
+TCGA-QK-A8Z9-01 HADHA 2 26230192 PRKAR1B 7 596304 frameshift 2 1 SOMATIC GRCh37 HADHA-PRKAR1B
+TCGA-QK-A8Z9-01 TENM3 4 182449083 NR3C2 4 148194862 in-frame 1 2 SOMATIC GRCh37 TENM3-NR3C2
+TCGA-QK-A8ZA-01 ESYT2 7 158797942 ZNF595 4 59430 in-frame 9 23 SOMATIC GRCh37 ESYT2-ZNF595
+TCGA-QK-A8ZA-01 ATP11A 13 112690455 NAXD 13 110622216 frameshift 8 18 SOMATIC GRCh37 ATP11A-NAXD
+TCGA-QK-A8ZA-01 PRRC2B 9 131394263 UHRF2 9 6504593 4 12 SOMATIC GRCh37 PRRC2B-UHRF2
+TCGA-QK-A8ZA-01 BTBD9 6 38577600 PLEKHB1 11 73660753 in-frame 1 9 SOMATIC GRCh37 BTBD9-PLEKHB1
+TCGA-QK-A8ZA-01 ZCCHC14 16 87460008 C16orf95 16 87141103 1 5 SOMATIC GRCh37 ZCCHC14-C16orf95
+TCGA-QK-A8ZB-01 HEBP1 12 12987152 NCK1 3 136948259 frameshift 35 189 SOMATIC GRCh37 HEBP1-NCK1
+TCGA-QK-A8ZB-01 NCK1 3 136946295 HEBP1 12 12975479 frameshift 44 96 SOMATIC GRCh37 NCK1-HEBP1
+TCGA-QK-A8ZB-01 IL20RB 3 136946295 HEBP1 12 12975479 44 54 SOMATIC GRCh37 IL20RB-HEBP1
+TCGA-QK-A8ZB-01 PDIA6 2 10812678 DKK3 11 11968487 frameshift 23 48 SOMATIC GRCh37 PDIA6-DKK3
+TCGA-QK-A8ZB-01 BRWD3 X 80791854 NALF1 13 107170786 in-frame 6 39 SOMATIC GRCh37 BRWD3-NALF1
+TCGA-QK-A8ZB-01 MAP4K3 2 39378066 EML4 2 42280850 in-frame 2 4 SOMATIC GRCh37 MAP4K3-EML4
+TCGA-QK-A8ZB-01 LPIN1 2 11820514 TIMM17A 1 201957511 frameshift 1 4 SOMATIC GRCh37 LPIN1-TIMM17A
+TCGA-RS-A6TO-01 NEAT1 11 65424014 CNIH2 11 66283035 85 152 SOMATIC GRCh37 NEAT1-CNIH2
+TCGA-RS-A6TO-01 NEAT1_3 11 65424014 CNIH2 11 66283035 85 98 SOMATIC GRCh37 NEAT1_3-CNIH2
+TCGA-RS-A6TO-01 IPPK 9 92669908 IARS 9 92256800 in-frame 2 19 SOMATIC GRCh37 IPPK-IARS
+TCGA-RS-A6TO-01 LRFN3 19 35935782 GMFG 19 39333126 2 2 SOMATIC GRCh37 LRFN3-GMFG
+TCGA-RS-A6TO-01 GLS 2 190902026 MYO1B 2 191276887 1 5 SOMATIC GRCh37 GLS-MYO1B
+TCGA-RS-A6TO-01 MYO9B 19 17102557 SPC24 19 11146430 in-frame 1 2 SOMATIC GRCh37 MYO9B-SPC24
+TCGA-RS-A6TP-01 RCBTB2 13 48510629 EPSTI1 13 42926429 in-frame 17 58 SOMATIC GRCh37 RCBTB2-EPSTI1
+TCGA-RS-A6TP-01 MAP2K4 17 12021001 PSMD12 17 67357578 in-frame 8 15 SOMATIC GRCh37 MAP2K4-PSMD12
+TCGA-RS-A6TP-01 TRPC4AP 20 35078046 SOGA1 20 36804902 in-frame 6 15 SOMATIC GRCh37 TRPC4AP-SOGA1
+TCGA-RS-A6TP-01 KIF3B 20 32316874 PXMP4 20 33714736 in-frame 3 2 SOMATIC GRCh37 KIF3B-PXMP4
+TCGA-RS-A6TP-01 NINL 20 25489244 TTLL9 20 31937396 in-frame 1 8 SOMATIC GRCh37 NINL-TTLL9
+TCGA-T2-A6WZ-01 USP9X X 41219231 BLVRB 19 40458545 in-frame 21 106 SOMATIC GRCh37 USP9X-BLVRB
+TCGA-T2-A6WZ-01 MACROD1 11 64151239 BAD 11 64284376 5 15 SOMATIC GRCh37 MACROD1-BAD
+TCGA-T2-A6X0-01 CCDC88C 14 91305765 RASGEF1B 4 81915358 in-frame 19 97 SOMATIC GRCh37 CCDC88C-RASGEF1B
+TCGA-T2-A6X0-01 BCL2L13 22 17655832 CUX2 12 111334441 in-frame 6 17 SOMATIC GRCh37 BCL2L13-CUX2
+TCGA-T2-A6X0-01 DAPP1 4 99863072 COL4A3 2 227311786 frameshift 4 7 SOMATIC GRCh37 DAPP1-COL4A3
+TCGA-T2-A6X0-01 COPS8 2 237099038 RIN3 14 92684987 4 1 SOMATIC GRCh37 COPS8-RIN3
+TCGA-T2-A6X0-01 UFSP2 4 185425866 EPHA4 2 221501172 frameshift 3 5 SOMATIC GRCh37 UFSP2-EPHA4
+TCGA-T2-A6X0-01 PEX14 1 10623116 CASZ1 1 10796650 1000 1000 SOMATIC GRCh37 PEX14-CASZ1
+TCGA-T3-A92M-01 ZMAT5 22 29766872 NIPSNAP1 22 29561862 5 11 SOMATIC GRCh37 ZMAT5-NIPSNAP1
+TCGA-T3-A92M-01 FHOD3 18 36298000 MOCOS 18 36256968 frameshift 4 8 SOMATIC GRCh37 FHOD3-MOCOS
+TCGA-T3-A92M-01 OSBPL1A 18 24239220 MYO16 13 109120370 frameshift 3 12 SOMATIC GRCh37 OSBPL1A-MYO16
+TCGA-T3-A92M-01 CCDC142 2 74481223 M1AP 2 74581847 in-frame 2 5 SOMATIC GRCh37 CCDC142-M1AP
+TCGA-T3-A92M-01 NCS1 9 130223159 TOR1B 9 129804073 frameshift 2 4 SOMATIC GRCh37 NCS1-TOR1B
+TCGA-T3-A92N-01 BCL2L13 22 17696210 VPS8 3 184898565 in-frame 4 11 SOMATIC GRCh37 BCL2L13-VPS8
+TCGA-TN-A7HJ-01 B4GALT1 9 33120419 HSPC324 9 136649065 7 16 SOMATIC GRCh37 B4GALT1-HSPC324
+TCGA-TN-A7HJ-01 GNRHR2 1 145919900 S100A13 1 153619038 4 11 SOMATIC GRCh37 GNRHR2-S100A13
+TCGA-TN-A7HJ-01 DNAAF5 7 770618 SMYD3 1 245929937 frameshift 2 1 SOMATIC GRCh37 DNAAF5-SMYD3
+TCGA-TN-A7HJ-01 SENP5 3 196930900 KCNMB3 3 179244693 frameshift 1 5 SOMATIC GRCh37 SENP5-KCNMB3
+TCGA-UF-A719-01 TULP4 6 158498812 FNDC1 6 159214945 in-frame 8 29 SOMATIC GRCh37 TULP4-FNDC1
+TCGA-UF-A71A-01 RABEP1 17 5332152 RNF167 17 4940487 6 28 SOMATIC GRCh37 RABEP1-RNF167
+TCGA-UF-A71A-01 TTK 6 80014586 BCKDHB 6 80200934 in-frame 8 16 SOMATIC GRCh37 TTK-BCKDHB
+TCGA-UF-A71B-01 TMEM241 18 23309680 PACS1 11 66193486 in-frame 1 5 SOMATIC GRCh37 TMEM241-PACS1
+TCGA-UF-A71E-01 EPC1 10 32305772 QPCT 2 37359580 frameshift 8 10 SOMATIC GRCh37 EPC1-QPCT
+TCGA-UF-A7J9-01 RASSF8 12 26068923 BMAL2 12 27400534 5 10 SOMATIC GRCh37 RASSF8-BMAL2
+TCGA-UF-A7J9-01 ERC1 12 1408247 HEBP1 12 12989415 in-frame 1 17 SOMATIC GRCh37 ERC1-HEBP1
+TCGA-UF-A7JA-01 STAG1 3 136398749 SPSB4 3 141147142 frameshift 4 7 SOMATIC GRCh37 STAG1-SPSB4
+TCGA-UF-A7JA-01 TRAPPC11 4 183679486 ING2 4 183510282 frameshift 3 3 SOMATIC GRCh37 TRAPPC11-ING2
+TCGA-UF-A7JA-01 PRKCD 3 53190001 SLC4A8 12 51489700 in-frame 2 5 SOMATIC GRCh37 PRKCD-SLC4A8
+TCGA-UF-A7JD-01 SNHG6 8 66925437 PPP1R42 8 67010831 13 39 SOMATIC GRCh37 SNHG6-PPP1R42
+TCGA-UF-A7JD-01 POGZ 1 151423397 SLC6A13 12 243813 in-frame 4 13 SOMATIC GRCh37 POGZ-SLC6A13
+TCGA-UF-A7JD-01 SLFN5 17 35243143 CDK5RAP3 17 47973519 3 15 SOMATIC GRCh37 SLFN5-CDK5RAP3
+TCGA-UF-A7JD-01 SMIM15 5 61161088 ELOVL7 5 60799230 2 11 SOMATIC GRCh37 SMIM15-ELOVL7
+TCGA-UF-A7JH-01 LEMD3 12 65171118 TSPAN8 12 71282819 1 11 SOMATIC GRCh37 LEMD3-TSPAN8
+TCGA-UF-A7JJ-01 AEBP2 12 19473355 PIK3C2G 12 18609535 frameshift 6 2 SOMATIC GRCh37 AEBP2-PIK3C2G
+TCGA-UF-A7JJ-01 PARP4 13 24512706 COL9A1 6 70283820 1 15 SOMATIC GRCh37 PARP4-COL9A1
+TCGA-UF-A7JK-01 POMK 8 43103830 ANK1 8 41734069 in-frame 9 26 SOMATIC GRCh37 POMK-ANK1
+TCGA-UF-A7JK-01 MAP4 3 47914817 ULK2 17 19777716 frameshift 1 11 SOMATIC GRCh37 MAP4-ULK2
+TCGA-UF-A7JV-01 YAP1 11 102162571 SHANK2 11 70502931 frameshift 3 4 SOMATIC GRCh37 YAP1-SHANK2
+TCGA-UF-A7JV-01 PACS1 11 66193573 FOLH1 11 49158043 in-frame 2 7 SOMATIC GRCh37 PACS1-FOLH1
+TCGA-UF-A7JV-01 UVRAG 11 75815524 RRAS2 11 14295855 in-frame 3 1 SOMATIC GRCh37 UVRAG-RRAS2
+TCGA-UF-A7JV-01 CTSC 11 88334937 MMP12 11 102873112 in-frame 1 7 SOMATIC GRCh37 CTSC-MMP12
+TCGA-UF-A7JV-01 LAMTOR1 11 72098289 UVRAG 11 75851883 in-frame 1 4 SOMATIC GRCh37 LAMTOR1-UVRAG
+TCGA-UP-A6WW-01 CYLD 16 50782466 UNGP1 16 51278781 13 17 SOMATIC GRCh37 CYLD-UNGP1
+TCGA-UP-A6WW-01 TSPAN5 4 98658146 MAPK10 4 86017375 in-frame 3 20 SOMATIC GRCh37 TSPAN5-MAPK10
+TCGA-UP-A6WW-01 C9orf3 9 94956015 CUEDC1 17 57885879 1 5 SOMATIC GRCh37 C9orf3-CUEDC1

