|
{ |
|
"generate_apidocs": [ |
|
[ |
|
"docs/source/conf.py", |
|
[ |
|
"generate_apidocs" |
|
] |
|
] |
|
], |
|
"setup": [ |
|
[ |
|
"docs/source/conf.py", |
|
[ |
|
"setup" |
|
] |
|
] |
|
], |
|
"get_keywords": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"get_keywords" |
|
] |
|
] |
|
], |
|
"get_config": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"get_config" |
|
] |
|
] |
|
], |
|
"decorate": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"register_vcs_handler", |
|
"decorate" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"register_vcs_handler", |
|
"decorate" |
|
] |
|
] |
|
], |
|
"register_vcs_handler": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"register_vcs_handler" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"register_vcs_handler" |
|
] |
|
] |
|
], |
|
"run_command": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"run_command" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"run_command" |
|
] |
|
] |
|
], |
|
"versions_from_parentdir": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"versions_from_parentdir" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"versions_from_parentdir" |
|
] |
|
] |
|
], |
|
"git_get_keywords": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"git_get_keywords" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"git_get_keywords" |
|
] |
|
] |
|
], |
|
"git_versions_from_keywords": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"git_versions_from_keywords" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"git_versions_from_keywords" |
|
] |
|
] |
|
], |
|
"git_pieces_from_vcs": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"git_pieces_from_vcs" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"git_pieces_from_vcs" |
|
] |
|
] |
|
], |
|
"plus_or_dot": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"plus_or_dot" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"plus_or_dot" |
|
] |
|
] |
|
], |
|
"render_pep440": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render_pep440" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render_pep440" |
|
] |
|
] |
|
], |
|
"render_pep440_pre": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render_pep440_pre" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render_pep440_pre" |
|
] |
|
] |
|
], |
|
"render_pep440_post": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render_pep440_post" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render_pep440_post" |
|
] |
|
] |
|
], |
|
"render_pep440_old": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render_pep440_old" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render_pep440_old" |
|
] |
|
] |
|
], |
|
"render_git_describe": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render_git_describe" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render_git_describe" |
|
] |
|
] |
|
], |
|
"render_git_describe_long": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render_git_describe_long" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render_git_describe_long" |
|
] |
|
] |
|
], |
|
"render": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"render" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"render" |
|
] |
|
] |
|
], |
|
"get_versions": [ |
|
[ |
|
"monai/_version.py", |
|
[ |
|
"get_versions" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_versions" |
|
] |
|
] |
|
], |
|
"randomize": [ |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"MedNISTDataset", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"DecathlonDataset", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"ArrayDataset", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/data/nifti_reader.py", |
|
[ |
|
"NiftiDataset", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"Randomizable", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"Compose", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandSpatialCrop", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandSpatialCropSamples", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandCropByPosNegLabel", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandSpatialCropd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandSpatialCropSamplesd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandCropByPosNegLabeld", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandGaussianNoise", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandShiftIntensity", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandScaleIntensity", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandAdjustContrast", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandGaussianSmooth", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandGaussianSharpen", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandHistogramShift", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandGaussianNoised", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandShiftIntensityd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandScaleIntensityd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandAdjustContrastd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandGaussianSmoothd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandGaussianSharpend", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandHistogramShiftd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandRotate90", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandRotate", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandFlip", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandZoom", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandAffineGrid", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandDeformGrid", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandAffine", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rand2DElastic", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rand3DElastic", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandRotate90d", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandAffined", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rand2DElasticd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rand3DElasticd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandFlipd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandRotated", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandZoomd", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"_RandXform", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_random_compose", |
|
"_Acc", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_randomize_warn", |
|
"_RandomClass", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"tests/test_nifti_dataset.py", |
|
[ |
|
"RandTest", |
|
"randomize" |
|
] |
|
], |
|
[ |
|
"tests/test_randomizable.py", |
|
[ |
|
"RandTest", |
|
"randomize" |
|
] |
|
] |
|
], |
|
"_generate_data_list": [ |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"MedNISTDataset", |
|
"_generate_data_list" |
|
] |
|
], |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"DecathlonDataset", |
|
"_generate_data_list" |
|
] |
|
] |
|
], |
|
"get_indices": [ |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"DecathlonDataset", |
|
"get_indices" |
|
] |
|
] |
|
], |
|
"get_properties": [ |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"DecathlonDataset", |
|
"get_properties" |
|
] |
|
] |
|
], |
|
"_split_datalist": [ |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"DecathlonDataset", |
|
"_split_datalist" |
|
] |
|
], |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"CVDecathlonDataset", |
|
"get_dataset", |
|
"_NsplitsDataset", |
|
"_split_datalist" |
|
] |
|
] |
|
], |
|
"get_dataset": [ |
|
[ |
|
"monai/apps/datasets.py", |
|
[ |
|
"CVDecathlonDataset", |
|
"get_dataset" |
|
] |
|
] |
|
], |
|
"check_hash": [ |
|
[ |
|
"monai/apps/utils.py", |
|
[ |
|
"check_hash" |
|
] |
|
] |
|
], |
|
"update_to": [ |
|
[ |
|
"monai/apps/utils.py", |
|
[ |
|
"download_url", |
|
"if_url_startswith_https_", |
|
"else_", |
|
"try_", |
|
"if_has_tqdm_", |
|
"TqdmUpTo", |
|
"update_to" |
|
] |
|
] |
|
], |
|
"download_url": [ |
|
[ |
|
"monai/apps/utils.py", |
|
[ |
|
"download_url" |
|
] |
|
] |
|
], |
|
"extractall": [ |
|
[ |
|
"monai/apps/utils.py", |
|
[ |
|
"extractall" |
|
] |
|
] |
|
], |
|
"download_and_extract": [ |
|
[ |
|
"monai/apps/utils.py", |
|
[ |
|
"download_and_extract" |
|
] |
|
] |
|
], |
|
"split_dataset": [ |
|
[ |
|
"monai/apps/utils.py", |
|
[ |
|
"split_dataset" |
|
] |
|
] |
|
], |
|
"get_config_values": [ |
|
[ |
|
"monai/config/deviceconfig.py", |
|
[ |
|
"get_config_values" |
|
] |
|
] |
|
], |
|
"get_optional_config_values": [ |
|
[ |
|
"monai/config/deviceconfig.py", |
|
[ |
|
"get_optional_config_values" |
|
] |
|
] |
|
], |
|
"print_config": [ |
|
[ |
|
"monai/config/deviceconfig.py", |
|
[ |
|
"print_config" |
|
] |
|
] |
|
], |
|
"set_visible_devices": [ |
|
[ |
|
"monai/config/deviceconfig.py", |
|
[ |
|
"set_visible_devices" |
|
] |
|
] |
|
], |
|
"get_torch_version_tuple": [ |
|
[ |
|
"monai/config/deviceconfig.py", |
|
[ |
|
"get_torch_version_tuple" |
|
] |
|
] |
|
], |
|
"finalize": [ |
|
[ |
|
"monai/data/csv_saver.py", |
|
[ |
|
"CSVSaver", |
|
"finalize" |
|
] |
|
] |
|
], |
|
"save": [ |
|
[ |
|
"monai/data/csv_saver.py", |
|
[ |
|
"CSVSaver", |
|
"save" |
|
] |
|
], |
|
[ |
|
"monai/data/nifti_saver.py", |
|
[ |
|
"NiftiSaver", |
|
"save" |
|
] |
|
], |
|
[ |
|
"monai/data/png_saver.py", |
|
[ |
|
"PNGSaver", |
|
"save" |
|
] |
|
] |
|
], |
|
"save_batch": [ |
|
[ |
|
"monai/data/csv_saver.py", |
|
[ |
|
"CSVSaver", |
|
"save_batch" |
|
] |
|
], |
|
[ |
|
"monai/data/nifti_saver.py", |
|
[ |
|
"NiftiSaver", |
|
"save_batch" |
|
] |
|
], |
|
[ |
|
"monai/data/png_saver.py", |
|
[ |
|
"PNGSaver", |
|
"save_batch" |
|
] |
|
] |
|
], |
|
"__len__": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"Dataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"ZipDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"ArrayDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"monai/data/grid_dataset.py", |
|
[ |
|
"PatchDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"monai/data/nifti_reader.py", |
|
[ |
|
"NiftiDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"tests/test_ensemble_evaluator.py", |
|
[ |
|
"TestEnsembleEvaluator", |
|
"test_content", |
|
"TestDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"MedNISTDataset", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_determinism.py", |
|
[ |
|
"run_test", |
|
"_TestBatch", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_unet_2d.py", |
|
[ |
|
"run_test", |
|
"_TestBatch", |
|
"__len__" |
|
] |
|
], |
|
[ |
|
"tests/test_zipdataset.py", |
|
[ |
|
"Dataset_", |
|
"__len__" |
|
] |
|
] |
|
], |
|
"__getitem__": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"Dataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"PersistentDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"CacheDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"ZipDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"ArrayDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/data/grid_dataset.py", |
|
[ |
|
"PatchDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/data/nifti_reader.py", |
|
[ |
|
"NiftiDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"tests/test_ensemble_evaluator.py", |
|
[ |
|
"TestEnsembleEvaluator", |
|
"test_content", |
|
"TestDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"MedNISTDataset", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_determinism.py", |
|
[ |
|
"run_test", |
|
"_TestBatch", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_unet_2d.py", |
|
[ |
|
"run_test", |
|
"_TestBatch", |
|
"__getitem__" |
|
] |
|
], |
|
[ |
|
"tests/test_zipdataset.py", |
|
[ |
|
"Dataset_", |
|
"__getitem__" |
|
] |
|
] |
|
], |
|
"_pre_first_random_transform": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"PersistentDataset", |
|
"_pre_first_random_transform" |
|
] |
|
] |
|
], |
|
"_first_random_and_beyond_transform": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"PersistentDataset", |
|
"_first_random_and_beyond_transform" |
|
] |
|
] |
|
], |
|
"_pre_first_random_cachecheck": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"PersistentDataset", |
|
"_pre_first_random_cachecheck" |
|
] |
|
] |
|
], |
|
"_load_cache_item": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"CacheDataset", |
|
"_load_cache_item" |
|
] |
|
] |
|
], |
|
"_load_cache_item_thread": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"CacheDataset", |
|
"_load_cache_item_thread" |
|
] |
|
] |
|
], |
|
"_compute_data_idx": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_compute_data_idx" |
|
] |
|
] |
|
], |
|
"is_started": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"is_started" |
|
] |
|
] |
|
], |
|
"start": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"start" |
|
] |
|
] |
|
], |
|
"_restart": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_restart" |
|
] |
|
] |
|
], |
|
"_try_update_cache": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_try_update_cache" |
|
] |
|
] |
|
], |
|
"update_cache": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"update_cache" |
|
] |
|
] |
|
], |
|
"_try_shutdown": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_try_shutdown" |
|
] |
|
] |
|
], |
|
"shutdown": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"shutdown" |
|
] |
|
] |
|
], |
|
"_replace_cache_thread": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_replace_cache_thread" |
|
] |
|
] |
|
], |
|
"_compute_replacements": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_compute_replacements" |
|
] |
|
] |
|
], |
|
"_try_manage_replacement": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"_try_manage_replacement" |
|
] |
|
] |
|
], |
|
"manage_replacement": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"SmartCacheDataset", |
|
"manage_replacement" |
|
] |
|
] |
|
], |
|
"to_list": [ |
|
[ |
|
"monai/data/dataset.py", |
|
[ |
|
"ZipDataset", |
|
"__getitem__", |
|
"to_list" |
|
] |
|
] |
|
], |
|
"_compute_path": [ |
|
[ |
|
"monai/data/decathlon_datalist.py", |
|