data_timeline_sample_acquisition.txt

@@ -0,0 +1,520 @@
+PATIENT_ID START_DATE STOP_DATE EVENT_TYPE SAMPLE_ID COUNTRY SAMPLE_PRESCREENED SUBMITTED_FOR_LCE TOP_SLIDE_SUBMITTED TUMOR_NECROSIS_PERCENT TUMOR_NUCLEI_PERCENT TUMOR_WEIGHT VESSEL_USED
+TCGA-4P-AA8J 1 Sample Acquisition TCGA-4P-AA8J-01 United States Yes No Yes 10 80 100 Cryosette
+TCGA-BA-4074 6 Sample Acquisition TCGA-BA-4074-01 Yes Yes 0 70 210 Cassette
+TCGA-BA-4076 0 Sample Acquisition TCGA-BA-4076-01 Yes Yes 0 70 120 Cassette
+TCGA-BA-4078 0 Sample Acquisition TCGA-BA-4078-01 Yes Yes 0 70 380 Cassette
+TCGA-BA-5149 25 Sample Acquisition TCGA-BA-5149-01 Yes No 30 70 235 Cryovial
+TCGA-BA-5151 0 Sample Acquisition TCGA-BA-5151-01 Yes No 30 70 173 Cryovial
+TCGA-BA-5152 79 Sample Acquisition TCGA-BA-5152-01 Yes No 0 70 135 Cryovial
+TCGA-BA-5153 0 Sample Acquisition TCGA-BA-5153-01 Yes No 5 90 88 Cryovial
+TCGA-BA-5555 38 Sample Acquisition TCGA-BA-5555-01 Yes No 30 70 167 Cryovial
+TCGA-BA-5556 32 Sample Acquisition TCGA-BA-5556-01 Yes No 0 70 168 Cryovial
+TCGA-BA-5557 26 Sample Acquisition TCGA-BA-5557-01 Yes No 0 70 97 Cryovial
+TCGA-BA-5558 43 Sample Acquisition TCGA-BA-5558-01 Yes No 30 70 99 Cryovial
+TCGA-BA-5559 40 Sample Acquisition TCGA-BA-5559-01 Yes No 0 70 125 Cryovial
+TCGA-BA-6869 47 Sample Acquisition TCGA-BA-6869-01 United States Yes Yes 0 70 230 Cryovial
+TCGA-BA-6870 0 Sample Acquisition TCGA-BA-6870-01 United States Yes No 25 60 105 Cryovial
+TCGA-BA-6871 5 Sample Acquisition TCGA-BA-6871-01 United States Yes No 10 60 425 Cryovial
+TCGA-BA-6872 37 Sample Acquisition TCGA-BA-6872-01 United States Yes No 0 60 171 Cryovial
+TCGA-BA-6873 16 Sample Acquisition TCGA-BA-6873-01 United States Yes No 0 60 114 Cryovial
+TCGA-BA-7269 32 Sample Acquisition TCGA-BA-7269-01 United States Yes No 10 70 196 Cryovial
+TCGA-BA-A4IF 0 Sample Acquisition TCGA-BA-A4IF-01 United States No No No 220 Cryovial
+TCGA-BA-A4IG 41 Sample Acquisition TCGA-BA-A4IG-01 United States No No No 272 Cryovial
+TCGA-BA-A4IH 45 Sample Acquisition TCGA-BA-A4IH-01 United States No No No 458 Cryovial
+TCGA-BA-A4II 82 Sample Acquisition TCGA-BA-A4II-01 United States No No No 254 Cryovial
+TCGA-BA-A6D8 56 Sample Acquisition TCGA-BA-A6D8-01 United States Yes No No 10 60 233 Cryovial
+TCGA-BA-A6DA 22 Sample Acquisition TCGA-BA-A6DA-01 United States Yes Yes No 5 25 330 Cryovial
+TCGA-BA-A6DB 23 Sample Acquisition TCGA-BA-A6DB-01 United States Yes Yes No 1 10 165 Cryovial
+TCGA-BA-A6DD 26 Sample Acquisition TCGA-BA-A6DD-01 United States Yes Yes No 0 30 324 Cryovial
+TCGA-BA-A6DE 40 Sample Acquisition TCGA-BA-A6DE-01 United States Yes Yes No 0 20 214 Cryovial
+TCGA-BA-A6DF 0 Sample Acquisition TCGA-BA-A6DF-01 United States Yes Yes No 10 10 304 Cryovial
+TCGA-BA-A6DG 43 Sample Acquisition TCGA-BA-A6DG-01 United States Yes Yes No 30 30 223 Cryovial
+TCGA-BA-A6DI 0 Sample Acquisition TCGA-BA-A6DI-01 United States Yes Yes No 10 30 109 Cryovial
+TCGA-BA-A6DJ 58 Sample Acquisition TCGA-BA-A6DJ-01 United States Yes Yes No 0 40 486 Cryovial
+TCGA-BA-A6DL 0 Sample Acquisition TCGA-BA-A6DL-01 United States Yes Yes No 0 20 209 Cryovial
+TCGA-BA-A8YP 0 Sample Acquisition TCGA-BA-A8YP-01 United States Yes Yes No 5 50 323 Cryovial
+TCGA-BB-4217 52 Sample Acquisition TCGA-BB-4217-01 United States Yes Yes 30 70 150 Cryovial
+TCGA-BB-4223 36 Sample Acquisition TCGA-BB-4223-01 United States Yes Yes 30 70 100 Cryovial
+TCGA-BB-4224 -1 Sample Acquisition TCGA-BB-4224-01 United States Yes Yes 30 70 100 Cryovial
+TCGA-BB-4225 -10 Sample Acquisition TCGA-BB-4225-01 United States Yes Yes 30 70 100 Cryovial
+TCGA-BB-4227 7 Sample Acquisition TCGA-BB-4227-01 United States Yes Yes 30 70 100 Cryovial
+TCGA-BB-4228 30 Sample Acquisition TCGA-BB-4228-01 United States Yes Yes 30 70 100 Cryovial
+TCGA-BB-7861 0 Sample Acquisition TCGA-BB-7861-01 United States Yes No Yes 20 60 125 Cryovial
+TCGA-BB-7862 55 Sample Acquisition TCGA-BB-7862-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-7863 42 Sample Acquisition TCGA-BB-7863-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-7864 58 Sample Acquisition TCGA-BB-7864-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-7866 0 Sample Acquisition TCGA-BB-7866-01 United States Yes No Yes 20 70 125 Cryovial
+TCGA-BB-7870 20 Sample Acquisition TCGA-BB-7870-01 United States Yes No Yes 20 95 125 Cryovial
+TCGA-BB-7871 49 Sample Acquisition TCGA-BB-7871-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-7872 51 Sample Acquisition TCGA-BB-7872-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-8596 46 Sample Acquisition TCGA-BB-8596-01 United States Yes No Yes 20 75 125 Cryovial
+TCGA-BB-8601 0 Sample Acquisition TCGA-BB-8601-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-A5HU 30 Sample Acquisition TCGA-BB-A5HU-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-A5HY 36 Sample Acquisition TCGA-BB-A5HY-01 United States Yes No Yes 5 95 125 Cryovial
+TCGA-BB-A5HZ 46 Sample Acquisition TCGA-BB-A5HZ-01 United States Yes No Yes 5 95 125 Cryovial
+TCGA-BB-A6UM 28 Sample Acquisition TCGA-BB-A6UM-01 United States Yes No Yes 20 80 125 Cryovial
+TCGA-BB-A6UO 34 Sample Acquisition TCGA-BB-A6UO-01 United States Yes No Yes 10 90 125 Cryovial
+TCGA-C9-A47Z 5 Sample Acquisition TCGA-C9-A47Z-01 Vietnam Yes No Yes 0 75 350 Other
+TCGA-C9-A480 4 Sample Acquisition TCGA-C9-A480-01 Vietnam Yes Yes Yes 0 50 300 Other
+TCGA-CN-4722 0 Sample Acquisition TCGA-CN-4722-01 Yes No 30 70 123 Cryovial
+TCGA-CN-4723 43 Sample Acquisition TCGA-CN-4723-01 Yes No 30 70 120 Cryovial
+TCGA-CN-4725 17 Sample Acquisition TCGA-CN-4725-01 Yes No 30 70 114 Cryovial
+TCGA-CN-4726 30 Sample Acquisition TCGA-CN-4726-01 Yes No 30 70 125 Cryovial
+TCGA-CN-4727 5 Sample Acquisition TCGA-CN-4727-01 United States Yes No 30 70 123 Cryovial
+TCGA-CN-4728 0 Sample Acquisition TCGA-CN-4728-01 United States Yes No 30 70 104 Cryovial
+TCGA-CN-4729 55 Sample Acquisition TCGA-CN-4729-01 Yes No 30 70 100 Cryovial
+TCGA-CN-4730 54 Sample Acquisition TCGA-CN-4730-01 Yes No 30 70 138 Cryovial
+TCGA-CN-4731 22 Sample Acquisition TCGA-CN-4731-01 Yes No 30 70 100 Cryovial
+TCGA-CN-4733 42 Sample Acquisition TCGA-CN-4733-01 Yes No 30 70 100 Cryovial
+TCGA-CN-4734 16 Sample Acquisition TCGA-CN-4734-01 Yes No 30 70 100 Cryovial
+TCGA-CN-4735 0 Sample Acquisition TCGA-CN-4735-01 Yes No 30 70 150 Cryovial
+TCGA-CN-4736 48 Sample Acquisition TCGA-CN-4736-01 Yes No 30 70 127 Cryovial
+TCGA-CN-4737 14 Sample Acquisition TCGA-CN-4737-01 Yes No 30 70 253 Cryovial
+TCGA-CN-4738 43 Sample Acquisition TCGA-CN-4738-01 Yes No 30 70 267 Cryovial
+TCGA-CN-4739 46 Sample Acquisition TCGA-CN-4739-01 Yes No 30 70 258 Cryovial
+TCGA-CN-4740 21 Sample Acquisition TCGA-CN-4740-01 Yes No 30 70 305 Cryovial
+TCGA-CN-4741 35 Sample Acquisition TCGA-CN-4741-01 Yes No 30 70 238 Cryovial
+TCGA-CN-4742 46 Sample Acquisition TCGA-CN-4742-01 Yes No 30 70 656 Cryovial
+TCGA-CN-5355 26 Sample Acquisition TCGA-CN-5355-01 Yes No 30 70 246 Cryovial
+TCGA-CN-5356 9 Sample Acquisition TCGA-CN-5356-01 Yes No 30 70 125 Cryovial
+TCGA-CN-5358 21 Sample Acquisition TCGA-CN-5358-01 Yes No 30 70 212 Cryovial
+TCGA-CN-5359 14 Sample Acquisition TCGA-CN-5359-01 Yes No 30 70 177 Cryovial
+TCGA-CN-5360 0 Sample Acquisition TCGA-CN-5360-01 Yes No 30 70 280 Cryovial
+TCGA-CN-5361 12 Sample Acquisition TCGA-CN-5361-01 Yes No 30 70 284 Cryovial
+TCGA-CN-5363 3 Sample Acquisition TCGA-CN-5363-01 Yes No 30 70 225 Cryovial
+TCGA-CN-5364 79 Sample Acquisition TCGA-CN-5364-01 Yes No 30 70 217 Cryovial
+TCGA-CN-5365 30 Sample Acquisition TCGA-CN-5365-01 Yes No 30 70 164 Cryovial
+TCGA-CN-5366 7 Sample Acquisition TCGA-CN-5366-01 Yes No 30 70 398 Cryovial
+TCGA-CN-5367 34 Sample Acquisition TCGA-CN-5367-01 Yes No 30 70 249 Cryovial
+TCGA-CN-5369 0 Sample Acquisition TCGA-CN-5369-01 Yes No 30 70 266 Cryovial
+TCGA-CN-5370 53 Sample Acquisition TCGA-CN-5370-01 Yes No 30 70 2257 Cryovial
+TCGA-CN-5373 22 Sample Acquisition TCGA-CN-5373-01 Yes No 30 70 135 Cryovial
+TCGA-CN-5374 70 Sample Acquisition TCGA-CN-5374-01 Yes No 30 70 133 Cryovial
+TCGA-CN-6010 0 Sample Acquisition TCGA-CN-6010-01 Yes No 30 70 180 Cryovial
+TCGA-CN-6011 33 Sample Acquisition TCGA-CN-6011-01 Yes No 30 70 277 Cryovial
+TCGA-CN-6012 0 Sample Acquisition TCGA-CN-6012-01 United States Yes No 30 70 117 Cryovial
+TCGA-CN-6013 27 Sample Acquisition TCGA-CN-6013-01 United States Yes No 30 70 143 Cryovial
+TCGA-CN-6016 42 Sample Acquisition TCGA-CN-6016-01 United States Yes No 30 70 335 Cryovial
+TCGA-CN-6017 33 Sample Acquisition TCGA-CN-6017-01 United States Yes No 30 70 200 Cryovial
+TCGA-CN-6018 22 Sample Acquisition TCGA-CN-6018-01 United States Yes No 30 70 294 Cryovial
+TCGA-CN-6019 23 Sample Acquisition TCGA-CN-6019-01 United States Yes No 30 70 164 Cryovial
+TCGA-CN-6020 5 Sample Acquisition TCGA-CN-6020-01 United States Yes No 30 70 368 Cryovial
+TCGA-CN-6021 21 Sample Acquisition TCGA-CN-6021-01 United States Yes No 30 70 157 Cryovial
+TCGA-CN-6022 21 Sample Acquisition TCGA-CN-6022-01 United States Yes No 30 70 215 Cryovial
+TCGA-CN-6023 19 Sample Acquisition TCGA-CN-6023-01 United States Yes No 30 70 284 Cryovial
+TCGA-CN-6024 23 Sample Acquisition TCGA-CN-6024-01 United States Yes No 30 70 277 Cryovial
+TCGA-CN-6988 3 Sample Acquisition TCGA-CN-6988-01 United States Yes No 30 70 339 Cryovial
+TCGA-CN-6989 11 Sample Acquisition TCGA-CN-6989-01 United States Yes No 30 70 208 Cryovial
+TCGA-CN-6992 0 Sample Acquisition TCGA-CN-6992-01 United States Yes No 30 70 172 Cryovial
+TCGA-CN-6994 30 Sample Acquisition TCGA-CN-6994-01 United States Yes No 30 70 340 Cryovial
+TCGA-CN-6995 26 Sample Acquisition TCGA-CN-6995-01 United States Yes No 30 70 449 Cryovial
+TCGA-CN-6996 29 Sample Acquisition TCGA-CN-6996-01 United States Yes No 30 70 222 Cryovial
+TCGA-CN-6997 21 Sample Acquisition TCGA-CN-6997-01 United States Yes No 30 70 113 Cryovial
+TCGA-CN-6998 13 Sample Acquisition TCGA-CN-6998-01 United States Yes No 30 70 246 Cryovial
+TCGA-CN-A6UY 0 Sample Acquisition TCGA-CN-A6UY-01 United States Yes No Yes 5 80 205 Cryovial
+TCGA-CN-A6V1 0 Sample Acquisition TCGA-CN-A6V1-01 United States Yes No Yes 0 70 170 Cryovial
+TCGA-CN-A6V3 83 Sample Acquisition TCGA-CN-A6V3-01 United States Yes No Yes 20 70 223 Cryovial
+TCGA-CN-A6V6 33 Sample Acquisition TCGA-CN-A6V6-01 United States Yes No Yes 0 90 211 Cryovial
+TCGA-CN-A6V7 29 Sample Acquisition TCGA-CN-A6V7-01 United States Yes No Yes 0 80 147 Cryovial
+TCGA-CN-A49A 28 Sample Acquisition TCGA-CN-A49A-01 United States Yes No Yes 5 80 294 Cryovial
+TCGA-CN-A49B 0 Sample Acquisition TCGA-CN-A49B-01 United States Yes No Yes 0 70 274 Cryovial
+TCGA-CN-A49C 0 Sample Acquisition TCGA-CN-A49C-01 United States Yes No Yes 0 90 291 Cryovial
+TCGA-CN-A63T 9 Sample Acquisition TCGA-CN-A63T-01 United States Yes No Yes 0 80 167 Cryovial
+TCGA-CN-A63U 9 Sample Acquisition TCGA-CN-A63U-01 United States Yes No Yes 10 80 222 Cryovial
+TCGA-CN-A63V 23 Sample Acquisition TCGA-CN-A63V-01 United States Yes Yes Yes 30 70 748 Cryovial
+TCGA-CN-A63W 7 Sample Acquisition TCGA-CN-A63W-01 United States Yes No Yes 0 80 142 Cryovial
+TCGA-CN-A63Y 22 Sample Acquisition TCGA-CN-A63Y-01 United States Yes No Yes 0 70 266 Cryovial
+TCGA-CN-A497 23 Sample Acquisition TCGA-CN-A497-01 United States Yes No Yes 0 80 205 Cryovial
+TCGA-CN-A498 11 Sample Acquisition TCGA-CN-A498-01 United States Yes No Yes 0 90 181 Cryovial
+TCGA-CN-A499 32 Sample Acquisition TCGA-CN-A499-01 United States Yes Yes Yes 0 60 106 Cryovial
+TCGA-CN-A640 43 Sample Acquisition TCGA-CN-A640-01 United States Yes No Yes 0 70 154 Cryovial
+TCGA-CN-A641 115 Sample Acquisition TCGA-CN-A641-01 United States Yes No Yes 10 70 145 Cryovial
+TCGA-CN-A642 21 Sample Acquisition TCGA-CN-A642-01 United States Yes No Yes 0 90 447 Cryovial
+TCGA-CQ-5323 0 Sample Acquisition TCGA-CQ-5323-01 Canada Yes No 5 80 104 Cryovial
+TCGA-CQ-5324 0 Sample Acquisition TCGA-CQ-5324-01 Canada Yes No 5 70 107 Cryovial
+TCGA-CQ-5325 0 Sample Acquisition TCGA-CQ-5325-01 Canada Yes No 0 70 109 Cryovial
+TCGA-CQ-5326 14 Sample Acquisition TCGA-CQ-5326-01 Canada Yes No 20 70 103 Cryovial
+TCGA-CQ-5327 0 Sample Acquisition TCGA-CQ-5327-01 Canada Yes No 10 80 102 Cryovial
+TCGA-CQ-5329 0 Sample Acquisition TCGA-CQ-5329-01 Canada Yes No 10 70 102 Cryovial
+TCGA-CQ-5330 0 Sample Acquisition TCGA-CQ-5330-01 Canada Yes No 10 70 103 Cryovial
+TCGA-CQ-5331 43 Sample Acquisition TCGA-CQ-5331-01 Yes No 0 80 111 Cryovial
+TCGA-CQ-5332 0 Sample Acquisition TCGA-CQ-5332-01 Canada Yes No 20 70 114 Cryovial
+TCGA-CQ-5333 0 Sample Acquisition TCGA-CQ-5333-01 Canada Yes No 10 70 101 Cryovial
+TCGA-CQ-5334 0 Sample Acquisition TCGA-CQ-5334-01 Canada Yes No 10 80 100 Cryovial
+TCGA-CQ-6218 21 Sample Acquisition TCGA-CQ-6218-01 Canada Yes No 0 80 102 Cryovial
+TCGA-CQ-6219 86 Sample Acquisition TCGA-CQ-6219-01 Canada Yes No 5 80 109 Cryovial
+TCGA-CQ-6220 66 Sample Acquisition TCGA-CQ-6220-01 Canada Yes No 0 80 107 Cryovial
+TCGA-CQ-6222 93 Sample Acquisition TCGA-CQ-6222-01 Canada Yes No 9 70 102 Cryovial
+TCGA-CQ-6223 140 Sample Acquisition TCGA-CQ-6223-01 Canada Yes No 0 85 47 Cryovial
+TCGA-CQ-6224 0 Sample Acquisition TCGA-CQ-6224-01 Canada Yes No 0 70 90 Cryovial
+TCGA-CQ-6225 233 Sample Acquisition TCGA-CQ-6225-01 Canada Yes No 15 70 103 Cryovial
+TCGA-CQ-6227 48 Sample Acquisition TCGA-CQ-6227-01 Canada Yes No 10 70 102 Cryovial
+TCGA-CQ-6228 66 Sample Acquisition TCGA-CQ-6228-01 Canada Yes No 10 70 106 Cryovial
+TCGA-CQ-6229 56 Sample Acquisition TCGA-CQ-6229-01 Canada Yes No 0 70 99 Cryovial
+TCGA-CQ-7063 64 Sample Acquisition TCGA-CQ-7063-01 Canada Yes No No 0 90 91 Cryovial
+TCGA-CQ-7064 47 Sample Acquisition TCGA-CQ-7064-01 Canada Yes No No 0 90 103 Cryovial
+TCGA-CQ-7065 47 Sample Acquisition TCGA-CQ-7065-01 Canada Yes No 0 80 88 Cryovial
+TCGA-CQ-7067 38 Sample Acquisition TCGA-CQ-7067-01 Canada Yes No 0 70 124 Cryovial
+TCGA-CQ-7068 57 Sample Acquisition TCGA-CQ-7068-01 Canada Yes No 0 80 108 Cryovial
+TCGA-CQ-7069 82 Sample Acquisition TCGA-CQ-7069-01 Canada Yes No No 0 80 87 Cryovial
+TCGA-CQ-7071 55 Sample Acquisition TCGA-CQ-7071-01 Canada Yes No No 0 70 130 Cryovial
+TCGA-CQ-7072 64 Sample Acquisition TCGA-CQ-7072-01 Canada Yes No No 0 80 117 Cryovial
+TCGA-CQ-A4C6 35 Sample Acquisition TCGA-CQ-A4C6-01 Canada Yes No No 5 70 80 Cryovial
+TCGA-CQ-A4C9 89 Sample Acquisition TCGA-CQ-A4C9-01 Canada Yes No No 5 70 78 Cryovial
+TCGA-CQ-A4CB 42 Sample Acquisition TCGA-CQ-A4CB-01 Canada Yes No No 5 70 77 Cryovial
+TCGA-CQ-A4CD 113 Sample Acquisition TCGA-CQ-A4CD-01 Canada Yes No No 5 70 85 Cryovial
+TCGA-CQ-A4CE 89 Sample Acquisition TCGA-CQ-A4CE-01 Canada Yes No No 0 70 107 Cryovial
+TCGA-CQ-A4CG 57 Sample Acquisition TCGA-CQ-A4CG-01 Canada Yes No No 5 70 113 Cryovial
+TCGA-CQ-A4CH 46 Sample Acquisition TCGA-CQ-A4CH-01 Canada Yes No No 5 70 120 Cryovial
+TCGA-CQ-A4CI 55 Sample Acquisition TCGA-CQ-A4CI-01 Canada Yes No No 5 70 81 Cryovial
+TCGA-CR-5243 13 Sample Acquisition TCGA-CR-5243-01 Yes No 20 80 100 Cryovial
+TCGA-CR-5247 0 Sample Acquisition TCGA-CR-5247-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-5248 39 Sample Acquisition TCGA-CR-5248-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-5249 0 Sample Acquisition TCGA-CR-5249-01 Yes No 20 80 100 Cryovial
+TCGA-CR-5250 28 Sample Acquisition TCGA-CR-5250-01 Yes No 20 80 100 Cryovial
+TCGA-CR-6467 0 Sample Acquisition TCGA-CR-6467-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6470 42 Sample Acquisition TCGA-CR-6470-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6471 34 Sample Acquisition TCGA-CR-6471-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6472 18 Sample Acquisition TCGA-CR-6472-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6473 0 Sample Acquisition TCGA-CR-6473-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6474 44 Sample Acquisition TCGA-CR-6474-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6477 0 Sample Acquisition TCGA-CR-6477-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6478 34 Sample Acquisition TCGA-CR-6478-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6480 0 Sample Acquisition TCGA-CR-6480-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6481 8 Sample Acquisition TCGA-CR-6481-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6482 0 Sample Acquisition TCGA-CR-6482-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6484 48 Sample Acquisition TCGA-CR-6484-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6487 36 Sample Acquisition TCGA-CR-6487-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6488 49 Sample Acquisition TCGA-CR-6488-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6491 70 Sample Acquisition TCGA-CR-6491-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6492 35 Sample Acquisition TCGA-CR-6492-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-6493 25 Sample Acquisition TCGA-CR-6493-01 United States Yes No 20 80 100 Cryovial
+TCGA-CR-7364 35 Sample Acquisition TCGA-CR-7364-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7365 43 Sample Acquisition TCGA-CR-7365-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7367 48 Sample Acquisition TCGA-CR-7367-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7368 54 Sample Acquisition TCGA-CR-7368-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7369 31 Sample Acquisition TCGA-CR-7369-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7370 0 Sample Acquisition TCGA-CR-7370-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7371 82 Sample Acquisition TCGA-CR-7371-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7372 55 Sample Acquisition TCGA-CR-7372-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7373 36 Sample Acquisition TCGA-CR-7373-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7374 0 Sample Acquisition TCGA-CR-7374-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7376 47 Sample Acquisition TCGA-CR-7376-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7377 76 Sample Acquisition TCGA-CR-7377-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7379 46 Sample Acquisition TCGA-CR-7379-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7380 58 Sample Acquisition TCGA-CR-7380-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7382 62 Sample Acquisition TCGA-CR-7382-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7383 0 Sample Acquisition TCGA-CR-7383-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7385 30 Sample Acquisition TCGA-CR-7385-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7386 49 Sample Acquisition TCGA-CR-7386-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7388 33 Sample Acquisition TCGA-CR-7388-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7389 17 Sample Acquisition TCGA-CR-7389-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7390 74 Sample Acquisition TCGA-CR-7390-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7391 51 Sample Acquisition TCGA-CR-7391-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7392 32 Sample Acquisition TCGA-CR-7392-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7393 26 Sample Acquisition TCGA-CR-7393-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7394 45 Sample Acquisition TCGA-CR-7394-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7395 47 Sample Acquisition TCGA-CR-7395-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7397 16 Sample Acquisition TCGA-CR-7397-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7398 7 Sample Acquisition TCGA-CR-7398-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7399 39 Sample Acquisition TCGA-CR-7399-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7401 61 Sample Acquisition TCGA-CR-7401-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7402 0 Sample Acquisition TCGA-CR-7402-01 United States Yes No 20 80 50 Cryovial
+TCGA-CR-7404 0 Sample Acquisition TCGA-CR-7404-01 United States Yes No 20 80 100 Cryovial
+TCGA-CV-5430 0 Sample Acquisition TCGA-CV-5430-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5431 0 Sample Acquisition TCGA-CV-5431-01 Yes No 0 80 200 Cryovial
+TCGA-CV-5432 0 Sample Acquisition TCGA-CV-5432-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5434 0 Sample Acquisition TCGA-CV-5434-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5435 0 Sample Acquisition TCGA-CV-5435-01 Yes No 0 70 200 Cryovial
+TCGA-CV-5436 0 Sample Acquisition TCGA-CV-5436-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5439 0 Sample Acquisition TCGA-CV-5439-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5440 0 Sample Acquisition TCGA-CV-5440-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5441 0 Sample Acquisition TCGA-CV-5441-01 Yes No 0 70 200 Cryovial
+TCGA-CV-5442 2 Sample Acquisition TCGA-CV-5442-01 Yes No 0 75 200 Cryovial
+TCGA-CV-5443 0 Sample Acquisition TCGA-CV-5443-01 Yes No 0 70 200 Cryovial
+TCGA-CV-5444 0 Sample Acquisition TCGA-CV-5444-01 Yes No 0 70 200 Cryovial
+TCGA-CV-5966 0 Sample Acquisition TCGA-CV-5966-01 Yes No 30 70 200 Cryovial
+TCGA-CV-5970 0 Sample Acquisition TCGA-CV-5970-01 Yes No 30 70 200 Cryovial
+TCGA-CV-5971 0 Sample Acquisition TCGA-CV-5971-01 Yes No 30 70 200 Cryovial
+TCGA-CV-5973 0 Sample Acquisition TCGA-CV-5973-01 Yes No 30 70 200 Cryovial
+TCGA-CV-5976 0 Sample Acquisition TCGA-CV-5976-01 Yes No 30 70 200 Cryovial
+TCGA-CV-5977 0 Sample Acquisition TCGA-CV-5977-01 Yes No 20 80 200 Cryovial
+TCGA-CV-5978 0 Sample Acquisition TCGA-CV-5978-01 Yes No 30 70 200 Cryovial
+TCGA-CV-5979 0 Sample Acquisition TCGA-CV-5979-01 United States Yes No 20 80 200 Cryovial
+TCGA-CV-6003 0 Sample Acquisition TCGA-CV-6003-01 Yes No 20 80 200 Cryovial
+TCGA-CV-6433 0 Sample Acquisition TCGA-CV-6433-01 United States Yes No 20 80 200 Cryovial
+TCGA-CV-6436 0 Sample Acquisition TCGA-CV-6436-01 United States Yes No 20 80 200 Cryovial
+TCGA-CV-6441 0 Sample Acquisition TCGA-CV-6441-01 United States Yes No 25 75 200 Cryovial