[ |
|
"_compute_path" |
|
] |
|
] |
|
], |
|
"_compute_path_1": [ |
|
[ |
|
"monai/data/decathlon_datalist.py", |
|
[ |
|
"_compute_path_1" |
|
] |
|
] |
|
], |
|
"_compute_path_2": [ |
|
[ |
|
"monai/data/decathlon_datalist.py", |
|
[ |
|
"_compute_path_2" |
|
] |
|
] |
|
], |
|
"_append_paths": [ |
|
[ |
|
"monai/data/decathlon_datalist.py", |
|
[ |
|
"_append_paths" |
|
] |
|
] |
|
], |
|
"load_decathlon_datalist": [ |
|
[ |
|
"monai/data/decathlon_datalist.py", |
|
[ |
|
"load_decathlon_datalist" |
|
] |
|
] |
|
], |
|
"load_decathlon_properties": [ |
|
[ |
|
"monai/data/decathlon_datalist.py", |
|
[ |
|
"load_decathlon_properties" |
|
] |
|
] |
|
], |
|
"__iter__": [ |
|
[ |
|
"monai/data/grid_dataset.py", |
|
[ |
|
"GridPatchDataset", |
|
"__iter__" |
|
] |
|
], |
|
[ |
|
"monai/utils/decorators.py", |
|
[ |
|
"RestartGenerator", |
|
"__iter__" |
|
] |
|
] |
|
], |
|
"verify_suffix": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ImageReader", |
|
"verify_suffix" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"verify_suffix" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"verify_suffix" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NumpyReader", |
|
"verify_suffix" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"PILReader", |
|
"verify_suffix" |
|
] |
|
] |
|
], |
|
"read": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ImageReader", |
|
"read" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"read" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"read" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NumpyReader", |
|
"read" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"PILReader", |
|
"read" |
|
] |
|
] |
|
], |
|
"get_data": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ImageReader", |
|
"get_data" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"get_data" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"get_data" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NumpyReader", |
|
"get_data" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"PILReader", |
|
"get_data" |
|
] |
|
] |
|
], |
|
"_get_meta_dict": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"_get_meta_dict" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"_get_meta_dict" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"PILReader", |
|
"_get_meta_dict" |
|
] |
|
] |
|
], |
|
"_get_affine": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"_get_affine" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"_get_affine" |
|
] |
|
] |
|
], |
|
"_get_spatial_shape": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"_get_spatial_shape" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"_get_spatial_shape" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"PILReader", |
|
"_get_spatial_shape" |
|
] |
|
] |
|
], |
|
"_get_array_data": [ |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"ITKReader", |
|
"_get_array_data" |
|
] |
|
], |
|
[ |
|
"monai/data/image_reader.py", |
|
[ |
|
"NibabelReader", |
|
"_get_array_data" |
|
] |
|
] |
|
], |
|
"write_nifti": [ |
|
[ |
|
"monai/data/nifti_writer.py", |
|
[ |
|
"write_nifti" |
|
] |
|
] |
|
], |
|
"write_png": [ |
|
[ |
|
"monai/data/png_writer.py", |
|
[ |
|
"write_png" |
|
] |
|
] |
|
], |
|
"create_test_image_2d": [ |
|
[ |
|
"monai/data/synthetic.py", |
|
[ |
|
"create_test_image_2d" |
|
] |
|
] |
|
], |
|
"create_test_image_3d": [ |
|
[ |
|
"monai/data/synthetic.py", |
|
[ |
|
"create_test_image_3d" |
|
] |
|
] |
|
], |
|
"get_random_patch": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"get_random_patch" |
|
] |
|
] |
|
], |
|
"iter_patch_slices": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"iter_patch_slices" |
|
] |
|
] |
|
], |
|
"dense_patch_slices": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"dense_patch_slices" |
|
] |
|
] |
|
], |
|
"iter_patch": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"iter_patch" |
|
] |
|
] |
|
], |
|
"get_valid_patch_size": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"get_valid_patch_size" |
|
] |
|
] |
|
], |
|
"list_data_collate": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"list_data_collate" |
|
] |
|
] |
|
], |
|
"worker_init_fn": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"worker_init_fn" |
|
] |
|
] |
|
], |
|
"set_rnd": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"set_rnd" |
|
] |
|
] |
|
], |
|
"correct_nifti_header_if_necessary": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"correct_nifti_header_if_necessary" |
|
] |
|
] |
|
], |
|
"rectify_header_sform_qform": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"rectify_header_sform_qform" |
|
] |
|
] |
|
], |
|
"zoom_affine": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"zoom_affine" |
|
] |
|
] |
|
], |
|
"compute_shape_offset": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"compute_shape_offset" |
|
] |
|
] |
|
], |
|
"to_affine_nd": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"to_affine_nd" |
|
] |
|
] |
|
], |
|
"create_file_basename": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"create_file_basename" |
|
] |
|
] |
|
], |
|
"compute_importance_map": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"compute_importance_map" |
|
] |
|
] |
|
], |
|
"is_supported_format": [ |
|
[ |
|
"monai/data/utils.py", |
|
[ |
|
"is_supported_format" |
|
] |
|
] |
|
], |
|
"run": [ |
|
[ |
|
"monai/engines/evaluator.py", |
|
[ |
|
"Evaluator", |
|
"run" |
|
] |
|
], |
|
[ |
|
"monai/engines/trainer.py", |
|
[ |
|
"Trainer", |
|
"run" |
|
] |
|
], |
|
[ |
|
"monai/engines/workflow.py", |
|
[ |
|
"Workflow", |
|
"run" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"cmd_version", |
|
"run" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"cmd_build_py", |
|
"run" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"if_cx_Freeze_in_sys_mod", |
|
"cmd_build_exe", |
|
"run" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"if_py2exe_in_sys_module", |
|
"cmd_py2exe", |
|
"run" |
|
] |
|
], |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"cmd_sdist", |
|
"run" |
|
] |
|
] |
|
], |
|
"get_validation_stats": [ |
|
[ |
|
"monai/engines/evaluator.py", |
|
[ |
|
"Evaluator", |
|
"get_validation_stats" |
|
] |
|
] |
|
], |
|
"_iteration": [ |
|
[ |
|
"monai/engines/evaluator.py", |
|
[ |
|
"SupervisedEvaluator", |
|
"_iteration" |
|
] |
|
], |
|
[ |
|
"monai/engines/evaluator.py", |
|
[ |
|
"EnsembleEvaluator", |
|
"_iteration" |
|
] |
|
], |
|
[ |
|
"monai/engines/trainer.py", |
|
[ |
|
"SupervisedTrainer", |
|
"_iteration" |
|
] |
|
], |
|
[ |
|
"monai/engines/trainer.py", |
|
[ |
|
"GanTrainer", |
|
"_iteration" |
|
] |
|
], |
|
[ |
|
"monai/engines/workflow.py", |
|
[ |
|
"Workflow", |
|
"_iteration" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_validation.py", |
|
[ |
|
"TestEvaluator", |
|
"_iteration" |
|
] |
|
] |
|
], |
|
"_default_transform": [ |
|
[ |
|
"monai/engines/multi_gpu_supervised_trainer.py", |
|
[ |
|
"_default_transform" |
|
] |
|
] |
|
], |
|
"_default_eval_transform": [ |
|
[ |
|
"monai/engines/multi_gpu_supervised_trainer.py", |
|
[ |
|
"_default_eval_transform" |
|
] |
|
] |
|
], |
|
"create_multigpu_supervised_trainer": [ |
|
[ |
|
"monai/engines/multi_gpu_supervised_trainer.py", |
|
[ |
|
"create_multigpu_supervised_trainer" |
|
] |
|
] |
|
], |
|
"create_multigpu_supervised_evaluator": [ |
|
[ |
|
"monai/engines/multi_gpu_supervised_trainer.py", |
|
[ |
|
"create_multigpu_supervised_evaluator" |
|
] |
|
] |
|
], |
|
"get_train_stats": [ |
|
[ |
|
"monai/engines/trainer.py", |
|
[ |
|
"Trainer", |
|
"get_train_stats" |
|
] |
|
] |
|
], |
|
"get_devices_spec": [ |
|
[ |
|
"monai/engines/utils.py", |
|
[ |
|
"get_devices_spec" |
|
] |
|
] |
|
], |
|
"default_prepare_batch": [ |
|
[ |
|
"monai/engines/utils.py", |
|
[ |
|
"default_prepare_batch" |
|
] |
|
] |
|
], |
|
"default_make_latent": [ |
|
[ |
|
"monai/engines/utils.py", |
|
[ |
|
"default_make_latent" |
|
] |
|
] |
|
], |
|
"set_sampler_epoch": [ |
|
[ |
|
"monai/engines/workflow.py", |
|
[ |
|
"Workflow", |
|
"__init__", |
|
"if_isinstance_sampler_Di", |
|
"set_sampler_epoch" |
|
] |
|
] |
|
], |
|
"run_post_transform": [ |
|
[ |
|
"monai/engines/workflow.py", |
|
[ |
|
"Workflow", |
|
"__init__", |
|
"if_post_transform_is_not_", |
|
"run_post_transform" |
|
] |
|
], |
|
[ |
|
"tests/test_ensemble_evaluator.py", |
|
[ |
|
"TestEnsembleEvaluator", |
|
"test_content", |
|
"run_post_transform" |
|
] |
|
] |
|
], |
|
"_compare_metrics": [ |
|
[ |
|
"monai/engines/workflow.py", |
|
[ |
|
"Workflow", |
|
"__init__", |
|
"if_key_metric_is_not_None", |
|
"_compare_metrics" |
|
] |
|
] |
|
], |
|
"attach": [ |
|
[ |
|
"monai/handlers/checkpoint_loader.py", |
|
[ |
|
"CheckpointLoader", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/classification_saver.py", |
|
[ |
|
"ClassificationSaver", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/lr_schedule_handler.py", |
|
[ |
|
"LrScheduleHandler", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/metric_logger.py", |
|
[ |
|
"MetricLogger", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/segmentation_saver.py", |
|
[ |
|
"SegmentationSaver", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/smartcache_handler.py", |
|
[ |
|
"SmartCacheHandler", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/stats_handler.py", |
|
[ |
|
"StatsHandler", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardStatsHandler", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardImageHandler", |
|
"attach" |
|
] |
|
], |
|
[ |
|
"monai/handlers/validation_handler.py", |
|
[ |
|
"ValidationHandler", |
|
"attach" |
|
] |
|
] |
|
], |
|
"__call__": [ |
|
[ |
|
"monai/handlers/checkpoint_loader.py", |
|
[ |
|
"CheckpointLoader", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/handlers/classification_saver.py", |
|
[ |
|
"ClassificationSaver", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/handlers/lr_schedule_handler.py", |
|
[ |
|
"LrScheduleHandler", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/handlers/metric_logger.py", |
|
[ |
|
"MetricLogger", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/handlers/segmentation_saver.py", |
|
[ |
|
"SegmentationSaver", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardImageHandler", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/handlers/validation_handler.py", |
|
[ |
|
"ValidationHandler", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/inferers/inferer.py", |
|
[ |
|
"Inferer", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/inferers/inferer.py", |
|
[ |
|
"SimpleInferer", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/inferers/inferer.py", |
|
[ |
|
"SlidingWindowInferer", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/metrics/meandice.py", |
|
[ |
|
"DiceMetric", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"Transform", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"Compose", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"MapTransform", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"SpatialPad", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"BorderPad", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"DivisiblePad", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"SpatialCrop", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"CenterSpatialCrop", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandSpatialCrop", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandSpatialCropSamples", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"CropForeground", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandCropByPosNegLabel", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"ResizeWithPadOrCrop", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"SpatialPadd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"BorderPadd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"DivisiblePadd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"SpatialCropd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"CenterSpatialCropd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandSpatialCropd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandSpatialCropSamplesd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"CropForegroundd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandCropByPosNegLabeld", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"ResizeWithPadOrCropd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandGaussianNoise", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"ShiftIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandShiftIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"ScaleIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandScaleIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"NormalizeIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"ThresholdIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"ScaleIntensityRange", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"AdjustContrast", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandAdjustContrast", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"ScaleIntensityRangePercentiles", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"MaskIntensity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"GaussianSmooth", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandGaussianSmooth", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"GaussianSharpen", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandGaussianSharpen", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"RandHistogramShift", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandGaussianNoised", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"ShiftIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandShiftIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"ScaleIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandScaleIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"NormalizeIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"ThresholdIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"ScaleIntensityRanged", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"AdjustContrastd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandAdjustContrastd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"ScaleIntensityRangePercentilesd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"MaskIntensityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"GaussianSmoothd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandGaussianSmoothd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"GaussianSharpend", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandGaussianSharpend", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/intensity/dictionary.py", |