+TCGA-CV-6933 0 Sample Acquisition TCGA-CV-6933-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6934 0 Sample Acquisition TCGA-CV-6934-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6935 0 Sample Acquisition TCGA-CV-6935-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6936 0 Sample Acquisition TCGA-CV-6936-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6937 0 Sample Acquisition TCGA-CV-6937-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6938 0 Sample Acquisition TCGA-CV-6938-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6939 0 Sample Acquisition TCGA-CV-6939-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6940 0 Sample Acquisition TCGA-CV-6940-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6941 0 Sample Acquisition TCGA-CV-6941-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6942 0 Sample Acquisition TCGA-CV-6942-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6943 0 Sample Acquisition TCGA-CV-6943-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6945 0 Sample Acquisition TCGA-CV-6945-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6948 0 Sample Acquisition TCGA-CV-6948-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6950 0 Sample Acquisition TCGA-CV-6950-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6951 0 Sample Acquisition TCGA-CV-6951-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6952 0 Sample Acquisition TCGA-CV-6952-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6953 0 Sample Acquisition TCGA-CV-6953-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6954 0 Sample Acquisition TCGA-CV-6954-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6955 0 Sample Acquisition TCGA-CV-6955-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6956 0 Sample Acquisition TCGA-CV-6956-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6959 0 Sample Acquisition TCGA-CV-6959-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6960 0 Sample Acquisition TCGA-CV-6960-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6961 0 Sample Acquisition TCGA-CV-6961-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-6962 0 Sample Acquisition TCGA-CV-6962-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7089 0 Sample Acquisition TCGA-CV-7089-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7090 0 Sample Acquisition TCGA-CV-7090-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7091 0 Sample Acquisition TCGA-CV-7091-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7095 0 Sample Acquisition TCGA-CV-7095-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7097 18 Sample Acquisition TCGA-CV-7097-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7099 0 Sample Acquisition TCGA-CV-7099-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7100 0 Sample Acquisition TCGA-CV-7100-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7101 0 Sample Acquisition TCGA-CV-7101-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7102 0 Sample Acquisition TCGA-CV-7102-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7103 0 Sample Acquisition TCGA-CV-7103-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7104 0 Sample Acquisition TCGA-CV-7104-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7177 0 Sample Acquisition TCGA-CV-7177-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7178 0 Sample Acquisition TCGA-CV-7178-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7180 0 Sample Acquisition TCGA-CV-7180-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7183 0 Sample Acquisition TCGA-CV-7183-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7235 0 Sample Acquisition TCGA-CV-7235-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7236 0 Sample Acquisition TCGA-CV-7236-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7238 18 Sample Acquisition TCGA-CV-7238-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7242 -7 Sample Acquisition TCGA-CV-7242-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7243 0 Sample Acquisition TCGA-CV-7243-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7245 0 Sample Acquisition TCGA-CV-7245-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7247 0 Sample Acquisition TCGA-CV-7247-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7248 0 Sample Acquisition TCGA-CV-7248-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7250 0 Sample Acquisition TCGA-CV-7250-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7252 0 Sample Acquisition TCGA-CV-7252-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7253 0 Sample Acquisition TCGA-CV-7253-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7254 0 Sample Acquisition TCGA-CV-7254-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7255 0 Sample Acquisition TCGA-CV-7255-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7261 0 Sample Acquisition TCGA-CV-7261-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7263 0 Sample Acquisition TCGA-CV-7263-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7406 507 Sample Acquisition TCGA-CV-7406-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7407 0 Sample Acquisition TCGA-CV-7407-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7409 0 Sample Acquisition TCGA-CV-7409-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7410 718 Sample Acquisition TCGA-CV-7410-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7411 0 Sample Acquisition TCGA-CV-7411-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7413 0 Sample Acquisition TCGA-CV-7413-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7414 0 Sample Acquisition TCGA-CV-7414-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7415 0 Sample Acquisition TCGA-CV-7415-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7416 445 Sample Acquisition TCGA-CV-7416-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7418 0 Sample Acquisition TCGA-CV-7418-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7421 0 Sample Acquisition TCGA-CV-7421-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7422 0 Sample Acquisition TCGA-CV-7422-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7423 0 Sample Acquisition TCGA-CV-7423-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7424 0 Sample Acquisition TCGA-CV-7424-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7425 0 Sample Acquisition TCGA-CV-7425-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7427 0 Sample Acquisition TCGA-CV-7427-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7428 0 Sample Acquisition TCGA-CV-7428-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7429 0 Sample Acquisition TCGA-CV-7429-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7430 0 Sample Acquisition TCGA-CV-7430-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7432 0 Sample Acquisition TCGA-CV-7432-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7433 0 Sample Acquisition TCGA-CV-7433-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7434 0 Sample Acquisition TCGA-CV-7434-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7435 0 Sample Acquisition TCGA-CV-7435-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7437 34 Sample Acquisition TCGA-CV-7437-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7438 0 Sample Acquisition TCGA-CV-7438-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7440 216 Sample Acquisition TCGA-CV-7440-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7446 0 Sample Acquisition TCGA-CV-7446-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-7568 419 Sample Acquisition TCGA-CV-7568-01 United States Yes No 30 70 200 Cryovial
+TCGA-CV-A6JD 0 Sample Acquisition TCGA-CV-A6JD-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JE 0 Sample Acquisition TCGA-CV-A6JE-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JM 0 Sample Acquisition TCGA-CV-A6JM-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JN 0 Sample Acquisition TCGA-CV-A6JN-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JO 0 Sample Acquisition TCGA-CV-A6JO-01 United States Yes Yes Yes 30 70 Cryovial
+TCGA-CV-A6JT 0 Sample Acquisition TCGA-CV-A6JT-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JU 0 Sample Acquisition TCGA-CV-A6JU-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JY 0 Sample Acquisition TCGA-CV-A6JY-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6JZ 0 Sample Acquisition TCGA-CV-A6JZ-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6K0 0 Sample Acquisition TCGA-CV-A6K0-01 United States Yes Yes Yes 30 70 Cryovial
+TCGA-CV-A6K1 0 Sample Acquisition TCGA-CV-A6K1-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A6K2 0 Sample Acquisition TCGA-CV-A6K2-01 United States Yes Yes Yes 200 Cryovial
+TCGA-CV-A45O 0 Sample Acquisition TCGA-CV-A45O-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45P 0 Sample Acquisition TCGA-CV-A45P-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45Q 0 Sample Acquisition TCGA-CV-A45Q-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45R 0 Sample Acquisition TCGA-CV-A45R-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45T 0 Sample Acquisition TCGA-CV-A45T-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45U 0 Sample Acquisition TCGA-CV-A45U-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45V 0 Sample Acquisition TCGA-CV-A45V-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45W 0 Sample Acquisition TCGA-CV-A45W-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45X 0 Sample Acquisition TCGA-CV-A45X-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45Y 0 Sample Acquisition TCGA-CV-A45Y-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A45Z 0 Sample Acquisition TCGA-CV-A45Z-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A460 0 Sample Acquisition TCGA-CV-A460-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A461 0 Sample Acquisition TCGA-CV-A461-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A463 0 Sample Acquisition TCGA-CV-A463-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A464 0 Sample Acquisition TCGA-CV-A464-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A465 0 Sample Acquisition TCGA-CV-A465-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CV-A468 0 Sample Acquisition TCGA-CV-A468-01 United States Yes No Yes 30 70 200 Cryovial
+TCGA-CX-7085 15 Sample Acquisition TCGA-CX-7085-01 United States Yes Yes 15 70 200 Cryovial
+TCGA-CX-7086 26 Sample Acquisition TCGA-CX-7086-01 United States Yes Yes 10 85 200 Cryovial
+TCGA-CX-7219 26 Sample Acquisition TCGA-CX-7219-01 United States Yes Yes 15 75 200 Cryovial
+TCGA-CX-A4AQ 0 Sample Acquisition TCGA-CX-A4AQ-01 United States Yes No No 0 75 100 Cryovial
+TCGA-D6-6515 36 Sample Acquisition TCGA-D6-6515-01 Poland Yes Yes 10 80 227 Cryovial
+TCGA-D6-6516 18 Sample Acquisition TCGA-D6-6516-01 Poland Yes Yes 20 80 192 Cryovial
+TCGA-D6-6517 11 Sample Acquisition TCGA-D6-6517-01 Poland Yes Yes 10 90 Cryovial
+TCGA-D6-6823 9 Sample Acquisition TCGA-D6-6823-01 Poland Yes Yes 10 90 310 Cryovial
+TCGA-D6-6824 42 Sample Acquisition TCGA-D6-6824-01 Poland Yes Yes 20 80 265 Cryovial
+TCGA-D6-6825 0 Sample Acquisition TCGA-D6-6825-01 Poland Yes Yes 5 95 166 Cryovial
+TCGA-D6-6826 20 Sample Acquisition TCGA-D6-6826-01 Poland Yes Yes 10 99 255 Cryovial
+TCGA-D6-6827 15 Sample Acquisition TCGA-D6-6827-01 Poland Yes Yes 5 90 182 Cryovial
+TCGA-D6-8568 0 Sample Acquisition TCGA-D6-8568-01 Poland Yes No Yes 1 75 100 Cryovial
+TCGA-D6-8569 22 Sample Acquisition TCGA-D6-8569-01 Poland Yes No Yes 5 95 100 Cryovial
+TCGA-D6-A4Z9 0 Sample Acquisition TCGA-D6-A4Z9-01 Poland Yes No Yes 10 70 165 Cryovial
+TCGA-D6-A4ZB 0 Sample Acquisition TCGA-D6-A4ZB-01 Poland Yes No Yes 1 75 123 Cryovial
+TCGA-D6-A6EK 0 Sample Acquisition TCGA-D6-A6EK-01 Poland Yes No Yes 5 80 136 Cryovial
+TCGA-D6-A6EM 1 Sample Acquisition TCGA-D6-A6EM-01 Poland Yes No Yes 5 80 109 Cryovial
+TCGA-D6-A6EN 0 Sample Acquisition TCGA-D6-A6EN-01 Poland Yes No Yes 5 99 100 Cryovial
+TCGA-D6-A6EO 0 Sample Acquisition TCGA-D6-A6EO-01 Poland Yes No Yes 10 80 298 Cryovial
+TCGA-D6-A6EP -9 Sample Acquisition TCGA-D6-A6EP-01 Poland Yes No Yes 15 92 298 Cryovial
+TCGA-D6-A6EQ -1 Sample Acquisition TCGA-D6-A6EQ-01 Poland Yes No Yes 10 75 180 Cryovial
+TCGA-D6-A6ES 39 Sample Acquisition TCGA-D6-A6ES-01 Poland Yes No Yes 10 95 100 Cryovial
+TCGA-D6-A74Q 0 Sample Acquisition TCGA-D6-A74Q-01 Poland Yes No Yes 1 85 100 Cryovial
+TCGA-DQ-5624 0 Sample Acquisition TCGA-DQ-5624-01 United States Yes Yes 10 90 180 Cryomold
+TCGA-DQ-5625 0 Sample Acquisition TCGA-DQ-5625-01 United States Yes Yes 0 90 120 Cryomold
+TCGA-DQ-5629 20 Sample Acquisition TCGA-DQ-5629-01 United States Yes Yes 0 80 107 Cryomold
+TCGA-DQ-5630 0 Sample Acquisition TCGA-DQ-5630-01 United States Yes Yes 5 70 200 Cryomold
+TCGA-DQ-5631 0 Sample Acquisition TCGA-DQ-5631-01 United States Yes Yes 0 100 100 Cryomold
+TCGA-DQ-7588 0 Sample Acquisition TCGA-DQ-7588-01 United States Yes Yes 0 70 320 Cryomold
+TCGA-DQ-7589 0 Sample Acquisition TCGA-DQ-7589-01 United States Yes Yes 5 80 224 Cryomold
+TCGA-DQ-7590 0 Sample Acquisition TCGA-DQ-7590-01 United States Yes Yes 0 85 144 Cryomold
+TCGA-DQ-7591 0 Sample Acquisition TCGA-DQ-7591-01 United States Yes Yes 0 90 300 Cryomold
+TCGA-DQ-7592 0 Sample Acquisition TCGA-DQ-7592-01 United States Yes Yes 0 85 120 Cryomold
+TCGA-DQ-7593 0 Sample Acquisition TCGA-DQ-7593-01 United States Yes Yes 5 90 128 Cryomold
+TCGA-DQ-7594 0 Sample Acquisition TCGA-DQ-7594-01 United States Yes Yes 5 90 200 Cryomold
+TCGA-DQ-7595 0 Sample Acquisition TCGA-DQ-7595-01 United States Yes Yes 5 95 120 Cryomold
+TCGA-DQ-7596 0 Sample Acquisition TCGA-DQ-7596-01 United States Yes No Yes 0 90 120 Cryomold
+TCGA-F7-7848 0 Sample Acquisition TCGA-F7-7848-01 Russia Yes Yes 3 85 692 Cassette
+TCGA-F7-8298 0 Sample Acquisition TCGA-F7-8298-01 Russia Yes No Yes 7 73 1195 Cassette
+TCGA-F7-8489 0 Sample Acquisition TCGA-F7-8489-01 Russia Yes Yes Yes 0 30 645 Cassette
+TCGA-F7-A50G 0 Sample Acquisition TCGA-F7-A50G-01 Russia Yes No Yes 0 90 856 Cassette
+TCGA-F7-A50I 76 Sample Acquisition TCGA-F7-A50I-01 United States Yes No Yes 0 100 158 Cassette
+TCGA-F7-A50J 32 Sample Acquisition TCGA-F7-A50J-01 United States Yes No Yes 0 88 151 Cassette
+TCGA-F7-A61S 2 Sample Acquisition TCGA-F7-A61S-01 Ukraine Yes No Yes 0 70 1394 Cassette
+TCGA-F7-A61V -4 Sample Acquisition TCGA-F7-A61V-01 United States Yes No Yes 0 98 330 Cassette
+TCGA-F7-A61W 8 Sample Acquisition TCGA-F7-A61W-01 Vietnam Yes No Yes 0 80 613 Cassette
+TCGA-F7-A620 13 Sample Acquisition TCGA-F7-A620-01 Ukraine Yes No Yes 0 60 742 Cassette
+TCGA-F7-A622 13 Sample Acquisition TCGA-F7-A622-01 Ukraine Yes No Yes 0 95 355 Cassette
+TCGA-F7-A623 0 Sample Acquisition TCGA-F7-A623-01 Russia Yes Yes Yes 0 50 1043 Cassette
+TCGA-F7-A624 0 Sample Acquisition TCGA-F7-A624-01 Russia Yes No Yes 0 100 584 Cassette
+TCGA-H7-7774 30 Sample Acquisition TCGA-H7-7774-01 United States Yes Yes 0 20 150 Cryovial
+TCGA-H7-8501 19 Sample Acquisition TCGA-H7-8501-01 United States Yes No Yes 10 70 270 Cryovial
+TCGA-H7-8502 30 Sample Acquisition TCGA-H7-8502-01 United States Yes Yes Yes 45 35 160 Cryovial
+TCGA-H7-A6C4 21 Sample Acquisition TCGA-H7-A6C4-01 United States Yes Yes Yes 0 55 170 Cryovial
+TCGA-H7-A6C5 13 Sample Acquisition TCGA-H7-A6C5-01 United States Yes No Yes 0 70 150 Cryovial
+TCGA-H7-A76A 8 Sample Acquisition TCGA-H7-A76A-01 United States Yes Yes Yes 0 40 530 Cryovial
+TCGA-HD-7229 0 Sample Acquisition TCGA-HD-7229-01 United States Yes Yes 8 60 21 Cryovial
+TCGA-HD-7753 0 Sample Acquisition TCGA-HD-7753-01 United States Yes Yes 0 68 33 Cryovial
+TCGA-HD-7754 21 Sample Acquisition TCGA-HD-7754-01 United States Yes Yes 0 80 155 Cryovial
+TCGA-HD-7831 0 Sample Acquisition TCGA-HD-7831-01 United States Yes Yes 0 60 28 Cryovial
+TCGA-HD-7832 0 Sample Acquisition TCGA-HD-7832-01 United States Yes Yes 0 75 8 Cryovial
+TCGA-HD-7917 37 Sample Acquisition TCGA-HD-7917-01 United States Yes No Yes 0 60 54 Cryovial
+TCGA-HD-8224 55 Sample Acquisition TCGA-HD-8224-01 United States Yes No Yes 0 70 114 Cryovial
+TCGA-HD-8314 39 Sample Acquisition TCGA-HD-8314-01 United States Yes No Yes 0 70 182 Cryovial
+TCGA-HD-8634 24 Sample Acquisition TCGA-HD-8634-01 United States Yes No Yes 0 65 90 Cryovial
+TCGA-HD-8635 25 Sample Acquisition TCGA-HD-8635-01 United States Yes No Yes 0 65 74 Cryovial
+TCGA-HD-A4C1 3 Sample Acquisition TCGA-HD-A4C1-01 United States Yes No Yes 0 90 74 Cryovial
+TCGA-HD-A6HZ 108 Sample Acquisition TCGA-HD-A6HZ-01 United States Yes No No 0 70 68 Cryovial
+TCGA-HD-A6I0 27 Sample Acquisition TCGA-HD-A6I0-01 United States Yes No No 0 80 48 Cryovial
+TCGA-HD-A633 33 Sample Acquisition TCGA-HD-A633-01 United States Yes No No 10 85 70 Cryovial
+TCGA-HD-A634 6 Sample Acquisition TCGA-HD-A634-01 United States Yes No No 3 90 52 Cryovial
+TCGA-HL-7533 0 Sample Acquisition TCGA-HL-7533-01 United States Yes Yes 0 80 200 Cryovial
+TCGA-IQ-7630 47 Sample Acquisition TCGA-IQ-7630-01 United States Yes Yes 0 90 150 Polypropylene Tube
+TCGA-IQ-7631 49 Sample Acquisition TCGA-IQ-7631-01 United States Yes Yes 0 80 150 Polypropylene Tube
+TCGA-IQ-7632 36 Sample Acquisition TCGA-IQ-7632-01 United States Yes Yes 0 90 150 Polypropylene Tube
+TCGA-IQ-A6SG -4 Sample Acquisition TCGA-IQ-A6SG-01 United States Yes No Yes 0 80 200 Cassette
+TCGA-IQ-A6SH 0 Sample Acquisition TCGA-IQ-A6SH-01 United States Yes No Yes 0 80 200 Cassette
+TCGA-IQ-A61E 47 Sample Acquisition TCGA-IQ-A61E-01 United States Yes No Yes 0 80 200 Cassette
+TCGA-IQ-A61G 34 Sample Acquisition TCGA-IQ-A61G-01 United States Yes No Yes 0 80 200 15 Ml Tube
+TCGA-IQ-A61H 52 Sample Acquisition TCGA-IQ-A61H-01 United States Yes No Yes 0 70 200 15 Ml Tube
+TCGA-IQ-A61I 0 Sample Acquisition TCGA-IQ-A61I-01 United States Yes No Yes 0 90 200 Cassette
+TCGA-IQ-A61J 0 Sample Acquisition TCGA-IQ-A61J-01 United States Yes No Yes 0 80 200 15Ml Tube
+TCGA-IQ-A61K 55 Sample Acquisition TCGA-IQ-A61K-01 United States Yes No Yes 0 90 200 15Ml Tube
+TCGA-IQ-A61L 20 Sample Acquisition TCGA-IQ-A61L-01 United States Yes No Yes 0 100 200 15Ml Tube
+TCGA-IQ-A61O 15 Sample Acquisition TCGA-IQ-A61O-01 United States Yes No Yes 0 100 200 15 Ml Tube
+TCGA-KU-A6H7 21 Sample Acquisition TCGA-KU-A6H7-01 United States Yes No Yes 0 90 105 Other
+TCGA-KU-A6H8 14 Sample Acquisition TCGA-KU-A6H8-01 United States Yes Yes Yes 0 35 785 Other
+TCGA-MT-A7BN 0 Sample Acquisition TCGA-MT-A7BN-01 United States Yes Yes Yes 5 50 170 Cryomold
+TCGA-MT-A51W 12 Sample Acquisition TCGA-MT-A51W-01 United States Yes No Yes 0 70 150 Cryomold
+TCGA-MT-A51X 29 Sample Acquisition TCGA-MT-A51X-01 United States Yes No Yes 0 80 140 Cryomold
+TCGA-MT-A67A 29 Sample Acquisition TCGA-MT-A67A-01 United States Yes No Yes 10 80 60 Cryovial
+TCGA-MT-A67D 39 Sample Acquisition TCGA-MT-A67D-01 United States Yes No Yes 0 60 300 Cryomold
+TCGA-MT-A67F 27 Sample Acquisition TCGA-MT-A67F-01 United States Yes No Yes 0 90 160 Cryomold
+TCGA-MT-A67G 0 Sample Acquisition TCGA-MT-A67G-01 United States Yes No Yes 0 80 170 Cryomold
+TCGA-MZ-A5BI 15 Sample Acquisition TCGA-MZ-A5BI-01 United States Yes No Yes 2 70 250 Other
+TCGA-MZ-A6I9 36 Sample Acquisition TCGA-MZ-A6I9-01 United States Yes No Yes 0 60 250 Cryovial
+TCGA-MZ-A7D7 37 Sample Acquisition TCGA-MZ-A7D7-01 United States Yes No Yes 0 70 87 Cryovial
+TCGA-P3-A5Q5 0 Sample Acquisition TCGA-P3-A5Q5-01 United States Yes Yes No 5 40 150 Cryomold
+TCGA-P3-A5Q6 0 Sample Acquisition TCGA-P3-A5Q6-01 United States Yes Yes No 5 40 150 Cryomold
+TCGA-P3-A5QA 0 Sample Acquisition TCGA-P3-A5QA-01 United States Yes No No 5 90 100 Cryomold
+TCGA-P3-A5QE 0 Sample Acquisition TCGA-P3-A5QE-01 United States Yes No No 5 60 100 Cryomold
+TCGA-P3-A5QF 0 Sample Acquisition TCGA-P3-A5QF-01 United States Yes No No 15 60 100 Cryomold
+TCGA-P3-A6SW 14 Sample Acquisition TCGA-P3-A6SW-01 United States Yes Yes No 15 40 150 Cryomold
+TCGA-P3-A6SX -9 Sample Acquisition TCGA-P3-A6SX-01 United States Yes Yes No 10 50 150 Cryomold
+TCGA-P3-A6T0 1 Sample Acquisition TCGA-P3-A6T0-01 United States Yes Yes No 50 50 150 Cryomold
+TCGA-P3-A6T2 10 Sample Acquisition TCGA-P3-A6T2-01 United States Yes Yes No 5 30 150 Cryomold
+TCGA-P3-A6T3 -12 Sample Acquisition TCGA-P3-A6T3-01 United States Yes Yes No 10 40 150 Cryomold
+TCGA-P3-A6T4 -4 Sample Acquisition TCGA-P3-A6T4-01 United States Yes No No 5 80 150 Cryomold
+TCGA-P3-A6T5 8 Sample Acquisition TCGA-P3-A6T5-01 United States Yes Yes No 10 50 150 Cryomold
+TCGA-P3-A6T6 -9 Sample Acquisition TCGA-P3-A6T6-01 United States Yes Yes No 10 60 150 Cryomold
+TCGA-P3-A6T7 4 Sample Acquisition TCGA-P3-A6T7-01 United States Yes Yes No 10 50 150 Cryomold
+TCGA-P3-A6T8 9 Sample Acquisition TCGA-P3-A6T8-01 United States Yes Yes No 0 30 150 Cryomold
+TCGA-QK-A6IF 0 Sample Acquisition TCGA-QK-A6IF-01 United States Yes Yes Yes 0 40 90 Cryovial
+TCGA-QK-A6IG 0 Sample Acquisition TCGA-QK-A6IG-01 United States Yes No Yes 1 70 150 Cryovial
+TCGA-QK-A6IH 0 Sample Acquisition TCGA-QK-A6IH-01 United States Yes No Yes 1 65 100 Cryovial
+TCGA-QK-A6II 0 Sample Acquisition TCGA-QK-A6II-01 United States Yes Yes Yes 0 55 300 Cryovial
+TCGA-QK-A6IJ 0 Sample Acquisition TCGA-QK-A6IJ-01 United States Yes No Yes 0 65 90 Cryovial
+TCGA-QK-A6V9 0 Sample Acquisition TCGA-QK-A6V9-01 United States Yes No Yes 0 70 100 Cryovial
+TCGA-QK-A6VB 0 Sample Acquisition TCGA-QK-A6VB-01 United States Yes No Yes 5 75 500 Cryovial
+TCGA-QK-A6VC 0 Sample Acquisition TCGA-QK-A6VC-01 United States Yes No Yes 15 65 500 Cryovial
+TCGA-QK-A8Z7 0 Sample Acquisition TCGA-QK-A8Z7-01 United States Yes No Yes 10 65 300 Cryovial
+TCGA-QK-A8Z8 0 Sample Acquisition TCGA-QK-A8Z8-01 United States Yes No Yes 0 90 120 Cryovial
+TCGA-QK-A8Z9 0 Sample Acquisition TCGA-QK-A8Z9-01 United States Yes No Yes 0 70 300 Cryovial
+TCGA-QK-A8ZA 0 Sample Acquisition TCGA-QK-A8ZA-01 United States Yes No Yes 1 80 100 Cryovial
+TCGA-QK-A8ZB 0 Sample Acquisition TCGA-QK-A8ZB-01 United States Yes No Yes 1 70 200 Cryovial
+TCGA-QK-A64Z 0 Sample Acquisition TCGA-QK-A64Z-01 United States Yes No Yes 0 80 200 Cryomold
+TCGA-QK-A652 0 Sample Acquisition TCGA-QK-A652-01 United States Yes Yes Yes 0 30 300 Cryovial
+TCGA-QK-AA3J 0 Sample Acquisition TCGA-QK-AA3J-01 United States Yes No Yes 0 90 80 Cryovial
+TCGA-QK-AA3K 0 Sample Acquisition TCGA-QK-AA3K-01 United States Yes No Yes 0 95 200 Cryovial
+TCGA-RS-A6TO 0 Sample Acquisition TCGA-RS-A6TO-01 United States Yes No Yes 5 80 330 Cryomold
+TCGA-RS-A6TP 0 Sample Acquisition TCGA-RS-A6TP-01 United States Yes No Yes 5 70 270 Cryomold
+TCGA-T2-A6WX 31 Sample Acquisition TCGA-T2-A6WX-01 United States Yes No Yes 5 85 200 Cryomold
+TCGA-T2-A6WZ 57 Sample Acquisition TCGA-T2-A6WZ-01 United States Yes No Yes 0 60 200 Cryomold
+TCGA-T2-A6X0 33 Sample Acquisition TCGA-T2-A6X0-01 United States Yes No Yes 5 65 200 Cryomold
+TCGA-T2-A6X2 0 Sample Acquisition TCGA-T2-A6X2-01 United States Yes No Yes 0 65 200 Cryomold
+TCGA-T3-A92M 0 Sample Acquisition TCGA-T3-A92M-01 United States Yes No Yes 0 90 250 Cryovial
+TCGA-T3-A92N -2 Sample Acquisition TCGA-T3-A92N-01 United States Yes No Yes 0 80 130 Cryovial
+TCGA-TN-A7HI 2 Sample Acquisition TCGA-TN-A7HI-01 United States Yes No Yes 10 80 110 Cryomold
+TCGA-TN-A7HJ -12 Sample Acquisition TCGA-TN-A7HJ-01 United States Yes No Yes 5 95 210 Cryomold
+TCGA-TN-A7HL 1 Sample Acquisition TCGA-TN-A7HL-01 United States Yes No Yes 10 75 150 Cryomold
+TCGA-UF-A7J9 91 Sample Acquisition TCGA-UF-A7J9-01 Brazil Yes No Yes 10 60 63 Cryovial
+TCGA-UF-A7JA 123 Sample Acquisition TCGA-UF-A7JA-01 Brazil Yes No Yes 0 60 79 Cryovial
+TCGA-UF-A7JC 81 Sample Acquisition TCGA-UF-A7JC-01 Brazil Yes No Yes 0 90 264 Cryovial
+TCGA-UF-A7JD 154 Sample Acquisition TCGA-UF-A7JD-01 Brazil Yes No Yes 10 90 164 Cryovial
+TCGA-UF-A7JF 0 Sample Acquisition TCGA-UF-A7JF-01 Brazil Yes No Yes 0 80 74 Cryovial
+TCGA-UF-A7JH 54 Sample Acquisition TCGA-UF-A7JH-01 Brazil Yes No Yes 5 70 125 Cryovial
+TCGA-UF-A7JJ 24 Sample Acquisition TCGA-UF-A7JJ-01 Brazil Yes No Yes 0 70 199 Cryovial
+TCGA-UF-A7JK 85 Sample Acquisition TCGA-UF-A7JK-01 Brazil Yes No Yes 5 70 74 Cryovial
+TCGA-UF-A7JO 75 Sample Acquisition TCGA-UF-A7JO-01 Brazil Yes No Yes 0 70 50 Cryovial
+TCGA-UF-A7JS 21 Sample Acquisition TCGA-UF-A7JS-01 Brazil Yes No Yes 0 70 199 Cryovial
+TCGA-UF-A7JT 104 Sample Acquisition TCGA-UF-A7JT-01 Brazil Yes No Yes 0 80 191 Cryovial
+TCGA-UF-A7JV 0 Sample Acquisition TCGA-UF-A7JV-01 Brazil Yes No Yes 15 70 113 Cryovial
+TCGA-UF-A71A 82 Sample Acquisition TCGA-UF-A71A-01 Brazil Yes No Yes 0 60 227 Cryovial
+TCGA-UF-A71B 129 Sample Acquisition TCGA-UF-A71B-01 Brazil Yes No Yes 0 70 98 Cryovial
+TCGA-UF-A71D 97 Sample Acquisition TCGA-UF-A71D-01 Brazil Yes No Yes 0 90 166 Cryovial
+TCGA-UF-A71E 152 Sample Acquisition TCGA-UF-A71E-01 Brazil Yes No Yes 0 60 210 Cryovial
+TCGA-UF-A718 95 Sample Acquisition TCGA-UF-A718-01 Brazil Yes No Yes 0 90 158 Cryovial
+TCGA-UF-A719 84 Sample Acquisition TCGA-UF-A719-01 Brazil Yes No Yes 05 80 169 Cryovial
+TCGA-UP-A6WW 36 Sample Acquisition TCGA-UP-A6WW-01 United States Yes Yes Yes 10 60 210 Cryovial
+TCGA-WA-A7GZ 47 Sample Acquisition TCGA-WA-A7GZ-01 Germany Yes No No 0 70 70 Cryovial
+TCGA-WA-A7H4 24 Sample Acquisition TCGA-WA-A7H4-01 Germany Yes No No 0 65 146 Cryovial

data_timeline_status.txt

@@ -0,0 +1,1234 @@
+PATIENT_ID START_DATE STOP_DATE EVENT_TYPE STATUS CLINICAL_STAGE PATHOLOGIC_STAGE SYSTEM_VERSION CLINICAL_M CLINICAL_N CLINICAL_T PATHOLOGIC_M PATHOLOGIC_N PATHOLOGIC_T ANATOMIC_SITE TUMOR_STATUS PRIMARY_THERAPY_OUTCOME_SUCCESS VITAL_STATUS
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+TCGA-CV-7100 274 STATUS DECEASED 
+TCGA-CV-7101 160 STATUS DECEASED 
+TCGA-CV-7103 1591 STATUS DECEASED 
+TCGA-CV-7178 2166 STATUS DECEASED 
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+TCGA-CV-7248 521 STATUS DECEASED 
+TCGA-CV-7254 1459 STATUS DECEASED 
+TCGA-CV-7263 560 STATUS DECEASED 
+TCGA-CV-7406 1748 STATUS DECEASED 
+TCGA-CV-7407 1081 STATUS DECEASED 
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+TCGA-CV-7446 1093 STATUS DECEASED 
+TCGA-CV-7568 927 STATUS DECEASED 
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+TCGA-BA-A6DJ 407 STATUS DECEASED 
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+TCGA-CN-6997 988 STATUS DECEASED 
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+TCGA-CN-A63W 377 STATUS DECEASED 
+TCGA-CN-A498 773 STATUS DECEASED 
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+TCGA-CN-A642 82 STATUS DECEASED 
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+TCGA-CQ-5332 317 STATUS DECEASED 
+TCGA-CQ-5333 341 STATUS DECEASED 
+TCGA-CQ-5334 129 STATUS DECEASED 
+TCGA-CQ-6219 479 STATUS DECEASED 
+TCGA-CQ-6220 985 STATUS DECEASED 
+TCGA-CQ-6225 403 STATUS DECEASED 
+TCGA-CQ-6227 129 STATUS DECEASED 
+TCGA-CQ-6228 456 STATUS DECEASED 
+TCGA-CQ-A4CG 430 STATUS DECEASED 
+TCGA-CQ-A4CH 379 STATUS DECEASED 
+TCGA-CR-6471 1202 STATUS DECEASED 
+TCGA-CR-6474 564 STATUS DECEASED 
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+TCGA-CR-6493 282 STATUS DECEASED 
+TCGA-CR-7369 1090 STATUS DECEASED 
+TCGA-CR-7371 94 STATUS DECEASED 
+TCGA-CR-7377 279 STATUS DECEASED 
+TCGA-CR-7380 606 STATUS DECEASED 
+TCGA-CR-7383 521 STATUS DECEASED 
+TCGA-CR-7388 823 STATUS DECEASED 
+TCGA-CV-5431 522 STATUS DECEASED 
+TCGA-CV-5434 3314 STATUS DECEASED 
+TCGA-CV-5435 2319 STATUS DECEASED 
+TCGA-CV-5436 584 STATUS DECEASED 
+TCGA-CV-5439 546 STATUS DECEASED 
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+TCGA-CV-6441 292 STATUS DECEASED 
+TCGA-CV-6933 2741 STATUS DECEASED 
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+TCGA-CV-6936 166 STATUS DECEASED 
+TCGA-CV-6938 144 STATUS DECEASED 
+TCGA-CV-6940 804 STATUS DECEASED 
+TCGA-CV-6941 342 STATUS DECEASED 
+TCGA-CV-6948 1289 STATUS DECEASED 
+TCGA-CV-6950 459 STATUS DECEASED 
+TCGA-CV-6952 185 STATUS DECEASED 
+TCGA-CV-6953 1641 STATUS DECEASED 
+TCGA-CV-6954 2002 STATUS DECEASED 
+TCGA-CV-6956 217 STATUS DECEASED 
+TCGA-CV-6959 256 STATUS DECEASED 
+TCGA-CV-6960 862 STATUS DECEASED 
+TCGA-CV-6961 76 STATUS DECEASED 
+TCGA-CV-6962 126 STATUS DECEASED 
+TCGA-CV-7089 1972 STATUS DECEASED 
+TCGA-CV-7095 572 STATUS DECEASED 
+TCGA-CV-7099 243 STATUS DECEASED 
+TCGA-CV-7102 56 STATUS DECEASED 
+TCGA-CV-7104 393 STATUS DECEASED 
+TCGA-CV-7177 663 STATUS DECEASED 
+TCGA-CV-7250 2900 STATUS DECEASED 
+TCGA-CV-7252 151 STATUS DECEASED 
+TCGA-CV-7253 361 STATUS DECEASED 
+TCGA-CV-7255 64 STATUS DECEASED 
+TCGA-CV-7409 543 STATUS DECEASED 
+TCGA-CV-7413 294 STATUS DECEASED 
+TCGA-CV-7414 14 STATUS DECEASED 
+TCGA-CV-7418 789 STATUS DECEASED 
+TCGA-CV-7421 2 STATUS DECEASED 
+TCGA-CV-7422 1037 STATUS DECEASED 
+TCGA-CV-7427 4760 STATUS DECEASED 
+TCGA-CV-7429 107 STATUS DECEASED 
+TCGA-CV-7432 2570 STATUS DECEASED 
+TCGA-CV-7433 601 STATUS DECEASED 
+TCGA-CV-7434 218 STATUS DECEASED 
+TCGA-CV-7435 4680 STATUS DECEASED 
+TCGA-CV-7438 194 STATUS DECEASED 
+TCGA-CV-A6JD 182 STATUS DECEASED 
+TCGA-CV-A6JM 194 STATUS DECEASED 
+TCGA-CV-A6K2 317 STATUS DECEASED 
+TCGA-CV-A45Q 5152 STATUS DECEASED 
+TCGA-CV-A45T 4856 STATUS DECEASED 
+TCGA-CV-A45U 1079 STATUS DECEASED 
+TCGA-CV-A45V 32 STATUS DECEASED 
+TCGA-CV-A45W 1398 STATUS DECEASED 
+TCGA-CV-A45X 198 STATUS DECEASED 
+TCGA-CV-A45Y 2703 STATUS DECEASED 
+TCGA-CV-A45Z 1466 STATUS DECEASED 
+TCGA-CV-A460 1838 STATUS DECEASED 
+TCGA-CV-A461 2064 STATUS DECEASED 
+TCGA-CV-A463 23 STATUS DECEASED 
+TCGA-CV-A465 215 STATUS DECEASED 
+TCGA-CV-A468 464 STATUS DECEASED 
+TCGA-D6-6515 403 STATUS DECEASED 
+TCGA-D6-6826 348 STATUS DECEASED 
+TCGA-DQ-5625 1133 STATUS DECEASED 
+TCGA-DQ-5629 941 STATUS DECEASED 
+TCGA-DQ-5631 548 STATUS DECEASED 
+TCGA-DQ-7588 427 STATUS DECEASED 
+TCGA-F7-A622 359 STATUS DECEASED 
+TCGA-HD-7917 836 STATUS DECEASED 
+TCGA-HD-8224 446 STATUS DECEASED 
+TCGA-HD-8634 385 STATUS DECEASED 
+TCGA-HD-A634 130 STATUS DECEASED 
+TCGA-IQ-A61O 421 STATUS DECEASED 
+TCGA-KU-A6H8 327 STATUS DECEASED 
+TCGA-KU-A66S 406 STATUS DECEASED 
+TCGA-MZ-A6I9 489 STATUS DECEASED 
+TCGA-P3-A5Q6 480 STATUS DECEASED 
+TCGA-P3-A6T5 882 STATUS DECEASED 
+TCGA-P3-A6T6 395 STATUS DECEASED 
+TCGA-QK-A6IG 222 STATUS DECEASED 
+TCGA-QK-A6II 284 STATUS DECEASED 
+TCGA-QK-A8Z9 449 STATUS DECEASED 
+TCGA-QK-A8ZA 371 STATUS DECEASED 
+TCGA-QK-A64Z 641 STATUS DECEASED 
+TCGA-RS-A6TO 387 STATUS DECEASED 
+TCGA-T2-A6WZ 484 STATUS DECEASED 
+TCGA-T3-A92N 95 STATUS DECEASED 
+TCGA-UF-A7JC 546 STATUS DECEASED 
+TCGA-UF-A7JD 739 STATUS DECEASED 
+TCGA-UF-A7JS 680 STATUS DECEASED 
+TCGA-UF-A71E 1504 STATUS DECEASED 
+TCGA-WA-A7GZ 625 STATUS DECEASED 
+TCGA-CN-6020 98 STATUS Last Known Alive 
+TCGA-CQ-5327 1184 STATUS Last Known Alive 
+TCGA-CV-5431 176 STATUS Last Known Alive 
+TCGA-CV-5432 3930 STATUS Last Known Alive 
+TCGA-CV-5434 3295 STATUS Last Known Alive 
+TCGA-CV-5435 1704 STATUS Last Known Alive 
+TCGA-CV-5436 548 STATUS Last Known Alive 
+TCGA-CV-5439 501 STATUS Last Known Alive 
+TCGA-CV-5440 2732 STATUS Last Known Alive 
+TCGA-CV-5443 2567 STATUS Last Known Alive 
+TCGA-CV-5444 1969 STATUS Last Known Alive 
+TCGA-CV-5970 406 STATUS Last Known Alive 
+TCGA-CV-5971 540 STATUS Last Known Alive 
+TCGA-CV-5976 1478 STATUS Last Known Alive 
+TCGA-CV-5978 215 STATUS Last Known Alive 
+TCGA-CV-5979 1315 STATUS Last Known Alive 
+TCGA-CV-6003 1246 STATUS Last Known Alive 
+TCGA-CV-6433 405 STATUS Last Known Alive 
+TCGA-DQ-5624 1149 STATUS Last Known Alive 
+TCGA-DQ-5629 516 STATUS Last Known Alive 
+TCGA-DQ-5630 477 STATUS Last Known Alive 
+TCGA-DQ-5631 540 STATUS Last Known Alive 
+TCGA-4P-AA8J 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2a t4a mx n2c t2 
+TCGA-BA-4074 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n2c t3 m0 n2c t2 
+TCGA-BA-4076 0 STATUS Initial Diagnosis stage IVa 6th m0 n2c t3 nx tx 
+TCGA-BA-4078 0 STATUS Initial Diagnosis stage IVa 6th m0 n2a t2 
+TCGA-BA-5149 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t3 n2c t3 
+TCGA-BA-5151 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n0 t4a n0 t4a 
+TCGA-BA-5152 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n0 t4a 
+TCGA-BA-5153 0 STATUS Initial Diagnosis stage III 6th m0 n1 t2 nx t2 
+TCGA-BA-5555 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t2 n2c t3 
+TCGA-BA-5556 0 STATUS Initial Diagnosis stage II stage II 7th m0 n0 t2 n0 t2 
+TCGA-BA-5557 0 STATUS Initial Diagnosis stage IVa stage III 7th m0 n2 t2 n1 t1 
+TCGA-BA-5558 0 STATUS Initial Diagnosis stage IVa 6th m0 n1 t4a nx tx 
+TCGA-BA-5559 0 STATUS Initial Diagnosis stage IVa 6th m0 n2b t3 nx tx 
+TCGA-BA-6868 0 STATUS Initial Diagnosis stage IVb 7th m0 n3 t3 nx tx 
+TCGA-BA-6869 0 STATUS Initial Diagnosis stage III stage III 7th m0 n0 t3 n0 t3 
+TCGA-BA-6870 0 STATUS Initial Diagnosis stage IVc 7th m1 n2c t3 nx tx 
+TCGA-BA-6871 0 STATUS Initial Diagnosis stage IVa 7th m0 n2b t3 nx tx 
+TCGA-BA-6872 0 STATUS Initial Diagnosis stage IVa 6th m0 n2c t3 nx tx 
+TCGA-BA-6873 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t2 n2b t4a 
+TCGA-BA-7269 0 STATUS Initial Diagnosis stage III stage III 7th m0 n1 t2 n1 t2 
+TCGA-BA-A4IF 0 STATUS Initial Diagnosis stage IVa 7th m0 n0 t4 mx nx tx 
+TCGA-BA-A4IG 0 STATUS Initial Diagnosis stage IVa 7th m0 n2 t2 mx nx t1 
+TCGA-BA-A4IH 0 STATUS Initial Diagnosis stage IVa 7th m0 n2b t2 m0 n1 t2 
+TCGA-BA-A4II 0 STATUS Initial Diagnosis stage I stage II 7th m0 n0 t1 m0 n0 t2 
+TCGA-BA-A6D8 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t4a m0 n2c t4a 
+TCGA-BA-A6DA 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t4a m0 n2c t4a 
+TCGA-BA-A6DB 0 STATUS Initial Diagnosis stage II stage I 7th m0 n0 t2 m0 n0 t1 
+TCGA-BA-A6DD 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t4a m0 n2c t4a 
+TCGA-BA-A6DE 0 STATUS Initial Diagnosis stage III stage II 7th m0 n0 t3 m0 n0 t2 
+TCGA-BA-A6DF 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t4a m0 n0 t4a 
+TCGA-BA-A6DG 0 STATUS Initial Diagnosis stage IVa 7th m0 n2b t4a mx nx tx 
+TCGA-BA-A6DI 0 STATUS Initial Diagnosis stage III 7th m0 n0 t3 m0 nx tx 
+TCGA-BA-A6DJ 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t4 m0 n2c t4a 
+TCGA-BA-A6DL 0 STATUS Initial Diagnosis stage III 7th m0 n0 t3 m0 n0 t0 
+TCGA-BA-A8YP 0 STATUS Initial Diagnosis stage IVb stage IVb 7th m0 n3 t4 m0 n3 t4a 
+TCGA-BB-4217 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t4a m0 n2c t4a 
+TCGA-BB-4223 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t3 m0 n2b t2 
+TCGA-BB-4224 0 STATUS Initial Diagnosis stage III stage IVa 7th m0 n0 t3 n2b t2 
+TCGA-BB-4225 0 STATUS Initial Diagnosis stage IVa 7th m0 n2c t3 nx tx 
+TCGA-BB-4227 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t4a n2b t4a 
+TCGA-BB-4228 0 STATUS Initial Diagnosis stage II stage III 7th m0 n0 t2 nx t3 
+TCGA-BB-7861 0 STATUS Initial Diagnosis stage III stage III 7th m0 n1 tx n1 t1 
+TCGA-BB-7862 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t2 n2c t3 
+TCGA-BB-7863 0 STATUS Initial Diagnosis stage III stage III 7th m0 n0 t3 n0 t3 
+TCGA-BB-7864 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t3 n2c t2 
+TCGA-BB-7866 0 STATUS Initial Diagnosis stage III 7th m0 n1 t3 nx tx 
+TCGA-BB-7870 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t3 n0 t4a 
+TCGA-BB-7871 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2c t4a n2c t4a 
+TCGA-BB-7872 0 STATUS Initial Diagnosis stage IVa stage I 7th m0 n2c t2 n0 t1 
+TCGA-BB-8596 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n1 t4 mx nx t4a 
+TCGA-BB-8601 0 STATUS Initial Diagnosis stage II stage III 7th m0 n0 t2 mx n1 t3 
+TCGA-BB-A5HU 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t4 m0 n2b t4 
+TCGA-BB-A5HY 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t3 m0 n2b t3 
+TCGA-BB-A5HZ 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n1 t4 m0 n1 t4a 
+TCGA-BB-A6UM 0 STATUS Initial Diagnosis stage III stage III 7th mx n2b t2 mx n2 t1 
+TCGA-BB-A6UO 0 STATUS Initial Diagnosis stage IVa stage IVa 7th mx n2 t3 mx n2b t4a 
+TCGA-C9-A47Z 0 STATUS Initial Diagnosis stage III stage III 7th m0 n1 t2 m0 n1 t2 
+TCGA-C9-A480 0 STATUS Initial Diagnosis stage III stage III 7th m0 n0 t3 m0 n0 t3 
+TCGA-CN-4722 0 STATUS Initial Diagnosis stage II stage II 7th m0 n0 t2 n0 t2 
+TCGA-CN-4723 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n0 t4a n0 t4a 
+TCGA-CN-4725 0 STATUS Initial Diagnosis stage II stage II 7th m0 n0 t2 n0 t2 
+TCGA-CN-4726 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2 t3 n2b t3 
+TCGA-CN-4727 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n0 t4a n0 t4a 
+TCGA-CN-4728 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2 t2 n2b t3 
+TCGA-CN-4729 0 STATUS Initial Diagnosis stage IVa stage III 7th m0 n0 t4a n1 t2 
+TCGA-CN-4730 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t4a n1 t4a 
+TCGA-CN-4731 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2 t4a n2c t4a 
+TCGA-CN-4733 0 STATUS Initial Diagnosis stage I stage III 7th m0 n0 t1 n1 t1 
+TCGA-CN-4734 0 STATUS Initial Diagnosis stage II stage II 7th m0 n0 t2 n0 t2 
+TCGA-CN-4735 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n2b t3 n2b t3 
+TCGA-CN-4736 0 STATUS Initial Diagnosis stage II 7th m0 n0 t2 nx t1 
+TCGA-CN-4737 0 STATUS Initial Diagnosis stage II stage IVa 7th m0 n0 t2 n2b t2 
+TCGA-CN-4738 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n0 t4a 
+TCGA-CN-4739 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n0 t4a 
+TCGA-CN-4740 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n0 t4a 
+TCGA-CN-4741 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n0 t4a 
+TCGA-CN-4742 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n1 t4a m0 n2b t4a 
+TCGA-CN-5355 0 STATUS Initial Diagnosis stage IVa stage IVa 7th m0 n0 t4a n0 t4a 
+TCGA-CN-5356 0 STATUS Initial Diagnosis stage III stage III 7th m0 n0 t3 n0 t3 
+TCGA-CN-5358 0 STATUS Initial Diagnosis stage III stage II 7th m0 n1 t2 n0 t2 
+TCGA-CN-5359 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n1 t4a m0 n2b t4a 
+TCGA-CN-5360 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n0 t4a 
+TCGA-CN-5361 0 STATUS Initial Diagnosis stage IVa 6th nx tx m0 n2a t4a 
+TCGA-CN-5363 0 STATUS Initial Diagnosis stage IVb stage IVb 6th m0 n3 t4a m0 n3 t4a 
+TCGA-CN-5364 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n2c t4a m0 n2c t4a 
+TCGA-CN-5365 0 STATUS Initial Diagnosis stage IVc stage IVb 6th m1 n2 t1 n3 t2 
+TCGA-CN-5366 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n2c t4a m0 n2c t4a 
+TCGA-CN-5367 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n0 t4a m0 n2b t4a 
+TCGA-CN-5369 0 STATUS Initial Diagnosis stage IVa stage IVa 6th m0 n1 t4a m0 n0 t4a 
+TCGA-CN-5370 0 STATUS Initial Diagnosis stage II stage III 6th m0 n0 t2 m0 n1 t3 
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+TCGA-H7-A6C4 414 STATUS Last Follow Up 
+TCGA-H7-A6C5 642 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-H7-A76A 637 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-7229 1027 STATUS Last Follow Up With Tumor Progressive Disease Alive
+TCGA-HD-7753 866 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-7754 783 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-7831 667 STATUS Last Follow Up With Tumor Complete Remission/Response Alive
+TCGA-HD-7832 836 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-8314 670 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-8635 695 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-A4C1 11 STATUS Last Follow Up 
+TCGA-HD-A6HZ 111 STATUS Last Follow Up 
+TCGA-HD-A6I0 210 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-HD-A633 421 STATUS Last Follow Up With Tumor Complete Remission/Response Alive
+TCGA-HL-7533 1057 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-7630 485 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-7631 1172 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-7632 441 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-A6SG 579 STATUS Last Follow Up Complete Remission/Response Alive
+TCGA-IQ-A6SH 471 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-A61E 1147 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-A61G 360 STATUS Last Follow Up Progressive Disease Alive
+TCGA-IQ-A61H 1138 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-A61J 1021 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-IQ-A61L 416 STATUS Last Follow Up With Tumor Partial Remission/Response Alive
+TCGA-KU-A6H7 586 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-KU-A66T 552 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-MT-A7BN 469 STATUS Last Follow Up With Tumor Progressive Disease Alive
+TCGA-MT-A51W 437 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-MT-A51X 242 STATUS Last Follow Up Tumor Free Alive
+TCGA-MT-A67A 914 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-MT-A67D 56 STATUS Last Follow Up Alive
+TCGA-MT-A67F 384 STATUS Last Follow Up Tumor Free Stable Disease Alive
+TCGA-MT-A67G 190 STATUS Last Follow Up Tumor Free Alive
+TCGA-MZ-A7D7 547 STATUS Last Follow Up With Tumor Complete Remission/Response Alive
+TCGA-P3-A5Q5 910 STATUS Last Follow Up 
+TCGA-P3-A5QA 2182 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-P3-A5QE 1559 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-P3-A6SW 1120 STATUS Last Follow Up 
+TCGA-P3-A6T0 578 STATUS Last Follow Up 
+TCGA-P3-A6T2 2298 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-P3-A6T8 400 STATUS Last Follow Up 
+TCGA-QK-A6IF 704 STATUS Last Follow Up Complete Remission/Response Alive
+TCGA-QK-A6IH 653 STATUS Last Follow Up With Tumor Progressive Disease Alive
+TCGA-QK-A6IJ 387 STATUS Last Follow Up Alive
+TCGA-QK-A6V9 833 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-A6VB 641 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-A6VC 600 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-A8Z7 392 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-A8ZB 542 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-A652 645 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-AA3J 466 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-QK-AA3K 253 STATUS Last Follow Up Alive
+TCGA-RS-A6TP 516 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-T2-A6X0 216 STATUS Last Follow Up 
+TCGA-T2-A6X2 987 STATUS Last Follow Up 
+TCGA-T3-A92M 417 STATUS Last Follow Up With Tumor Alive
+TCGA-TN-A7HI 412 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-TN-A7HJ 403 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-TN-A7HL 619 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A7J9 1358 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A7JA 2265 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A7JF 1686 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A7JH 896 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A7JJ 549 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A71B 1506 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A71D 1461 STATUS Last Follow Up Complete Remission/Response Alive
+TCGA-UF-A718 1971 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UF-A719 1663 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-UP-A6WW 518 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive
+TCGA-WA-A7H4 443 STATUS Last Follow Up Tumor Free Complete Remission/Response Alive