|
[ |
|
"RandHistogramShiftd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/array.py", |
|
[ |
|
"LoadImage", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/array.py", |
|
[ |
|
"LoadNifti", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/array.py", |
|
[ |
|
"LoadPNG", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/array.py", |
|
[ |
|
"LoadNumpy", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/dictionary.py", |
|
[ |
|
"LoadImaged", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/dictionary.py", |
|
[ |
|
"LoadDatad", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"SplitChannel", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"Activations", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"AsDiscrete", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"KeepLargestConnectedComponent", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"LabelToContour", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"MeanEnsemble", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/array.py", |
|
[ |
|
"VoteEnsemble", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/dictionary.py", |
|
[ |
|
"SplitChanneld", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/dictionary.py", |
|
[ |
|
"Activationsd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/dictionary.py", |
|
[ |
|
"AsDiscreted", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/dictionary.py", |
|
[ |
|
"KeepLargestConnectedComponentd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/dictionary.py", |
|
[ |
|
"LabelToContourd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/post/dictionary.py", |
|
[ |
|
"Ensembled", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Spacing", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Orientation", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Flip", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Resize", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rotate", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Zoom", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rotate90", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandRotate90", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandRotate", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandFlip", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandZoom", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"AffineGrid", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandAffineGrid", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandDeformGrid", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Resample", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Affine", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandAffine", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rand2DElastic", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rand3DElastic", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Spacingd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Orientationd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rotate90d", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandRotate90d", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Resized", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandAffined", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rand2DElasticd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rand3DElasticd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Flipd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandFlipd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rotated", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandRotated", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Zoomd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandZoomd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"Identity", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"AsChannelFirst", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"AsChannelLast", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"AddChannel", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"RepeatChannel", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"CastToType", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"ToTensor", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"ToNumpy", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"Transpose", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"SqueezeDim", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"DataStats", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"SimulateDelay", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"Lambda", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"LabelToMask", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/array.py", |
|
[ |
|
"FgBgToIndices", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"Identityd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"AsChannelFirstd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"AsChannelLastd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"AddChanneld", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"RepeatChanneld", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"CastToTyped", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"ToTensord", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"ToNumpyd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"DeleteItemsd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"SqueezeDimd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"DataStatsd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"SimulateDelayd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"CopyItemsd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"ConcatItemsd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"Lambdad", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"LabelToMaskd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/transforms/utility/dictionary.py", |
|
[ |
|
"FgBgToIndicesd", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"optional_import", |
|
"_LazyRaise", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"tests/test_arraydataset.py", |
|
[ |
|
"TestCompose", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"_RandXform", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_random_compose", |
|
"_Acc", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"tests/test_map_transform.py", |
|
[ |
|
"MapTest", |
|
"__call__" |
|
] |
|
], |
|
[ |
|
"tests/test_nifti_dataset.py", |
|
[ |
|
"RandTest", |