data_timeline_treatment.txt

@@ -0,0 +1,776 @@
+PATIENT_ID START_DATE STOP_DATE EVENT_TYPE TREATMENT_TYPE TREATMENT_SUBTYPE AGENT NUMBER_OF_CYCLES PRESCRIBED_DOSE PRESCRIBED_DOSE_UNITS REGIMEN_NUMBER REGIMEN_INDICATION REGIMEN_INDICATION_NOTES MEASURE_OF_RESPONSE CLINICAL_TRIAL_DRUG_CLASSIFICATION ROUTE_OF_ADMINISTRATION ROUTE_OF_ADMINISTRATION-2 THERAPY_ONGOING TOTAL_DOSE TOTAL_DOSE_UNITS TX_ON_CLINICAL_TRIAL ANATOMIC_TREATMENT_SITE COURSE_NUMBER NUMBER_OF_FRACTIONS RADIATION_DOSAGE RADIATION_TREATMENT_ONGOING RADIATION_TYPE RADIATION_UNITS PHARM_REGIMEN STEM_CELL_TRANSPLANTATION STEM_CELL_TRANSPLANTATION_TYPE
+TCGA-BA-4074 45 97 Treatment Chemotherapy Carboplatin 1 Adjuvant No 
+TCGA-BA-4074 425 431 Treatment Radiation Therapy Radiation 1 Palliative 2 5 2000 No cgy 
+TCGA-BA-4074 45 97 Treatment Radiation Therapy Radiation 2 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-BA-4076 18 64 Treatment Chemotherapy Fluorouracil 2 1 Adjuvant No 
+TCGA-BA-4076 18 64 Treatment Chemotherapy Cisplatin 2 1 Adjuvant No 
+TCGA-BA-4076 18 64 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6800 No cgy 
+TCGA-BA-4078 51 95 Treatment Radiation Therapy Radiation 1 Adjuvant 1 No 
+TCGA-BA-5149 59 80 Treatment Chemotherapy Cisplatin 2 100 mg/m2 1 Adjuvant No 
+TCGA-BA-5149 59 102 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6000 No External Beam cgy 
+TCGA-BA-5151 55 69 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6600 No External Beam cgy 
+TCGA-BA-5153 41 91 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 No 
+TCGA-BA-5557 67 109 Treatment Chemotherapy Cisplatin 6 30 mg/m2 1 Adjuvant No 
+TCGA-BA-5557 67 109 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-BA-5558 78 140 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6480 No External Beam cgy 
+TCGA-BA-6868 13 48 Treatment Chemotherapy Carboplatin 6 2248 mg 1 Adjuvant IV No 1746 mg 
+TCGA-BA-6868 13 13 Treatment Chemotherapy Cetuximab 1 692 mg 1 Adjuvant IV No 519 mg 
+TCGA-BA-6868 69 118 Treatment Chemotherapy Cisplatin 3 540 mg 2 Adjuvant IV No 515 mg 
+TCGA-BA-6868 14 48 Treatment Chemotherapy Paclitaxel 6 1831 mg 1 Adjuvant IV No 1419 mg 
+TCGA-BA-6868 70 121 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 35 7000 No External Beam cgy 
+TCGA-BA-6869 96 137 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-BA-6870 60 152 Treatment Chemotherapy Cisplatin 1 Adjuvant No 
+TCGA-BA-6870 76 144 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6996 No External Beam cgy 
+TCGA-BA-6873 72 118 Treatment Chemotherapy Cisplatin 3 100 mg/m2 1 Progression IV No 640 mg 
+TCGA-BA-6873 72 122 Treatment Radiation Therapy Radiation 1 Progression Local Recurrence 1 4600 No External Beam cgy 
+TCGA-BA-7269 67 118 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-BA-A4IF 25 53 Treatment Chemotherapy Cisplatin complete response No Yes 
+TCGA-BA-A4IF 33 75 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 7000 No External cgy 
+TCGA-BA-A4IG 79 140 Treatment Chemotherapy Cetuximab complete response No No 
+TCGA-BA-A4IG 86 132 Treatment Radiation Therapy Radiation 1 complete response Regional Site 30 6000 No External cgy 
+TCGA-BA-A4IH 87 129 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BA-A4IH 88 136 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-BA-A6D8 112 154 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BA-A6D8 107 154 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-BA-A6D8 107 154 Treatment Radiation Therapy Radiation 2 complete response Regional Site 33 5610 No External cgy 
+TCGA-BA-A6DA 68 110 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BA-A6DA 68 112 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-BA-A6DD 96 163 Treatment Chemotherapy Cisplatin clinical progressive disease No No 
+TCGA-BA-A6DD 89 133 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 19 3800 No External cgy 
+TCGA-BA-A6DF 44 92 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 32 6400 No External cgy 
+TCGA-BA-A6DG 58 61 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 2 400 No External cgy 
+TCGA-BA-A6DI 18 53 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BA-A6DI 18 62 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 32 6400 No External cgy 
+TCGA-BA-A6DJ 105 140 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BA-A6DJ 104 160 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-BA-A6DJ 104 160 Treatment Radiation Therapy Radiation 2 complete response Regional Site 30 6000 No External cgy 
+TCGA-BA-A6DL 21 56 Treatment Chemotherapy Carboplatin complete response No Yes 
+TCGA-BA-A6DL 21 56 Treatment Chemotherapy Paclitaxel complete response No Yes 
+TCGA-BA-A6DL 21 56 Treatment Chemotherapy Lapatinib complete response No Yes 
+TCGA-BA-A8YP 39 100 Treatment Chemotherapy complete response No No 
+TCGA-BA-A8YP 49 102 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 31 6200 No External cgy 
+TCGA-BB-4217 115 121 Treatment Radiation Therapy Radiation 1 Adjuvant 1 No 
+TCGA-BB-4223 98 140 Treatment Chemotherapy Cisplatin 6 100 mg/m2 1 Adjuvant IV No 600 mg/m2 
+TCGA-BB-4223 94 135 Treatment Radiation Therapy Radiation 1 Adjuvant Regional Site 1 6000 No External Beam cgy 
+TCGA-BB-4223 136 140 Treatment Radiation Therapy Radiation 2 Adjuvant Primary Tumor Field 2 600 No External Beam cgy 
+TCGA-BB-4224 182 202 Treatment Chemotherapy Cisplatin 2 75 mg/m2 1 Palliative IV No 150 mg/m2 
+TCGA-BB-4224 229 243 Treatment Chemotherapy Gemcitabine 2 mg/m2 2 Palliative IV No mg/m2 
+TCGA-BB-4224 2786 2799 Treatment Chemotherapy Oxaliplatin 2 mg/m2 2 Palliative IV No mg/m2 
+TCGA-BB-4224 182 202 Treatment Chemotherapy Docetaxel 2 75 mg/m2 1 Palliative IV No 150 mg/m2 
+TCGA-BB-4224 30 69 Treatment Radiation Therapy Radiation 1 Regional Site 5580 No External Beam cgy 
+TCGA-BB-4228 26 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 1 600 No cgy 
+TCGA-BB-7861 43 71 Treatment Chemotherapy complete response No No 
+TCGA-BB-7861 43 71 Treatment Radiation Therapy Radiation 1 complete response No 
+TCGA-BB-7862 92 145 Treatment Radiation Therapy Radiation 1 complete response No 
+TCGA-BB-7864 136 179 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BB-7864 136 179 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000.00 No External cgy 
+TCGA-BB-7866 71 116 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BB-7866 70 116 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 7000.00 No External gy 
+TCGA-BB-7870 64 119 Treatment Radiation Therapy Radiation 1 complete response 6000 No cgy 
+TCGA-BB-7871 143 185 Treatment Radiation Therapy Radiation 1 complete response No 
+TCGA-BB-7872 112 154 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BB-7872 112 154 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6600.00 No External cgy 
+TCGA-BB-A5HU 69 97 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BB-A5HU 68 110 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6600.00 No External cgy 
+TCGA-BB-A5HY 84 121 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-BB-A5HY 83 127 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 182 No External gy 
+TCGA-BB-A5HY 275 281 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Distant Recurrence 5 2500 No External cgy 
+TCGA-BB-A5HZ 94 136 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6300 No External cgy 
+TCGA-BB-A6UM 150 181 Treatment Chemotherapy complete response No No 
+TCGA-BB-A6UM 150 181 Treatment Radiation Therapy Radiation 1 complete response No 
+TCGA-BB-A6UO 105 150 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6600 No External cgy 
+TCGA-CN-4726 90 94 Treatment Chemotherapy Cisplatin 1 100 mg/m2/wk 1 Recurrence IV No 
+TCGA-CN-4726 90 94 Treatment Radiation Therapy Radiation 1 Recurrence Regional Site 2 5 1100 No External Beam cgy 
+TCGA-CN-4727 83 143 Treatment Chemotherapy Cisplatin mg/m2/wk 1 Adjuvant IV No mg/m2/wk 
+TCGA-CN-4727 94 143 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 No External Beam cgy 
+TCGA-CN-4728 44 87 Treatment Chemotherapy Panitumumab 7 2.5 mg/kg 1 Adjuvant IV No mg/kg 
+TCGA-CN-4728 44 87 Treatment Chemotherapy Cisplatin 7 30 mg/m2/wk 1 Adjuvant IV No 
+TCGA-CN-4728 44 87 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-4731 273 301 Treatment Chemotherapy Cetuximab mg/m2/wk 1 Recurrence IV No mg/m2/wk 
+TCGA-CN-4731 546 560 Treatment Chemotherapy Cetuximab 3 100 mg/ml 1 Recurrence IV No 300 mg/ml 
+TCGA-CN-4731 827 869 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-CN-4731 937 958 Treatment Chemotherapy Docetaxel clinical progressive disease No Yes 
+TCGA-CN-4731 273 323 Treatment Radiation Therapy Radiation 1 Recurrence Local Recurrence 2 35 7000 No External Beam cgy 
+TCGA-CN-4731 538 562 Treatment Radiation Therapy Radiation 2 Recurrence Regional Site 3 5 4400 No Other cgy 
+TCGA-CN-4734 73 115 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 5400 No External Beam cgy 
+TCGA-CN-4735 46 88 Treatment Chemotherapy Panitumumab 2.5 mg/kg 1 Adjuvant IV No 
+TCGA-CN-4735 46 88 Treatment Chemotherapy Cisplatin 3 30 mg/m2/wk 1 Adjuvant IV No 
+TCGA-CN-4735 46 88 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-4736 262 322 Treatment Chemotherapy Cisplatin mg/m2 1 Recurrence IV No mg/m2 
+TCGA-CN-4736 269 322 Treatment Radiation Therapy Radiation 1 Recurrence Regional Site 2 35 7000 No External Beam cgy 
+TCGA-CN-4737 43 85 Treatment Chemotherapy Cisplatin mg/ml 1 Adjuvant IV No 50 mg/ml 
+TCGA-CN-4737 43 85 Treatment Chemotherapy Panitumumab mg/ml 1 Adjuvant IV No 100 mg/ml 
+TCGA-CN-4737 43 85 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-4738 251 280 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 3200 No External Beam cgy 
+TCGA-CN-4739 115 161 Treatment Chemotherapy Carboplatin auc Adjuvant IV No auc 
+TCGA-CN-4739 115 161 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 31 6200 No External Beam cgy 
+TCGA-CN-4740 260 276 Treatment Chemotherapy Cetuximab mg/ml 1 Recurrence IV No mg/ml 
+TCGA-CN-4740 757 791 Treatment Chemotherapy Everolimus 1 mg/ml 1 Recurrence IV No mg/ml 
+TCGA-CN-4740 266 276 Treatment Radiation Therapy Radiation 1 Recurrence Regional Site 2 5 4400 No Other cgy 
+TCGA-CN-4740 98 160 Treatment Radiation Therapy Radiation 2 Adjuvant Primary Tumor Field 1 36 6480 No External Beam cgy 
+TCGA-CN-4741 103 163 Treatment Chemotherapy Cisplatin mg 1 Adjuvant IV No mg 
+TCGA-CN-4741 1771 1778 Treatment Immunotherapy Cetuximab complete response No No 
+TCGA-CN-4741 103 163 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6600 No External Beam cgy 
+TCGA-CN-4741 1771 1780 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5 4400 No External cgy 
+TCGA-CN-4742 168 237 Treatment Chemotherapy Cisplatin auc Adjuvant IV No auc 
+TCGA-CN-4742 165 237 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 41 7380 No External Beam cgy 
+TCGA-CN-5358 223 Treatment Chemotherapy Carboplatin auc 2 Recurrence IV Yes auc 
+TCGA-CN-5358 202 Treatment Chemotherapy Cisplatin auc 1 Recurrence IV Yes auc 
+TCGA-CN-5358 202 Treatment Radiation Therapy Radiation 1 Recurrence Regional Site 2 Yes External Beam cgy 
+TCGA-CN-5359 54 79 Treatment Chemotherapy Cisplatin 10 mg/ml 1 Adjuvant IV No 80 mg/ml 
+TCGA-CN-5359 54 79 Treatment Chemotherapy Panitumumab 20 mg/ml 1 Adjuvant IV No 160 mg/ml 
+TCGA-CN-5359 53 96 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-5360 80 125 Treatment Chemotherapy Cisplatin 3 mg 1 Adjuvant IV No mg 
+TCGA-CN-5360 80 122 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-5364 231 303 Treatment Chemotherapy Carboplatin mg 1 Adjuvant IV No mg 
+TCGA-CN-5364 231 303 Treatment Chemotherapy Paclitaxel mg 1 Adjuvant IV No mg 
+TCGA-CN-5364 231 289 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 35 6640 No External Beam cgy 
+TCGA-CN-5366 86 147 Treatment Chemotherapy mg 1 Adjuvant IV No mg 
+TCGA-CN-5366 94 151 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 5500 No External Beam cgy 
+TCGA-CN-5367 88 139 Treatment Chemotherapy Cisplatin mg 1 Adjuvant IV No mg 
+TCGA-CN-5367 83 139 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6000 No External Beam cgy 
+TCGA-CN-5370 142 183 Treatment Chemotherapy Cisplatin 3 mg/ml 1 Recurrence IV No mg/ml 
+TCGA-CN-5370 142 183 Treatment Chemotherapy Cisplatin 3 mg/ml 3 Recurrence IV No mg/ml 
+TCGA-CN-5370 142 183 Treatment Chemotherapy Cisplatin 3 mg/ml 2 Recurrence IV No mg/ml 
+TCGA-CN-5370 144 199 Treatment Radiation Therapy Radiation 1 Recurrence Primary Tumor Field 2 34 6800 No External Beam cgy 
+TCGA-CN-5373 66 109 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-5374 112 182 Treatment Chemotherapy Cisplatin mg 1 Adjuvant INTRAVESICAL No mg 
+TCGA-CN-5374 116 187 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 34 7200 No External Beam cgy 
+TCGA-CN-6010 50 70 Treatment Chemotherapy Cisplatin 2 10 mg/ml 1 Adjuvant IV No 10 mg/ml 
+TCGA-CN-6010 47 98 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-6011 109 159 Treatment Chemotherapy Cisplatin mg/ml 1 Adjuvant IV No mg/ml 
+TCGA-CN-6011 102 157 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CN-6012 157 200 Treatment Chemotherapy Cisplatin mg/ml 1 Adjuvant IV No mg/ml 
+TCGA-CN-6012 157 207 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 No External Beam cgy 
+TCGA-CN-6013 103 148 Treatment Chemotherapy Cisplatin 3 100 mg/m2 1 Adjuvant IV No 100 mg/m2 
+TCGA-CN-6013 103 148 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CN-6016 92 141 Treatment Chemotherapy Carboplatin 2 auc 1 Adjuvant IV No 2 auc 
+TCGA-CN-6016 93 156 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 39 7020 No External Beam cgy 
+TCGA-CN-6017 103 110 Treatment Chemotherapy Carboplatin 50 mg/ml 1 Adjuvant IV No 50 mg/ml 
+TCGA-CN-6017 75 96 Treatment Chemotherapy Cisplatin 10 mg/ml 1 Adjuvant IV No 10 mg/ml 
+TCGA-CN-6017 75 117 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CN-6019 56 84 Treatment Chemotherapy Cisplatin 10 mg/ml 1 Adjuvant IV No 10 mg/ml 
+TCGA-CN-6019 56 91 Treatment Chemotherapy Panitumumab 20 mg/ml 1 Adjuvant IV No 20 mg/ml 
+TCGA-CN-6019 56 97 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-6020 101 140 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CN-6022 166 185 Treatment Radiation Therapy Radiation 1 Progression Regional Site 2 10 1800 No External Beam cgy 
+TCGA-CN-6023 49 99 Treatment Chemotherapy Cetuximab mg/ml 1 Adjuvant IV No mg/ml 
+TCGA-CN-6023 49 99 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 35 6300 No External Beam cgy 
+TCGA-CN-6989 73 114 Treatment Chemotherapy Carboplatin 4 50 mg/ml 1 Adjuvant IV No 200 mg/ml 
+TCGA-CN-6989 791 855 Treatment Chemotherapy Gemcitabine clinical progressive disease No No 
+TCGA-CN-6989 889 917 Treatment Chemotherapy Methotrexate clinical progressive disease No No 
+TCGA-CN-6989 72 116 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 32 6400 No External Beam cgy 
+TCGA-CN-6992 71 Treatment Chemotherapy Cisplatin 3 10 mg/ml 1 Adjuvant IV Yes 30 mg/ml 
+TCGA-CN-6992 70 140 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CN-6996 70 Treatment Chemotherapy Cisplatin 3 10 mg/ml 1 Adjuvant IV Yes 30 mg/ml 
+TCGA-CN-6996 378 378 Treatment Targeted Molecular Therapy Capecitabine clinical progressive disease No Yes 
+TCGA-CN-6996 378 378 Treatment Targeted Molecular Therapy Vorinostat clinical progressive disease No Yes 
+TCGA-CN-6996 418 Treatment Vaccine Vaccine Nos clinical progressive disease Yes Yes 
+TCGA-CN-6996 71 119 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CN-6997 59 101 Treatment Chemotherapy Cisplatin 3 mg/ml 1 Adjuvant IV No mg/ml 
+TCGA-CN-6997 363 Treatment Chemotherapy Cetuximab Yes No 
+TCGA-CN-6997 70 113 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6600 No External Beam cgy 
+TCGA-CN-6998 64 131 Treatment Chemotherapy Cisplatin clinical progressive disease No No 
+TCGA-CN-6998 63 141 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 38 6840 No External cgy 
+TCGA-CN-A498 59 101 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CN-A498 480 487 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-CN-A498 674 723 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-CN-A498 744 751 Treatment Chemotherapy Carboplatin clinical progressive disease No No 
+TCGA-CN-A498 744 751 Treatment Chemotherapy Paclitaxel clinical progressive disease No No 
+TCGA-CN-A498 51 107 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 6440 No External cgy 
+TCGA-CN-A498 480 493 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Regional Site 5 44 No External gy 
+TCGA-CN-A49A 76 126 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CN-A49A 76 128 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6600 No External cgy 
+TCGA-CN-A49A 365 365 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Distant Recurrence 1 1500 No External cgy 
+TCGA-CN-A49B 161 213 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6600 No External cgy 
+TCGA-CN-A49C 26 78 Treatment Chemotherapy Cetuximab complete response No No 
+TCGA-CN-A49C 26 78 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 34 7300 No External cgy 
+TCGA-CN-A63T 64 64 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-CN-A63T 64 72 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 5 9 No External gy 
+TCGA-CN-A63U 36 86 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 60 No External gy 
+TCGA-CN-A63W 69 138 Treatment Chemotherapy Panitumumab complete response No Yes 
+TCGA-CN-A63W 69 138 Treatment Chemotherapy Cisplatin complete response No Yes 
+TCGA-CN-A63W 69 138 Treatment Chemotherapy Carboplatin complete response No Yes 
+TCGA-CN-A63W 69 145 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-CN-A641 187 239 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-CN-A641 185 239 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CN-A6UY 59 106 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CN-A6UY 59 101 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6900 No External cgy 
+TCGA-CN-A6V1 13 34 Treatment Immunotherapy Cetuximab complete response No Yes 
+TCGA-CN-A6V3 130 151 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-CN-A6V3 130 178 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CN-A6V6 74 116 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-CN-A6V6 74 119 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CN-A6V7 83 104 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-CN-A6V7 83 132 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 7000 No External cgy 
+TCGA-CQ-5323 47 83 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 25 5000 No External Beam cgy 
+TCGA-CQ-5325 244 276 Treatment Radiation Therapy Radiation 1 Recurrence Primary Tumor Field 1 25 6000 No External Beam cgy 
+TCGA-CQ-5326 64 73 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 8 1696 No External Beam cgy 
+TCGA-CQ-5327 57 57 Treatment Chemotherapy Cisplatin 1 150 mg 1 Adjuvant IV No 150 mg 
+TCGA-CQ-5327 54 99 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CQ-5330 57 88 Treatment Chemotherapy 1 Adjuvant IV No 
+TCGA-CQ-5330 57 88 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CQ-5333 223 244 Treatment Radiation Therapy Radiation 1 Palliative Primary Tumor Field 1 3 2400 No External Beam cgy 
+TCGA-CQ-5334 55 69 Treatment Radiation Therapy Radiation 1 Palliative Primary Tumor Field 1 10 2508 No External Beam cgy 
+TCGA-CQ-6218 90 121 Treatment Chemotherapy Cisplatin 2 260 mg 1 Adjuvant IV No 260 mg 
+TCGA-CQ-6218 90 129 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CQ-6219 286 324 Treatment Radiation Therapy Radiation 1 Recurrence Local Recurrence 1 35 7000 No External Beam cgy 
+TCGA-CQ-6224 61 81 Treatment Chemotherapy Cisplatin 2 170 mg 1 Adjuvant IV No 340 mg 
+TCGA-CQ-6224 61 103 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CQ-6225 49 91 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 18 4320 No External Beam cgy 
+TCGA-CQ-6228 315 319 Treatment Radiation Therapy Radiation 1 Recurrence Distant Recurrence 2 5 2000 No External Beam cgy 
+TCGA-CQ-6228 154 186 Treatment Radiation Therapy Radiation 2 Adjuvant Primary Tumor Field 1 25 6000 No External Beam cgy 
+TCGA-CQ-7064 116 162 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CQ-7065 249 291 Treatment Chemotherapy Cisplatin 3 197 mg 1 Recurrence IV No 477 mg 
+TCGA-CQ-7065 248 294 Treatment Radiation Therapy Radiation 1 Recurrence Primary Tumor Field 1 35 7000 No External Beam cgy 
+TCGA-CQ-7068 1248 1302 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 35 7000 No External cgy 
+TCGA-CQ-7071 107 155 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CQ-7072 116 158 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-CQ-A4CD 156 204 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CQ-A4CH 120 148 Treatment Chemotherapy Cisplatin partial response No No 
+TCGA-CQ-A4CH 119 163 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CQ-A4CI 118 163 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-CR-5243 16 72 Treatment Chemotherapy Carboplatin 9 340 mg 1 Other, Specify In Notes IV No 
+TCGA-CR-5243 90 139 Treatment Chemotherapy Carboplatin 7 178 mg 2 Other, Specify In Notes IV No 
+TCGA-CR-5243 91 139 Treatment Chemotherapy Paclitaxel 7 69 mg 2 Other, Specify In Notes IV No 
+TCGA-CR-5243 16 72 Treatment Chemotherapy Paclitaxel 9 138 mg 1 Other, Specify In Notes IV No 
+TCGA-CR-5243 90 139 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 33 5610 No External Beam cgy 
+TCGA-CR-5243 90 139 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-5247 19 80 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-5247 19 80 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-5247 21 71 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 33 5610 No External Beam cgy 
+TCGA-CR-5247 21 71 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-5247 21 71 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-5248 42 84 Treatment Chemotherapy Oxaliplatin No Yes 
+TCGA-CR-5248 42 84 Treatment Chemotherapy Pemetrexed No Yes 
+TCGA-CR-5248 137 179 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-5248 137 179 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-5248 1124 1152 Treatment Chemotherapy Bevacizumab clinical progressive disease No Yes 
+TCGA-CR-5248 1124 1152 Treatment Chemotherapy Docetaxel clinical progressive disease No Yes 
+TCGA-CR-5248 1124 1152 Treatment Chemotherapy Cisplatin clinical progressive disease No Yes 
+TCGA-CR-5248 1194 1208 Treatment Immunotherapy Cixutumumab No Yes 
+TCGA-CR-5248 137 183 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-5248 137 183 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-5249 102 140 Treatment Chemotherapy Cetuximab mg 1 Adjuvant IV No 
+TCGA-CR-5249 107 140 Treatment Radiation Therapy Radiation 1 Adjuvant Regional Site 1 30 6000 No External Beam cgy 
+TCGA-CR-5249 107 140 Treatment Radiation Therapy Radiation 2 Adjuvant Regional Site 1 30 5700 No External Beam cgy 
+TCGA-CR-5249 107 140 Treatment Radiation Therapy Radiation 3 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CR-5250 57 136 Treatment Chemotherapy Cisplatin 232 mg 1 Other, Specify In Notes IV No 
+TCGA-CR-5250 56 113 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 30 5400 No External Beam cgy 
+TCGA-CR-5250 56 113 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Primary Tumor Field 1 38 6840 No External Beam cgy 
+TCGA-CR-6467 75 118 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 5400 No External Beam cgy 
+TCGA-CR-6467 75 118 Treatment Radiation Therapy Radiation 2 Adjuvant Regional Site 1 30 6000 No External Beam cgy 
+TCGA-CR-6470 85 113 Treatment Chemotherapy Paclitaxel 5 221 mg 1 Adjuvant IV No 1105 mg 
+TCGA-CR-6470 85 113 Treatment Chemotherapy Carboplatin 5 70 mg 1 Adjuvant IV No 350 mg 
+TCGA-CR-6470 79 115 Treatment Radiation Therapy Radiation 1 Adjuvant Regional Site 1 27 5130 No External Beam cgy 
+TCGA-CR-6470 79 115 Treatment Radiation Therapy Radiation 2 Adjuvant Regional Site 1 27 5400 No External Beam cgy 
+TCGA-CR-6470 79 115 Treatment Radiation Therapy Radiation 3 Adjuvant Primary Tumor Field 1 27 5400 No External Beam cgy 
+TCGA-CR-6471 1052 1052 Treatment Chemotherapy Cetuximab 1 400 mg/m2 3 Palliative IV No 
+TCGA-CR-6471 548 595 Treatment Chemotherapy Paclitaxel 8 60 mg/m2 1 Recurrence IV No 
+TCGA-CR-6471 618 646 Treatment Chemotherapy Carboplatin 5 1.5 auc 2 Recurrence IV No 
+TCGA-CR-6471 1108 1129 Treatment Chemotherapy Docetaxel 4 40 mg/m2 5 Palliative IV No 
+TCGA-CR-6471 548 595 Treatment Chemotherapy Carboplatin 8 2 auc 1 Recurrence IV No 
+TCGA-CR-6471 618 646 Treatment Chemotherapy Paclitaxel 5 35 mg/m2 2 Recurrence IV No 
+TCGA-CR-6471 1059 1087 Treatment Chemotherapy Methotrexate 5 30 mg/m2 4 Palliative IV No 
+TCGA-CR-6471 77 114 Treatment Radiation Therapy Radiation 1 Adjuvant Regional Site 1 27 5130 No External Beam cgy 
+TCGA-CR-6471 614 646 Treatment Radiation Therapy Radiation 2 Recurrence Regional Site 2 50 6250 No External Beam cgy 
+TCGA-CR-6471 77 114 Treatment Radiation Therapy Radiation 3 Adjuvant Primary Tumor Field 1 27 5400 No External Beam cgy 
+TCGA-CR-6471 614 646 Treatment Radiation Therapy Radiation 4 Recurrence Primary Tumor Field 2 50 6250 No External Beam cgy 
+TCGA-CR-6471 1081 1081 Treatment Radiation Therapy Radiation 5 Palliative Distant Recurrence 4 No Other cgy 
+TCGA-CR-6471 77 114 Treatment Radiation Therapy Radiation 6 Adjuvant Regional Site 1 27 5400 No External Beam cgy 
+TCGA-CR-6471 839 Treatment Radiation Therapy Radiation 7 Recurrence Regional Site 3 No External Beam cgy 
+TCGA-CR-6472 109 123 Treatment Chemotherapy Carboplatin 3 1 auc 2 Other, Specify In Notes IV No 
+TCGA-CR-6472 109 123 Treatment Chemotherapy Paclitaxel 3 30 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-6472 28 84 Treatment Chemotherapy Paclitaxel 9 60 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6472 28 84 Treatment Chemotherapy Carboplatin 9 2 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-6472 109 154 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-6472 109 154 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 33 5610 No External Beam cgy 
+TCGA-CR-6472 109 154 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-6473 47 94 Treatment Chemotherapy Paclitaxel 3 30 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-6473 19 40 Treatment Chemotherapy Paclitaxel 4 60 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6473 19 40 Treatment Chemotherapy Carboplatin 4 2 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-6473 47 94 Treatment Chemotherapy Carboplatin 2 1 auc 2 Other, Specify In Notes IV No 
+TCGA-CR-6473 45 94 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 33 5610 No External Beam cgy 
+TCGA-CR-6473 45 94 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-6473 45 94 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-6474 108 150 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CR-6477 77 84 Treatment Chemotherapy Paclitaxel 2 30 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-6477 10 66 Treatment Chemotherapy Carboplatin 8 2 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-6477 10 66 Treatment Chemotherapy Paclitaxel 8 60 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6477 77 84 Treatment Chemotherapy Carboplatin 2 1 auc 2 Other, Specify In Notes IV No 
+TCGA-CR-6477 78 123 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 32 6720 No External Beam cgy 
+TCGA-CR-6477 78 123 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 24 5040 No External Beam cgy 
+TCGA-CR-6477 78 123 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Primary Tumor Field 1 24 5040 No External Beam cgy 
+TCGA-CR-6478 125 162 Treatment Chemotherapy Paclitaxel 5 30 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-6478 125 162 Treatment Chemotherapy Carboplatin 5 1 auc 2 Other, Specify In Notes IV No 
+TCGA-CR-6478 44 107 Treatment Chemotherapy Paclitaxel 9 60 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6478 44 107 Treatment Chemotherapy Carboplatin 9 2 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-6478 125 178 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 27 5400 No External Beam cgy 
+TCGA-CR-6478 125 178 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 3 1890 No External Beam cgy 
+TCGA-CR-6478 125 178 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Primary Tumor Field 1 24 5040 No External Beam cgy 
+TCGA-CR-6480 27 85 Treatment Chemotherapy Cisplatin 3 75 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6480 27 85 Treatment Chemotherapy Cetuximab 3 900 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6480 27 85 Treatment Chemotherapy Paclitaxel 3 270 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6480 103 145 Treatment Chemotherapy Cetuximab 7 250 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-6480 103 152 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 27 5400 No External Beam cgy 
+TCGA-CR-6480 103 152 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 27 5130 No External Beam cgy 
+TCGA-CR-6480 103 152 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 35 7000 No External Beam cgy 
+TCGA-CR-6481 31 73 Treatment Chemotherapy Paclitaxel 5 30 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6481 31 73 Treatment Chemotherapy Carboplatin 5 1 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-6481 29 74 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-6481 29 74 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 24 5040 No External Beam cgy 
+TCGA-CR-6481 29 74 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-6482 74 74 Treatment Chemotherapy Paclitaxel 1 90 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6482 158 193 Treatment Chemotherapy Paclitaxel 6 30 mg/m2 3 Other, Specify In Notes IV No 
+TCGA-CR-6482 74 74 Treatment Chemotherapy Cetuximab 1 400 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6482 158 193 Treatment Chemotherapy Carboplatin 6 1 auc 3 Other, Specify In Notes IV No 
+TCGA-CR-6482 88 137 Treatment Chemotherapy Paclitaxel 8 60 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-6482 74 74 Treatment Chemotherapy Cisplatin 1 75 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6482 88 137 Treatment Chemotherapy Carboplatin 8 2 auc 2 Other, Specify In Notes IV No 
+TCGA-CR-6482 154 198 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-6482 154 198 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 24 5040 No External Beam cgy 
+TCGA-CR-6482 154 198 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-6484 109 144 Treatment Chemotherapy Paclitaxel 6 30 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-6484 109 144 Treatment Chemotherapy Carboplatin 6 1 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-6484 109 154 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CR-6484 109 154 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 25 5000 No External Beam cgy 
+TCGA-CR-6484 109 154 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 33 6600 No External Beam cgy 
+TCGA-CR-6491 191 201 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-6491 191 201 Treatment Chemotherapy Docetaxel complete response No No 
+TCGA-CR-6491 191 201 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field No External 
+TCGA-CR-6492 114 145 Treatment Radiation Therapy Radiation 1 Adjuvant 1 No External Beam 
+TCGA-CR-6493 100 150 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-6493 100 150 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-6493 100 150 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 7000 No External cgy 
+TCGA-CR-7365 140 192 Treatment Chemotherapy 1 Adjuvant No 
+TCGA-CR-7365 140 192 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 No External Beam 
+TCGA-CR-7367 90 98 Treatment Chemotherapy Paclitaxel No No 
+TCGA-CR-7367 90 98 Treatment Chemotherapy Carboplatin No No 
+TCGA-CR-7367 95 132 Treatment Radiation Therapy Radiation 1 Adjuvant Regional Site 1 27 5130 No External Beam cgy 
+TCGA-CR-7367 95 132 Treatment Radiation Therapy Radiation 2 Adjuvant Regional Site 1 27 5400 No External Beam cgy 
+TCGA-CR-7367 95 132 Treatment Radiation Therapy Radiation 3 Adjuvant Primary Tumor Field 1 27 5400 No External Beam cgy 
+TCGA-CR-7370 28 80 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 28 5400 No External Beam cgy 
+TCGA-CR-7373 96 138 Treatment Chemotherapy Cisplatin 1 Adjuvant IV No 
+TCGA-CR-7373 96 138 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 No External Beam 
+TCGA-CR-7379 126 162 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 25 5000 No External Beam cgy 
+TCGA-CR-7379 126 169 Treatment Radiation Therapy Radiation 2 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-CR-7380 92 153 Treatment Chemotherapy 1 Adjuvant IV No 
+TCGA-CR-7380 100 150 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 33 6600 No External Beam cgy 
+TCGA-CR-7380 100 140 Treatment Radiation Therapy Radiation 2 Adjuvant Primary Tumor Field 1 25 5000 No External Beam cgy 
+TCGA-CR-7383 462 483 Treatment Chemotherapy Paclitaxel partial response No No 
+TCGA-CR-7383 462 483 Treatment Chemotherapy Carboplatin partial response No No 
+TCGA-CR-7385 29 87 Treatment Chemotherapy 1 Adjuvant IV No 
+TCGA-CR-7385 29 87 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 No External Beam 
+TCGA-CR-7386 97 132 Treatment Chemotherapy Paclitaxel 6 30 mg/m2 1 Adjuvant IV No 
+TCGA-CR-7386 97 132 Treatment Chemotherapy Carboplatin 6 1 auc 1 Adjuvant IV No 
+TCGA-CR-7386 96 135 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 29 5800 No External Beam cgy 
+TCGA-CR-7386 96 135 Treatment Radiation Therapy Radiation 2 Adjuvant Regional Site 1 29 4390 No External Beam cgy 
+TCGA-CR-7388 65 93 Treatment Chemotherapy Carboplatin 5 2 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-7388 114 121 Treatment Chemotherapy Paclitaxel 2 30 mg/m2 2 Other, Specify In Notes IV No 
+TCGA-CR-7388 705 733 Treatment Chemotherapy Cetuximab 3 Palliative IV No 
+TCGA-CR-7388 114 121 Treatment Chemotherapy Carboplatin 2 1 auc 2 Other, Specify In Notes IV No 
+TCGA-CR-7388 65 93 Treatment Chemotherapy Paclitaxel 5 60 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-7388 110 148 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 21 3570 No External Beam cgy 
+TCGA-CR-7388 110 148 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Primary Tumor Field 1 21 4410 No External Beam cgy 
+TCGA-CR-7388 110 148 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Regional Site 1 21 4410 No External Beam cgy 
+TCGA-CR-7389 31 73 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-7389 31 73 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-7389 31 75 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CR-7389 31 75 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 33 5610 No External Beam cgy 
+TCGA-CR-7389 31 75 Treatment Radiation Therapy Radiation 3 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-7390 134 176 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 21 6000 No External cgy 
+TCGA-CR-7390 134 176 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External 
+TCGA-CR-7392 109 151 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6000 No External 
+TCGA-CR-7392 109 151 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5400 No External 
+TCGA-CR-7393 -303 105 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-7393 63 105 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-7393 62 104 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field No External 
+TCGA-CR-7394 106 126 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 15 3000 No External cgy 
+TCGA-CR-7394 106 126 Treatment Radiation Therapy Radiation 2 complete response Regional Site 15 3000 No External cgy 
+TCGA-CR-7397 63 99 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-7397 63 99 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-7397 61 100 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 27 4860 No External cgy 
+TCGA-CR-7397 61 100 Treatment Radiation Therapy Radiation 2 complete response Regional Site 27 6000 No External cgy 
+TCGA-CR-7397 61 100 Treatment Radiation Therapy Radiation 3 complete response Regional Site 27 4860 No External cgy 
+TCGA-CR-7402 37 101 Treatment Chemotherapy Carboplatin 1.5 auc 1 Other, Specify In Notes IV No 
+TCGA-CR-7402 37 101 Treatment Chemotherapy Paclitaxel 40 mg/m2 1 Other, Specify In Notes IV No 
+TCGA-CR-7402 36 101 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 7020 No External Beam cgy 
+TCGA-CR-7402 36 101 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 5040 No External Beam cgy 
+TCGA-CR-7404 18 67 Treatment Chemotherapy Paclitaxel No No 
+TCGA-CR-7404 1297 1318 Treatment Chemotherapy clinical progressive disease phase i trial No Yes 
+TCGA-CR-7404 1332 1416 Treatment Chemotherapy Pemetrexed No No 
+TCGA-CR-7404 18 67 Treatment Chemotherapy Carboplatin No No 
+TCGA-CR-7404 85 135 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-CR-7404 85 135 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-CR-7404 298 354 Treatment Chemotherapy Cetuximab partial response No No 
+TCGA-CR-7404 375 415 Treatment Chemotherapy Capecitabine No No 
+TCGA-CR-7404 466 599 Treatment Chemotherapy Cetuximab No No 
+TCGA-CR-7404 606 634 Treatment Chemotherapy Paclitaxel stable disease No No 
+TCGA-CR-7404 1052 1080 Treatment Chemotherapy Methotrexate No No 
+TCGA-CR-7404 78 137 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Primary Primary Tumor Field 1 33 6930 No External Beam cgy 
+TCGA-CR-7404 78 137 Treatment Radiation Therapy Radiation 2 Other, Specify In Notes Primary Regional Site 1 33 5610 No External Beam cgy 
+TCGA-CR-7404 78 137 Treatment Radiation Therapy Radiation 4 Other, Specify In Notes Primary Regional Site 1 33 6930 No External Beam cgy 
+TCGA-CV-5430 1641 1702 Treatment Chemotherapy Carboplatin 4 Recurrence IV No 
+TCGA-CV-5430 1641 1702 Treatment Chemotherapy Paclitaxel 4 Recurrence IV No 
+TCGA-CV-5430 1641 1702 Treatment Chemotherapy Irinotecan 4 Recurrence IV No 
+TCGA-CV-5430 379 382 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 4 50 No External Beam cgy 
+TCGA-CV-5431 28 69 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 9 7000 No External Beam cgy 
+TCGA-CV-5434 3246 3259 Treatment Chemotherapy Carboplatin 2 Recurrence IV No 
+TCGA-CV-5434 3246 3259 Treatment Chemotherapy Paclitaxel 2 Recurrence IV No 
+TCGA-CV-5434 45 87 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 6000 No External Beam cgy 
+TCGA-CV-5435 28 63 Treatment Chemotherapy Carboplatin 2 Adjuvant IV No 
+TCGA-CV-5435 305 336 Treatment Chemotherapy Paclitaxel Recurrence IV No 
+TCGA-CV-5435 305 336 Treatment Chemotherapy Carboplatin Recurrence IV No 
+TCGA-CV-5435 21 62 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 30 6000 No External Beam cgy 
+TCGA-CV-5439 231 345 Treatment Chemotherapy Carboplatin 6 Recurrence IV No 
+TCGA-CV-5439 378 440 Treatment Chemotherapy Gefitinib 2 Palliative PO No 
+TCGA-CV-5439 64 108 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 33 4500 No External Beam cgy 
+TCGA-CV-5440 19 Treatment Chemotherapy Paclitaxel Adjuvant IV Yes 
+TCGA-CV-5440 28 86 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 30 60 No External Beam cgy 
+TCGA-CV-5441 52 89 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 30 60 No External Beam 
+TCGA-CV-5966 33 78 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 20 40 No External gy 
+TCGA-CV-5966 33 78 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-5973 50 80 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-5977 40 82 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-5977 40 82 Treatment Radiation Therapy Radiation 2 complete response Regional Site 21 42 No External gy 
+TCGA-CV-5979 43 84 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 30 6000 No External Beam cgy 
+TCGA-CV-6936 73 134 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 30 66 No External gy 
+TCGA-CV-6941 31 70 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 62 No External gy 
+TCGA-CV-6941 31 70 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-6950 26 56 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 63 No External 
+TCGA-CV-6954 48 89 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External 
+TCGA-CV-6954 48 89 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External 
+TCGA-CV-6959 140 160 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 15 45 No External gy 
+TCGA-CV-7090 69 108 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 2 60 No External gy 
+TCGA-CV-7090 69 108 Treatment Radiation Therapy Radiation 2 complete response Regional Site 2 50 No External gy 
+TCGA-CV-7235 46 81 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 20 40 No External gy 
+TCGA-CV-7235 43 81 Treatment Radiation Therapy Radiation 2 complete response Regional Site 10 20 No External gy 
+TCGA-CV-7238 86 127 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-7250 28 84 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External 
+TCGA-CV-7252 33 89 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 35 63 No External gy 
+TCGA-CV-7416 334 334 Treatment Chemotherapy Cisplatin No No 
+TCGA-CV-7416 0 Treatment Radiation Therapy Radiation 1 Other, Specify In Notes Neoadjuvant Primary Tumor Field External Beam 
+TCGA-CV-7418 62 Treatment Radiation Therapy Radiation 1 complete response No 
+TCGA-CV-7418 509 567 Treatment Radiation Therapy Radiation 2 Local Recurrence 31 60 No External gy 
+TCGA-CV-7422 41 78 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 30 No External gy 
+TCGA-CV-7422 41 78 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-7429 70 Treatment Radiation Therapy Radiation 1 partial response Primary Tumor Field 12 36 No External gy 
+TCGA-CV-7435 43 87 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 30 No External gy 
+TCGA-CV-7435 -291 87 Treatment Radiation Therapy Radiation 2 complete response Regional Site 27 54 No External gy 
+TCGA-CV-7435 -291 87 Treatment Radiation Therapy Radiation 3 complete response Regional Site 14 42 No External gy 
+TCGA-CV-A45R 39 78 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 31 62 No External gy 
+TCGA-CV-A45R 39 78 Treatment Radiation Therapy Radiation 2 complete response Regional Site 13 39 No External gy 
+TCGA-CV-A45U 31 70 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A45U 31 70 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-A45X 68 107 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A45X 68 107 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-A45Y 37 78 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A45Z 965 1004 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A460 28 69 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 21 42 No External gy 
+TCGA-CV-A461 39 52 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A461 39 52 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 54 No External gy 
+TCGA-CV-A464 70 108 Treatment Radiation Therapy Radiation 1 complete response Local Recurrence 30 60 No External gy 
+TCGA-CV-A464 70 108 Treatment Radiation Therapy Radiation 2 complete response Local Recurrence 30 57 No External gy 
+TCGA-CV-A464 70 108 Treatment Radiation Therapy Radiation 3 complete response Regional Site 30 54 No External gy 
+TCGA-CV-A468 26 67 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 21 42 No External gy 
+TCGA-CV-A468 26 67 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-A468 26 67 Treatment Radiation Therapy Radiation 3 complete response Regional Site 14 42 No External gy 
+TCGA-CV-A6JD 41 80 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A6JD 41 80 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External gy 
+TCGA-CV-A6JN 39 77 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A6JN 39 77 Treatment Radiation Therapy Radiation 2 complete response Regional Site 30 57 No External gy 
+TCGA-CV-A6JO 28 69 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A6JU 75 110 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A6JU 75 110 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 50 No External 
+TCGA-CV-A6JY 52 94 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A6JY 52 94 Treatment Radiation Therapy Radiation 2 complete response Regional Site 30 56 No External gy 
+TCGA-CV-A6K1 44 85 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-CV-A6K2 53 92 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 30 60 No External gy 
+TCGA-D6-6515 65 71 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 5 2000 No External Beam cgy 
+TCGA-D6-6517 194 257 Treatment Chemotherapy Methotrexate 8 8 mg Progression IV No 62.8 mg 
+TCGA-D6-6517 270 331 Treatment Radiation Therapy Radiation 1 Palliative Distant Site 2000 No External Beam cgy 
+TCGA-D6-6823 84 97 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 32 6200 No External Beam cgy 
+TCGA-D6-6827 57 67 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 8 4800 No Implants cgy 
+TCGA-D6-A6EK 39 105 Treatment Chemotherapy Cisplatin partial response No No 
+TCGA-D6-A6EK 39 105 Treatment Radiation Therapy Radiation 1 partial response Primary Tumor Field 35 70 No External gy 
+TCGA-D6-A6EM 51 94 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 66 No External gy 
+TCGA-D6-A6EN 83 125 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-D6-A6EO 73 119 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 66 No External gy 
+TCGA-D6-A6EQ 51 92 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-D6-A6ES 88 132 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-D6-A74Q 44 88 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-DQ-5624 36 63 Treatment Chemotherapy Cisplatin 2 80 mg/m2 1 Adjuvant IV No 347 mg 
+TCGA-DQ-5624 37 86 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 5000 No External Beam cgy 
+TCGA-DQ-5629 52 98 Treatment Chemotherapy Carboplatin 07 1 Adjuvant IV No 233 mg 
+TCGA-DQ-5629 52 98 Treatment Radiation Therapy Radiation 1 Adjuvant Regional Site 1 35 7000 No External Beam cgy 
+TCGA-DQ-5630 34 76 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 30 6000 No External Beam cgy 
+TCGA-DQ-5631 32 67 Treatment Chemotherapy Cisplatin 5 40 mg/m2 01 Adjuvant IV No 80 mg 
+TCGA-DQ-5631 475 518 Treatment Chemotherapy Carboplatin 02 2 Palliative IV No 577 mg 
+TCGA-DQ-5631 475 518 Treatment Chemotherapy Pemetrexed 2 2 Palliative IV No 965 mg 
+TCGA-DQ-5631 32 71 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6000 No External Beam cgy 
+TCGA-DQ-5631 449 456 Treatment Radiation Therapy Radiation 2 Palliative Chest Distant Recurrence 2 5 2000 No External Beam cgy 
+TCGA-DQ-5631 477 491 Treatment Radiation Therapy Radiation 3 Palliative Back Distant Recurrence 3 12 3600 No External Beam cgy 
+TCGA-DQ-7588 159 215 Treatment Chemotherapy Cetuximab 1 1 Recurrence IV No 
+TCGA-DQ-7588 379 421 Treatment Chemotherapy Docetaxel 3 152 mg 2 Palliative IV No 455 mg 