|
"__call__" |
|
] |
|
] |
|
], |
|
"_final_func": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"__init__", |
|
"if_save_final_", |
|
"_final_func" |
|
] |
|
] |
|
], |
|
"_score_func": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"__init__", |
|
"if_save_key_metric_", |
|
"_score_func" |
|
] |
|
] |
|
], |
|
"_interval_func": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"__init__", |
|
"if_save_interval_0_", |
|
"_interval_func" |
|
] |
|
] |
|
], |
|
"completed": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"completed" |
|
] |
|
], |
|
[ |
|
"monai/handlers/smartcache_handler.py", |
|
[ |
|
"SmartCacheHandler", |
|
"completed" |
|
] |
|
] |
|
], |
|
"exception_raised": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"exception_raised" |
|
] |
|
], |
|
[ |
|
"monai/handlers/stats_handler.py", |
|
[ |
|
"StatsHandler", |
|
"exception_raised" |
|
] |
|
] |
|
], |
|
"metrics_completed": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"metrics_completed" |
|
] |
|
] |
|
], |
|
"interval_completed": [ |
|
[ |
|
"monai/handlers/checkpoint_saver.py", |
|
[ |
|
"CheckpointSaver", |
|
"interval_completed" |
|
] |
|
] |
|
], |
|
"reset": [ |
|
[ |
|
"monai/handlers/mean_dice.py", |
|
[ |
|
"MeanDice", |
|
"reset" |
|
] |
|
], |
|
[ |
|
"monai/handlers/roc_auc.py", |
|
[ |
|
"ROCAUC", |
|
"reset" |
|
] |
|
] |
|
], |
|
"update": [ |
|
[ |
|
"monai/handlers/mean_dice.py", |
|
[ |
|
"MeanDice", |
|
"update" |
|
] |
|
], |
|
[ |
|
"monai/handlers/roc_auc.py", |
|
[ |
|
"ROCAUC", |
|
"update" |
|
] |
|
] |
|
], |
|
"compute": [ |
|
[ |
|
"monai/handlers/mean_dice.py", |
|
[ |
|
"MeanDice", |
|
"compute" |
|
] |
|
], |
|
[ |
|
"monai/handlers/roc_auc.py", |
|
[ |
|
"ROCAUC", |
|
"compute" |
|
] |
|
], |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_sliding_window_default", |
|
"compute" |
|
] |
|
], |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_default_device", |
|
"compute" |
|
] |
|
], |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_sigma", |
|
"_Pred", |
|
"compute" |
|
] |
|
], |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_cval", |
|
"compute" |
|
] |
|
] |
|
], |
|
"started": [ |
|
[ |
|
"monai/handlers/smartcache_handler.py", |
|
[ |
|
"SmartCacheHandler", |
|
"started" |
|
] |
|
] |
|
], |
|
"epoch_completed": [ |
|
[ |
|
"monai/handlers/smartcache_handler.py", |
|
[ |
|
"SmartCacheHandler", |
|
"epoch_completed" |
|
] |
|
], |
|
[ |
|
"monai/handlers/stats_handler.py", |
|
[ |
|
"StatsHandler", |
|
"epoch_completed" |
|
] |
|
], |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardStatsHandler", |
|
"epoch_completed" |
|
] |
|
] |
|
], |
|
"iteration_completed": [ |
|
[ |
|
"monai/handlers/stats_handler.py", |
|
[ |
|
"StatsHandler", |
|
"iteration_completed" |
|
] |
|
], |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardStatsHandler", |
|
"iteration_completed" |
|
] |
|
] |
|
], |
|
"_default_epoch_print": [ |
|
[ |
|
"monai/handlers/stats_handler.py", |
|
[ |
|
"StatsHandler", |
|
"_default_epoch_print" |
|
] |
|
] |
|
], |
|
"_default_iteration_print": [ |
|
[ |
|
"monai/handlers/stats_handler.py", |
|
[ |
|
"StatsHandler", |
|
"_default_iteration_print" |
|
] |
|
] |
|
], |
|
"_default_epoch_writer": [ |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardStatsHandler", |
|
"_default_epoch_writer" |
|
] |
|
] |
|
], |
|
"_default_iteration_writer": [ |
|
[ |
|
"monai/handlers/tensorboard_handlers.py", |
|
[ |
|
"TensorBoardStatsHandler", |
|
"_default_iteration_writer" |
|
] |
|
] |
|
], |
|
"stopping_fn": [ |
|
[ |
|
"monai/handlers/utils.py", |
|
[ |
|
"stopping_fn_from_metric", |
|
"stopping_fn" |
|
] |
|
], |
|
[ |
|
"monai/handlers/utils.py", |
|
[ |
|
"stopping_fn_from_loss", |
|
"stopping_fn" |
|
] |
|
] |
|
], |
|
"stopping_fn_from_metric": [ |
|
[ |
|
"monai/handlers/utils.py", |
|
[ |
|
"stopping_fn_from_metric" |
|
] |
|
] |
|
], |
|
"stopping_fn_from_loss": [ |
|
[ |
|
"monai/handlers/utils.py", |
|
[ |
|
"stopping_fn_from_loss" |
|
] |
|
] |
|
], |
|
"sliding_window_inference": [ |
|
[ |
|
"monai/inferers/utils.py", |
|
[ |
|
"sliding_window_inference" |
|
] |
|
] |
|
], |
|
"_get_scan_interval": [ |
|
[ |
|
"monai/inferers/utils.py", |
|
[ |
|
"_get_scan_interval" |
|
] |
|
] |
|
], |
|
"forward": [ |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"DiceLoss", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"MaskedDiceLoss", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"GeneralizedDiceLoss", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"GeneralizedWassersteinDiceLoss", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/losses/focal_loss.py", |
|
[ |
|
"FocalLoss", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/losses/tversky.py", |
|
[ |
|
"TverskyLoss", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/aspp.py", |
|
[ |
|
"SimpleASPP", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/convolutions.py", |
|
[ |
|
"ResidualUnit", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/downsample.py", |
|
[ |
|
"MaxAvgPool", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"UnetResBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"UnetBasicBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"UnetUpBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"UnetOutBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/fcn.py", |
|
[ |
|
"GCN", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/fcn.py", |
|
[ |
|
"Refine", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/fcn.py", |
|
[ |
|
"FCN", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/fcn.py", |
|
[ |
|
"MCFCN", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/segresnet_block.py", |
|
[ |
|
"ResBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/squeeze_and_excitation.py", |
|
[ |
|
"ChannelSELayer", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/squeeze_and_excitation.py", |
|
[ |
|
"ResidualSELayer", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/squeeze_and_excitation.py", |
|
[ |
|
"SEBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/upsample.py", |
|
[ |
|
"SubpixelUpsample", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"SkipConnection", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"Flatten", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"Reshape", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"GaussianFilter", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"LLTMFunction", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"LLTM", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridPull", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridPush", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridCount", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridGrad", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"AffineTransform", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"Bottleneck3x3x1", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"Pseudo3DLayer", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"PSP", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"AHNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/classifier.py", |