+TCGA-DQ-7588 379 421 Treatment Chemotherapy Gossypol 3 80 mg/day 2 Palliative PO No 480 mg 
+TCGA-DQ-7588 159 215 Treatment Chemotherapy Carboplatin 1 1 Recurrence IV No 
+TCGA-DQ-7588 421 425 Treatment Chemotherapy Gossypol 1 20 mg/day 2 Palliative PO No 100 mg 
+TCGA-DQ-7588 159 215 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 32 6400 No External Beam cgy 
+TCGA-DQ-7589 9 34 Treatment Chemotherapy Carboplatin stable disease No No 
+TCGA-DQ-7589 9 34 Treatment Chemotherapy Docetaxel stable disease No No 
+TCGA-DQ-7589 9 34 Treatment Chemotherapy Fluorouracil stable disease No No 
+TCGA-DQ-7589 119 154 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-DQ-7589 119 154 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-DQ-7589 119 164 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-DQ-7590 45 87 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-DQ-7590 45 87 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-DQ-7590 45 91 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 70 No External gy 
+TCGA-DQ-7591 22 69 Treatment Chemotherapy Carboplatin 1 83 mg/wk 1 Adjuvant IV No 664 mg 
+TCGA-DQ-7591 22 69 Treatment Chemotherapy Paclitaxel 1 56 mg/wk 1 Adjuvant IV No 448 mg 
+TCGA-DQ-7591 22 70 Treatment Radiation Therapy Radiation 1 Adjuvant Concurrent Chemoradiation As Definitive Treatment Primary Tumor Field 1 35 7000 No External Beam cgy 
+TCGA-DQ-7592 52 94 Treatment Chemotherapy Cisplatin 1 65 mg/wk 1 Adjuvant IV No 455 mg 
+TCGA-DQ-7592 52 104 Treatment Radiation Therapy Radiation 1 Adjuvant Primary Tumor Field 1 6600 No External Beam cgy 
+TCGA-DQ-7593 25 67 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-DQ-7593 25 67 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-DQ-7593 25 82 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 70 No External gy 
+TCGA-DQ-7594 12 53 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-DQ-7594 12 53 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-DQ-7594 12 61 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 70 No External gy 
+TCGA-DQ-7595 34 62 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-DQ-7595 34 85 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 70 No External gy 
+TCGA-DQ-7596 13 60 Treatment Chemotherapy Cetuximab partial response No No 
+TCGA-DQ-7596 203 266 Treatment Chemotherapy Pemetrexed complete response No No 
+TCGA-DQ-7596 203 266 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-DQ-7596 19 69 Treatment Radiation Therapy Radiation 1 partial response Primary Tumor Field 35 70 No External gy 
+TCGA-F7-7848 92 117 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 18 36 No External gy 
+TCGA-F7-7848 142 162 Treatment Radiation Therapy Radiation 2 complete response Regional Site 14 28 No External gy 
+TCGA-F7-A50G 43 72 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 40 80 No External gy 
+TCGA-F7-A50J 70 114 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-F7-A50J 70 114 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-F7-A61S 20 73 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 2 98 No External gy 
+TCGA-F7-A61S 230 255 Treatment Radiation Therapy Radiation 2 stable disease Regional Site 1 38 No External gy 
+TCGA-F7-A623 19 67 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 23 46 No External gy 
+TCGA-F7-A624 77 148 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-H7-7774 424 454 Treatment Radiation Therapy Radiation 1 No 
+TCGA-H7-8501 76 137 Treatment Chemotherapy complete response No 
+TCGA-H7-8501 76 137 Treatment Radiation Therapy Radiation 1 complete response No 
+TCGA-H7-8502 77 108 Treatment Chemotherapy No 
+TCGA-H7-8502 77 108 Treatment Radiation Therapy Radiation 1 No 
+TCGA-H7-A6C4 74 Treatment Chemotherapy Cisplatin complete response No 
+TCGA-H7-A6C4 74 113 Treatment Radiation Therapy Radiation 1 complete response 63 No External gy 
+TCGA-H7-A6C5 65 112 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-H7-A76A 62 101 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 63 No External gy 
+TCGA-H7-A76A 62 101 Treatment Radiation Therapy Radiation 2 complete response Regional Site 60 No External gy 
+TCGA-H7-A76A 62 101 Treatment Radiation Therapy Radiation 3 complete response Regional Site 51 No External 
+TCGA-HD-7229 35 85 Treatment Chemotherapy Carboplatin No No 
+TCGA-HD-7229 35 85 Treatment Chemotherapy Paclitaxel No No 
+TCGA-HD-7229 35 85 Treatment Chemotherapy Cetuximab No No 
+TCGA-HD-7229 187 187 Treatment Chemotherapy Cisplatin clinical progressive disease No No 
+TCGA-HD-7229 187 187 Treatment Chemotherapy Docetaxel clinical progressive disease No No 
+TCGA-HD-7229 187 187 Treatment Chemotherapy Fluorouracil clinical progressive disease No No 
+TCGA-HD-7229 35 85 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 35 7000 No External cgy 
+TCGA-HD-7753 71 85 Treatment Chemotherapy Cetuximab complete response No No 
+TCGA-HD-7753 68 126 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6630 No External cgy 
+TCGA-HD-7831 72 116 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-HD-7832 126 172 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field No External 
+TCGA-HD-8224 90 147 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-HD-8224 97 147 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 33 6600 No External cgy 
+TCGA-HD-8314 79 121 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-HD-8314 79 114 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-HL-7533 24 87 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-HL-7533 24 87 Treatment Chemotherapy Docetaxel complete response No No 
+TCGA-HL-7533 24 87 Treatment Chemotherapy Capecitabine complete response No No 
+TCGA-IQ-7630 102 147 Treatment Chemotherapy Docetaxel complete response No No 
+TCGA-IQ-7630 102 147 Treatment Targeted Molecular Therapy Cetuximab complete response No No 
+TCGA-IQ-7630 102 147 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-IQ-7632 73 114 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-IQ-A61E 96 138 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-IQ-A61E 103 142 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 60 No External gy 
+TCGA-IQ-A61G 130 168 Treatment Chemotherapy Cisplatin clinical progressive disease No No 
+TCGA-IQ-A61G 131 168 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 30 60 No External gy 
+TCGA-IQ-A61J 64 99 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-IQ-A61J 62 101 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 60 No External gy 
+TCGA-IQ-A61K 108 108 Treatment Chemotherapy Cisplatin No No 
+TCGA-IQ-A61K 112 138 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 44 No External gy 
+TCGA-IQ-A61L 262 Treatment Chemotherapy Cisplatin Yes No 
+TCGA-IQ-A61L 262 Treatment Chemotherapy Cetuximab Yes No 
+TCGA-IQ-A61L 50 85 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 9 18 No External gy 
+TCGA-IQ-A61L 254 262 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Local Recurrence 4 8 No External gy 
+TCGA-IQ-A61O 69 111 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-IQ-A61O 69 127 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-IQ-A6SG 59 111 Treatment Radiation Therapy Radiation 1 Regional Site 30 60 No External gy 
+TCGA-IQ-A6SH 50 95 Treatment Radiation Therapy Radiation 1 Regional Site 30 60 No External gy 
+TCGA-KU-A66S 59 119 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 38 6840 No External cgy 
+TCGA-KU-A66T 121 166 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 30 5400 No External cgy 
+TCGA-KU-A6H7 65 100 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-KU-A6H7 65 115 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6660 No External cgy 
+TCGA-KU-A6H7 65 115 Treatment Radiation Therapy Radiation 2 complete response Regional Site 33 6660 No External cgy 
+TCGA-KU-A6H7 65 115 Treatment Radiation Therapy Radiation 3 complete response Regional Site 33 5610 No External cgy 
+TCGA-KU-A6H7 65 115 Treatment Radiation Therapy Radiation 4 complete response Regional Site 33 5280 No External cgy 
+TCGA-KU-A6H8 122 174 Treatment Immunotherapy Cetuximab clinical progressive disease No No 
+TCGA-KU-A6H8 210 Treatment Chemotherapy Paclitaxel Yes No 
+TCGA-KU-A6H8 210 Treatment Chemotherapy Carboplatin Yes No 
+TCGA-KU-A6H8 116 172 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 36 7100 No External cgy 
+TCGA-KU-A6H8 116 172 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Regional Site 36 5240 No External cgy 
+TCGA-KU-A6H8 116 172 Treatment Radiation Therapy Radiation 3 radiographic progressive disease Regional Site 36 5860 No External cgy 
+TCGA-KU-A6H8 116 172 Treatment Radiation Therapy Radiation 4 radiographic progressive disease Regional Site 36 5550 No External cgy 
+TCGA-MT-A51W 70 100 Treatment Radiation Therapy Radiation 1 stable disease Primary Tumor Field No External 
+TCGA-MT-A67G 72 112 Treatment Chemotherapy Cisplatin No No 
+TCGA-MT-A67G 50 105 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 7 6000 No External cgy 
+TCGA-MZ-A5BI 41 70 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-MZ-A5BI 40 86 Treatment Radiation Therapy Radiation 1 complete response Regional Site 33 69.96 No External gy 
+TCGA-MZ-A5BI 40 86 Treatment Radiation Therapy Radiation 2 complete response Primary Tumor Field 33 69.96 No External gy 
+TCGA-MZ-A6I9 57 99 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-MZ-A6I9 365 421 Treatment Targeted Molecular Therapy Rigosertib clinical progressive disease No Yes 
+TCGA-MZ-A6I9 449 449 Treatment Chemotherapy Carboplatin clinical progressive disease No No 
+TCGA-MZ-A6I9 449 449 Treatment Chemotherapy Docetaxel clinical progressive disease No No 
+TCGA-MZ-A6I9 57 102 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 69.96 No External gy 
+TCGA-MZ-A6I9 57 102 Treatment Radiation Therapy Radiation 2 complete response Regional Site 33 69.96 No External gy 
+TCGA-MZ-A7D7 77 119 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-MZ-A7D7 526 Treatment Targeted Molecular Therapy Cetuximab Yes Yes 
+TCGA-MZ-A7D7 526 Treatment Chemotherapy Eribulin Yes Yes 
+TCGA-MZ-A7D7 77 126 Treatment Radiation Therapy Radiation 1 complete response Regional Site 33 66 No External gy 
+TCGA-MZ-A7D7 77 126 Treatment Radiation Therapy Radiation 2 complete response Primary Tumor Field 33 66 No External gy 
+TCGA-P3-A5Q5 69 120 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6600 No External cgy 
+TCGA-P3-A5Q5 69 120 Treatment Radiation Therapy Radiation 2 complete response Regional Site 6600 No External cgy 
+TCGA-P3-A5Q6 43 104 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-P3-A5Q6 43 104 Treatment Chemotherapy Cetuximab complete response No No 
+TCGA-P3-A5Q6 49 98 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 4000 No External cgy 
+TCGA-P3-A5Q6 49 98 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5000 No External cgy 
+TCGA-P3-A5QE 38 80 Treatment Radiation Therapy Radiation 1 complete response Regional Site 5400 No External cgy 
+TCGA-P3-A5QE 38 80 Treatment Radiation Therapy Radiation 2 complete response Primary Tumor Field 6000 No External cgy 
+TCGA-P3-A5QF 57 88 Treatment Chemotherapy Cetuximab No No 
+TCGA-P3-A5QF 50 105 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 6660 No External cgy 
+TCGA-P3-A5QF 50 105 Treatment Radiation Therapy Radiation 2 Regional Site 6660 No External cgy 
+TCGA-P3-A6SW 61 122 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6480 No External cgy 
+TCGA-P3-A6SW 61 122 Treatment Radiation Therapy Radiation 2 complete response Regional Site 6480 No External cgy 
+TCGA-P3-A6SX 61 91 Treatment Chemotherapy complete response No No 
+TCGA-P3-A6SX 30 91 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 5940 No External cgy 
+TCGA-P3-A6SX 30 91 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5040 No External cgy 
+TCGA-P3-A6T0 59 120 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6000 No External cgy 
+TCGA-P3-A6T2 30 91 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-P3-A6T2 30 91 Treatment Radiation Therapy Radiation 1 complete response No External 
+TCGA-P3-A6T3 61 92 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-P3-A6T3 61 120 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6640 No External cgy 
+TCGA-P3-A6T3 61 120 Treatment Radiation Therapy Radiation 2 complete response Regional Site 6640 No External cgy 
+TCGA-P3-A6T6 273 365 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-P3-A6T6 273 365 Treatment Chemotherapy Paclitaxel clinical progressive disease No No 
+TCGA-P3-A6T6 30 61 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6600 No External cgy 
+TCGA-P3-A6T6 30 61 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5000 No External cgy 
+TCGA-P3-A6T7 91 122 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-P3-A6T7 91 122 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 6600 No External cgy 
+TCGA-P3-A6T7 91 122 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5000 No External cgy 
+TCGA-P3-A6T8 92 122 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-P3-A6T8 92 122 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 5000 No External cgy 
+TCGA-P3-A6T8 92 122 Treatment Radiation Therapy Radiation 2 complete response Regional Site 5000 No External cgy 
+TCGA-QK-A652 77 77 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 31 59.3 No External gy 
+TCGA-QK-A6IF 17 63 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-QK-A6IF 17 63 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-QK-A6IF 16 63 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 70 No External gy 
+TCGA-QK-A6IF 16 63 Treatment Radiation Therapy Radiation 2 complete response Regional Site 35 59.85 No External gy 
+TCGA-QK-A6IF 16 63 Treatment Radiation Therapy Radiation 3 complete response Regional Site 35 53.9 No External gy 
+TCGA-QK-A6IG 51 98 Treatment Chemotherapy Carboplatin clinical progressive disease No No 
+TCGA-QK-A6IG 51 98 Treatment Chemotherapy Paclitaxel clinical progressive disease No No 
+TCGA-QK-A6IG 51 98 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 33 66 No External gy 
+TCGA-QK-A6IG 51 98 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Regional Site 33 59.73 No External gy 
+TCGA-QK-A6IG 51 98 Treatment Radiation Therapy Radiation 3 radiographic progressive disease Regional Site 33 53.79 No External gy 
+TCGA-QK-A6IH 49 84 Treatment Chemotherapy Carboplatin clinical progressive disease No No 
+TCGA-QK-A6IH 49 84 Treatment Chemotherapy Paclitaxel clinical progressive disease No No 
+TCGA-QK-A6IH 49 91 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 38 56 No External gy 
+TCGA-QK-A6IH 49 91 Treatment Radiation Therapy Radiation 2 Regional Site 38 50.96 No External gy 
+TCGA-QK-A6IH 49 91 Treatment Radiation Therapy Radiation 3 Regional Site 38 45.92 No External gy 
+TCGA-QK-A6II 57 99 Treatment Chemotherapy Cisplatin No No 
+TCGA-QK-A6II 183 183 Treatment Chemotherapy Carboplatin clinical progressive disease No No 
+TCGA-QK-A6II 183 183 Treatment Chemotherapy Paclitaxel clinical progressive disease No No 
+TCGA-QK-A6II 183 183 Treatment Targeted Molecular Therapy Cetuximab clinical progressive disease No No 
+TCGA-QK-A6II 57 112 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 24 66.7 No External gy 
+TCGA-QK-A6II 57 112 Treatment Radiation Therapy Radiation 2 Regional Site 24 60.73 No External gy 
+TCGA-QK-A6II 57 112 Treatment Radiation Therapy Radiation 3 Regional Site 24 54.76 No External gy 
+TCGA-QK-A6VB 78 116 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-QK-A6VB 78 116 Treatment Radiation Therapy Radiation 2 complete response Regional Site 30 6000 No External cgy 
+TCGA-QK-A6VC 49 66 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 14 28 No External gy 
+TCGA-QK-A6VC 49 66 Treatment Radiation Therapy Radiation 2 Regional Site 14 25.5 No External gy 
+TCGA-QK-A8Z7 105 166 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-QK-A8Z7 105 166 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-QK-A8Z7 101 151 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 70.29 No External gy 
+TCGA-QK-A8Z7 101 151 Treatment Radiation Therapy Radiation 2 complete response Regional Site 70.29 No External gy 
+TCGA-QK-A8Z7 101 151 Treatment Radiation Therapy Radiation 3 complete response Regional Site 70.29 No External gy 
+TCGA-QK-A8Z8 157 157 Treatment Chemotherapy Docetaxel No No 
+TCGA-QK-A8Z8 157 157 Treatment Chemotherapy Cisplatin No No 
+TCGA-QK-A8Z8 157 157 Treatment Chemotherapy Fluorouracil No No 
+TCGA-QK-A8Z9 50 102 Treatment Chemotherapy Carboplatin complete response No No 
+TCGA-QK-A8Z9 50 102 Treatment Chemotherapy Paclitaxel complete response No No 
+TCGA-QK-A8Z9 267 302 Treatment Chemotherapy Carboplatin No No 
+TCGA-QK-A8Z9 267 302 Treatment Chemotherapy Paclitaxel No No 
+TCGA-QK-A8Z9 49 99 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 60.06 No External gy 
+TCGA-QK-A8Z9 49 99 Treatment Radiation Therapy Radiation 2 complete response Regional Site 33 66 No External gy 
+TCGA-QK-A8Z9 49 99 Treatment Radiation Therapy Radiation 3 complete response Regional Site 33 56.1 No External gy 
+TCGA-QK-A8Z9 268 310 Treatment Radiation Therapy Radiation 4 Distant Site 28 50.4 No External gy 
+TCGA-QK-A8ZA 71 118 Treatment Chemotherapy Cisplatin No No 
+TCGA-QK-A8ZA 71 135 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 35 70 No External gy 
+TCGA-QK-A8ZA 71 135 Treatment Radiation Therapy Radiation 2 Regional Site 35 63 No External gy 
+TCGA-QK-A8ZA 71 135 Treatment Radiation Therapy Radiation 3 Regional Site 35 56 No External gy 
+TCGA-QK-A8ZB 45 95 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 60 No External gy 
+TCGA-QK-A8ZB 45 95 Treatment Radiation Therapy Radiation 2 complete response Regional Site 30 55.82 No External gy 
+TCGA-QK-A8ZB 45 95 Treatment Radiation Therapy Radiation 3 complete response Regional Site 30 55.82 No External gy 
+TCGA-QK-AA3J 56 106 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 70 No External gy 
+TCGA-QK-AA3J 56 106 Treatment Radiation Therapy Radiation 2 complete response Regional Site 35 54 No External gy 
+TCGA-QK-AA3J 56 106 Treatment Radiation Therapy Radiation 3 complete response Regional Site 35 54 No External gy 
+TCGA-QK-AA3K 120 145 Treatment Chemotherapy Cisplatin No No 
+TCGA-QK-AA3K 48 145 Treatment Radiation Therapy Radiation 1 Primary Tumor Field 30 66 No External gy 
+TCGA-QK-AA3K 48 145 Treatment Radiation Therapy Radiation 2 Regional Site 30 60 No External gy 
+TCGA-QK-AA3K 48 145 Treatment Radiation Therapy Radiation 3 Regional Site 30 60 No External gy 
+TCGA-RS-A6TO 41 41 Treatment Immunotherapy Cetuximab complete response No No 
+TCGA-RS-A6TO 48 94 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 35 7000 No External cgy 
+TCGA-T2-A6WX 71 92 Treatment Chemotherapy Carboplatin clinical progressive disease No No 
+TCGA-T2-A6WX 71 92 Treatment Chemotherapy Paclitaxel clinical progressive disease No No 
+TCGA-T2-A6WX 71 92 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-T2-A6WX 71 128 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Primary Tumor Field 33 6996 No External cgy 
+TCGA-T2-A6WX 71 128 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Regional Site No External 
+TCGA-T2-A6WZ 247 303 Treatment Targeted Molecular Therapy Sonolisib stable disease pi3k inhibitor No Yes 
+TCGA-T2-A6WZ 247 303 Treatment Chemotherapy Docetaxel stable disease No Yes 
+TCGA-T2-A6WZ 128 163 Treatment Chemotherapy Cetuximab clinical progressive disease No No 
+TCGA-T2-A6WZ 139 170 Treatment Radiation Therapy Radiation 1 radiographic progressive disease Regional Site 6000 No External cgy 
+TCGA-T2-A6WZ 139 170 Treatment Radiation Therapy Radiation 2 radiographic progressive disease Primary Tumor Field 6000 No External cgy 
+TCGA-T2-A6X0 60 95 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-T2-A6X0 63 99 Treatment Radiation Therapy Radiation 1 complete response Regional Site 66 No External gy 
+TCGA-T2-A6X0 63 99 Treatment Radiation Therapy Radiation 2 complete response Primary Tumor Field 66 No External gy 
+TCGA-TN-A7HI 66 117 Treatment Radiation Therapy Radiation 1 complete response 37 6600 No External cgy 
+TCGA-TN-A7HJ 31 92 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-TN-A7HJ 43 98 Treatment Radiation Therapy Radiation 1 complete response Regional Site 33 6600 No External cgy 
+TCGA-TN-A7HL 35 62 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-TN-A7HL 35 77 Treatment Radiation Therapy Radiation 1 complete response 30 6000 No External cgy 
+TCGA-UF-A71B 212 269 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 32 6400 No External cgy 
+TCGA-UF-A71B 212 269 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A71D 155 211 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-UF-A71D 155 203 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A71E 229 276 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-UF-A71E 229 266 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7J9 172 222 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-UF-A7J9 172 215 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JA 281 347 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 34 6120 No External cgy 
+TCGA-UF-A7JA 281 338 Treatment Radiation Therapy Radiation 2 complete response Regional Site 28 5040 No External cgy 
+TCGA-UF-A7JC 131 173 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-UF-A7JC 132 173 Treatment Radiation Therapy Radiation 1 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JC 132 187 Treatment Radiation Therapy Radiation 2 complete response Primary Tumor Field 33 6400 No External cgy 
+TCGA-UF-A7JD 224 280 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-UF-A7JD 224 265 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JF 71 86 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-UF-A7JF 56 125 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 33 6600 No External cgy 
+TCGA-UF-A7JF 56 111 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JH 102 151 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-UF-A7JH 102 140 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JJ 60 102 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-UF-A7JJ 59 107 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-UF-A7JJ 59 100 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JK 132 174 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-UF-A7JK 127 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 32 6400 No External cgy 
+TCGA-UF-A7JK 127 181 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5600 No External cgy 
+TCGA-UF-A7JO 214 265 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 34 6120 No External cgy 
+TCGA-UF-A7JO 214 250 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 4500 No External cgy 
+TCGA-UF-A7JS 95 144 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 30 6000 No External cgy 
+TCGA-UF-A7JS 95 134 Treatment Radiation Therapy Radiation 2 complete response Regional Site 25 5000 No External cgy 
+TCGA-UF-A7JT 173 229 Treatment Chemotherapy Cisplatin complete response No No 
+TCGA-UF-A7JT 176 229 Treatment Radiation Therapy Radiation 1 complete response Primary Tumor Field 34 6120 No External cgy 
+TCGA-UF-A7JT 176 221 Treatment Radiation Therapy Radiation 2 complete response Regional Site 28 5040 No External cgy 
+TCGA-UP-A6WW 61 123 Treatment Radiation Therapy Radiation 1 partial response Primary Tumor Field 33 66 No External gy 