|
[ |
|
"Critic", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"_DenseLayer", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"DenseNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/generator.py", |
|
[ |
|
"Generator", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/highresnet.py", |
|
[ |
|
"ConvNormActi", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/highresnet.py", |
|
[ |
|
"HighResBlock", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/highresnet.py", |
|
[ |
|
"HighResNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/regressor.py", |
|
[ |
|
"Regressor", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/unet.py", |
|
[ |
|
"UNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"LUConv", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"InputTransition", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"DownTransition", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"UpTransition", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"OutputTransition", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"VNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"tests/test_ensemble_evaluator.py", |
|
[ |
|
"TestEnsembleEvaluator", |
|
"test_content", |
|
"TestNet", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"STNBenchmark", |
|
"forward" |
|
] |
|
], |
|
[ |
|
"tests/test_seg_loss_integration.py", |
|
[ |
|
"TestSegLossIntegration", |
|
"test_convergence", |
|
"OnelayerNet", |
|
"forward" |
|
] |
|
] |
|
], |
|
"wasserstein_distance_map": [ |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"GeneralizedWassersteinDiceLoss", |
|
"wasserstein_distance_map" |
|
] |
|
] |
|
], |
|
"compute_generalized_true_positive": [ |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"GeneralizedWassersteinDiceLoss", |
|
"compute_generalized_true_positive" |
|
] |
|
] |
|
], |
|
"compute_denominator": [ |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"GeneralizedWassersteinDiceLoss", |
|
"compute_denominator" |
|
] |
|
] |
|
], |
|
"compute_weights_generalized_true_positives": [ |
|
[ |
|
"monai/losses/dice.py", |
|
[ |
|
"GeneralizedWassersteinDiceLoss", |
|
"compute_weights_generalized_true_positives" |
|
] |
|
] |
|
], |
|
"compute_confusion_metric": [ |
|
[ |
|
"monai/metrics/confusion_matrix.py", |
|
[ |
|
"compute_confusion_metric" |
|
] |
|
] |
|
], |
|
"do_activation": [ |
|
[ |
|
"monai/metrics/confusion_matrix_utils.py", |
|
[ |
|
"do_activation" |
|
] |
|
] |
|
], |
|
"do_binarization": [ |
|
[ |
|
"monai/metrics/confusion_matrix_utils.py", |
|
[ |
|
"do_binarization" |
|
] |
|
] |
|
], |
|
"cal_confusion_matrix_elements": [ |
|
[ |
|
"monai/metrics/confusion_matrix_utils.py", |
|
[ |
|
"cal_confusion_matrix_elements" |
|
] |
|
] |
|
], |
|
"handle_zero_divide": [ |
|
[ |
|
"monai/metrics/confusion_matrix_utils.py", |
|
[ |
|
"handle_zero_divide" |
|
] |
|
] |
|
], |
|
"do_calculate_metric": [ |
|
[ |
|
"monai/metrics/confusion_matrix_utils.py", |
|
[ |
|
"do_calculate_metric" |
|
] |
|
] |
|
], |
|
"check_metric_name_and_unify": [ |
|
[ |
|
"monai/metrics/confusion_matrix_utils.py", |
|
[ |
|
"check_metric_name_and_unify" |
|
] |
|
] |
|
], |
|
"compute_hausdorff_distance": [ |
|
[ |
|
"monai/metrics/hausdorff_distance.py", |
|
[ |
|
"compute_hausdorff_distance" |
|
] |
|
] |
|
], |
|
"compute_percent_hausdorff_distance": [ |
|
[ |
|
"monai/metrics/hausdorff_distance.py", |
|
[ |
|
"compute_percent_hausdorff_distance" |
|
] |
|
] |
|
], |
|
"compute_meandice": [ |
|
[ |
|
"monai/metrics/meandice.py", |
|
[ |
|
"compute_meandice" |
|
] |
|
] |
|
], |
|
"_calculate": [ |
|
[ |
|
"monai/metrics/rocauc.py", |
|
[ |
|
"_calculate" |
|
] |
|
] |
|
], |
|
"compute_roc_auc": [ |
|
[ |
|
"monai/metrics/rocauc.py", |
|
[ |
|
"compute_roc_auc" |
|
] |
|
] |
|
], |
|
"compute_average_surface_distance": [ |
|
[ |
|
"monai/metrics/surface_distance.py", |
|
[ |
|
"compute_average_surface_distance" |
|
] |
|
] |
|
], |
|
"get_mask_edges": [ |
|
[ |
|
"monai/metrics/utils.py", |
|
[ |
|
"get_mask_edges" |
|
] |
|
] |
|
], |
|
"get_surface_distance": [ |
|
[ |
|
"monai/metrics/utils.py", |
|
[ |
|
"get_surface_distance" |
|
] |
|
] |
|
], |
|
"get_acti_layer": [ |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"get_acti_layer" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"get_acti_layer" |
|
] |
|
] |
|
], |
|
"get_norm_layer": [ |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"get_norm_layer" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/segresnet_block.py", |
|
[ |
|
"get_norm_layer" |
|
] |
|
] |
|
], |
|
"get_conv_layer": [ |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"get_conv_layer" |
|
] |
|
], |
|
[ |
|
"monai/networks/blocks/segresnet_block.py", |
|
[ |
|
"get_conv_layer" |
|
] |
|
] |
|
], |
|
"get_padding": [ |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"get_padding" |
|
] |
|
] |
|
], |
|
"get_output_padding": [ |
|
[ |
|
"monai/networks/blocks/dynunet_block.py", |
|
[ |
|
"get_output_padding" |
|
] |
|
] |
|
], |
|
"get_upsample_layer": [ |
|
[ |
|
"monai/networks/blocks/segresnet_block.py", |
|
[ |
|
"get_upsample_layer" |
|
] |
|
] |
|
], |
|
"same_padding": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"same_padding" |
|
] |
|
] |
|
], |
|
"stride_minus_kernel_padding": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"stride_minus_kernel_padding" |
|
] |
|
] |
|
], |
|
"calculate_out_shape": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"calculate_out_shape" |
|
] |
|
] |
|
], |
|
"gaussian_1d": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"gaussian_1d" |
|
] |
|
] |
|
], |
|
"polyval": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"polyval" |
|
] |
|
] |
|
], |
|
"_modified_bessel_0": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"_modified_bessel_0" |
|
] |
|
] |
|
], |
|
"_modified_bessel_1": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"_modified_bessel_1" |
|
] |
|
] |
|
], |
|
"_modified_bessel_i": [ |
|
[ |
|
"monai/networks/layers/convutils.py", |
|
[ |
|
"_modified_bessel_i" |
|
] |
|
] |
|
], |
|
"names": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"names" |
|
] |
|
] |
|
], |
|
"add_factory_callable": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"add_factory_callable" |
|
] |
|
] |
|
], |
|
"_add": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"factory_function", |
|
"_add" |
|
] |
|
] |
|
], |
|
"factory_function": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"factory_function" |
|
] |
|
] |
|
], |
|
"get_constructor": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"get_constructor" |
|
] |
|
] |
|
], |
|
"__getattr__": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"LayerFactory", |
|
"__getattr__" |
|
] |
|
], |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"optional_import", |
|
"_LazyRaise", |
|
"__getattr__" |
|
] |
|
] |
|
], |
|
"split_args": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"split_args" |
|
] |
|
] |
|
], |
|