meta_armlevel_cna.txt

@@ -0,0 +1,10 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: ARMLEVEL_CNA
+datatype: CATEGORICAL
+stable_id: armlevel_cna
+profile_name: Putative arm-level copy-number from GISTIC
+profile_description: Putative arm-level copy-number from GISTIC 2.0.
+data_filename: data_armlevel_cna.txt
+show_profile_in_analysis_tab: true
+generic_entity_meta_properties: NAME,DESCRIPTION

meta_clinical_patient.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt

meta_clinical_sample.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt

meta_cna.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: DISCRETE
+stable_id: gistic
+show_profile_in_analysis_tab: true
+profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.
+profile_name: Putative copy-number alterations from GISTIC
+data_filename: data_cna.txt

meta_cna_hg19_seg.txt

@@ -0,0 +1,9 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+stable_id: hnsc_tcga_pan_can_atlas_2018_segment
+show_profile_in_analysis_tab: false
+description: Segment data for the TCGA PanCanAtlas study.
+profile_name: Segment data values
+reference_genome_id: hg19
+data_filename: data_cna_hg19.seg

meta_gene_panel_matrix.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
+data_filename: data_gene_panel_matrix.txt

meta_genetic_ancestry.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: GENETIC_ANCESTRY
+datatype: LIMIT-VALUE
+stable_id: genetic_ancestry
+profile_name: Genetic Ancestry
+profile_description: Genetic ancestries were determined using five different methods as described in Carrot-Zhang et al (2020). These consensus calls were created based on the ancestral population that received the majority of assignments for each patient. The original data is <a href="https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020">here</a>.
+data_filename: data_genetic_ancestry.txt
+show_profile_in_analysis_tab: true
+generic_entity_meta_properties: NAME
+value_sort_order: ASC

meta_log2_cna.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: LOG2-VALUE
+stable_id: log2CNA
+show_profile_in_analysis_tab: false
+profile_description: Log2 copy-number values for each gene (from Affymetrix SNP6).
+profile_name: Log2 copy-number values
+data_filename: data_log2_cna.txt

meta_methylation_hm27_hm450_merged.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: METHYLATION
+datatype: LIMIT-VALUE
+stable_id: methylation_hm27_hm450_merge
+profile_name: Methylation (HM27 and HM450 merge)
+profile_description: Methylation between-platform (hm27 and hm450) normalization values.
+data_filename: data_methylation_hm27_hm450_merged.txt
+show_profile_in_analysis_tab: true
+value_sort_order: DESC
+generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID

meta_microbiome.txt

@@ -0,0 +1,12 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: MICROBIOME_SIGNATURE
+datatype: LIMIT-VALUE
+stable_id: microbiome_signature
+profile_name: Microbiome Signatures (log RNA Seq CPM)
+profile_description: Microbial Signatures (log-cpm) from whole-transcriptome sequencing studies of TCGA (Poore et al. Nature 2020).
+data_filename: data_microbiome.txt
+show_profile_in_analysis_tab: true
+pivot_threshold_value: 0
+value_sort_order: ASC
+generic_entity_meta_properties: NAME,DESCRIPTION,URL

meta_mrna_seq_v2_rsem.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: rna_seq_v2_mrna
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: CONTINUOUS
+show_profile_in_analysis_tab: FALSE
+profile_name: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
+profile_description:mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
+data_filename: data_mrna_seq_v2_rsem.txt

meta_mrna_seq_v2_rsem_zscores_ref_all_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: rna_seq_v2_mrna_median_all_sample_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_name: mRNA expression z-scores relative to all samples (log RNA Seq V2 RSEM)
+profile_description: Log-transformed mRNA expression z-scores compared to the expression distribution of all samples (RNA Seq V2 RSEM).
+data_filename: data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt

meta_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+data_filename: data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
+stable_id: rna_seq_v2_mrna_median_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_description: mRNA expression z-scores (RNA Seq V2 RSEM) compared to the expression distribution of each gene tumors that are diploid for this gene.
+profile_name: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM)

meta_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: rna_seq_v2_mrna_median_all_sample_ref_normal_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_name: mRNA expression z-scores relative to normal samples (log RNA Seq V2 RSEM)
+profile_description: Expression z-scores of tumor samples compared to the expression distribution of all log-transformed mRNA expression of adjacent normal samples in the cohort.
+data_filename: data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt

meta_mutations.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+stable_id: mutations
+show_profile_in_analysis_tab: true
+profile_description: Mutation data from whole exome sequencing of 523 Head and Neck Squamous Cell Carcinoma samples.
+profile_name: Mutations
+data_filename: data_mutations.txt