"dropout_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"dropout_factory" |
|
] |
|
] |
|
], |
|
"instance_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"instance_factory" |
|
] |
|
] |
|
], |
|
"batch_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"batch_factory" |
|
] |
|
] |
|
], |
|
"conv_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"conv_factory" |
|
] |
|
] |
|
], |
|
"convtrans_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"convtrans_factory" |
|
] |
|
] |
|
], |
|
"maxpooling_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"maxpooling_factory" |
|
] |
|
] |
|
], |
|
"adaptive_maxpooling_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"adaptive_maxpooling_factory" |
|
] |
|
] |
|
], |
|
"avgpooling_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"avgpooling_factory" |
|
] |
|
] |
|
], |
|
"adaptive_avgpooling_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"adaptive_avgpooling_factory" |
|
] |
|
] |
|
], |
|
"replication_pad_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"replication_pad_factory" |
|
] |
|
] |
|
], |
|
"constant_pad_factory": [ |
|
[ |
|
"monai/networks/layers/factories.py", |
|
[ |
|
"constant_pad_factory" |
|
] |
|
] |
|
], |
|
"_conv": [ |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"separable_filtering", |
|
"_conv" |
|
] |
|
] |
|
], |
|
"separable_filtering": [ |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"separable_filtering" |
|
] |
|
] |
|
], |
|
"backward": [ |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"LLTMFunction", |
|
"backward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridPull", |
|
"backward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridPush", |
|
"backward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridCount", |
|
"backward" |
|
] |
|
], |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"_GridGrad", |
|
"backward" |
|
] |
|
] |
|
], |
|
"reset_parameters": [ |
|
[ |
|
"monai/networks/layers/simplelayers.py", |
|
[ |
|
"LLTM", |
|
"reset_parameters" |
|
] |
|
] |
|
], |
|
"grid_pull": [ |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"grid_pull" |
|
] |
|
] |
|
], |
|
"grid_push": [ |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"grid_push" |
|
] |
|
] |
|
], |
|
"grid_count": [ |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"grid_count" |
|
] |
|
] |
|
], |
|
"grid_grad": [ |
|
[ |
|
"monai/networks/layers/spatial_transforms.py", |
|
[ |
|
"grid_grad" |
|
] |
|
] |
|
], |
|
"_make_layer": [ |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"AHNet", |
|
"_make_layer" |
|
] |
|
] |
|
], |
|
"copy_from": [ |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"AHNet", |
|
"copy_from" |
|
] |
|
] |
|
], |
|
"copy_conv_param": [ |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"copy_conv_param" |
|
] |
|
] |
|
], |
|
"copy_bn_param": [ |
|
[ |
|
"monai/networks/nets/ahnet.py", |
|
[ |
|
"copy_bn_param" |
|
] |
|
] |
|
], |
|
"_get_final_layer": [ |
|
[ |
|
"monai/networks/nets/classifier.py", |
|
[ |
|
"Critic", |
|
"_get_final_layer" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/regressor.py", |
|
[ |
|
"Regressor", |
|
"_get_final_layer" |
|
] |
|
] |
|
], |
|
"_load_state_dict": [ |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"_load_state_dict" |
|
] |
|
] |
|
], |
|
"densenet121": [ |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"densenet121" |
|
] |
|
] |
|
], |
|
"densenet169": [ |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"densenet169" |
|
] |
|
] |
|
], |
|
"densenet201": [ |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"densenet201" |
|
] |
|
] |
|
], |
|
"densenet264": [ |
|
[ |
|
"monai/networks/nets/densenet.py", |
|
[ |
|
"densenet264" |
|
] |
|
] |
|
], |
|
"check_kernel_stride": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"check_kernel_stride" |
|
] |
|
] |
|
], |
|
"check_deep_supr_num": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"check_deep_supr_num" |
|
] |
|
] |
|
], |
|
"get_input_block": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_input_block" |
|
] |
|
] |
|
], |
|
"get_bottleneck": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_bottleneck" |
|
] |
|
] |
|
], |
|
"get_output_block": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_output_block" |
|
] |
|
] |
|
], |
|
"get_downsamples": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_downsamples" |
|
] |
|
] |
|
], |
|
"get_upsamples": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_upsamples" |
|
] |
|
] |
|
], |
|
"get_module_list": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_module_list" |
|
] |
|
] |
|
], |
|
"get_deep_supervision_heads": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"get_deep_supervision_heads" |
|
] |
|
] |
|
], |
|
"initialize_weights": [ |
|
[ |
|
"monai/networks/nets/dynunet.py", |
|
[ |
|
"DynUNet", |
|
"initialize_weights" |
|
] |
|
] |
|
], |
|
"_get_layer": [ |
|
[ |
|
"monai/networks/nets/generator.py", |
|
[ |
|
"Generator", |
|
"_get_layer" |
|
] |
|
], |
|
[ |
|
"monai/networks/nets/regressor.py", |
|
[ |
|
"Regressor", |
|
"_get_layer" |
|
] |
|
] |
|
], |
|
"_create_block": [ |
|
[ |
|
"monai/networks/nets/unet.py", |
|
[ |
|
"UNet", |
|
"__init__", |
|
"_create_block" |
|
] |
|
] |
|
], |
|
"_get_down_layer": [ |
|
[ |
|
"monai/networks/nets/unet.py", |
|
[ |
|
"UNet", |
|
"_get_down_layer" |
|
] |
|
] |
|
], |
|
"_get_bottom_layer": [ |
|
[ |
|
"monai/networks/nets/unet.py", |
|
[ |
|
"UNet", |
|
"_get_bottom_layer" |
|
] |
|
] |
|
], |
|
"_get_up_layer": [ |
|
[ |
|
"monai/networks/nets/unet.py", |
|
[ |
|
"UNet", |
|
"_get_up_layer" |
|
] |
|
] |
|
], |
|
"_make_nconv": [ |
|
[ |
|
"monai/networks/nets/vnet.py", |
|
[ |
|
"_make_nconv" |
|
] |
|
] |
|
], |
|
"one_hot": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"one_hot" |
|
] |
|
] |
|
], |
|
"slice_channels": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"slice_channels" |
|
] |
|
] |
|
], |
|
"predict_segmentation": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"predict_segmentation" |
|
] |
|
] |
|
], |
|
"normalize_transform": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"normalize_transform" |
|
] |
|
] |
|
], |
|
"to_norm_affine": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"to_norm_affine" |
|
] |
|
] |
|
], |
|
"normal_init": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"normal_init" |
|
] |
|
] |
|
], |
|
"icnr_init": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"icnr_init" |
|
] |
|
] |
|
], |
|
"pixelshuffle": [ |
|
[ |
|
"monai/networks/utils.py", |
|
[ |
|
"pixelshuffle" |
|
] |
|
] |
|
], |
|
"__setstate__": [ |
|
[ |
|
"monai/optimizers/novograd.py", |
|
[ |
|
"Novograd", |
|
"__setstate__" |
|
] |
|
] |
|
], |
|
"step": [ |
|
[ |
|
"monai/optimizers/novograd.py", |
|
[ |
|
"Novograd", |
|
"step" |
|
] |
|
] |
|
], |
|
"must_be_types_or_none": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"adaptor", |
|
"must_be_types_or_none" |
|
] |
|
] |
|
], |
|
"must_be_types": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"adaptor", |
|
"must_be_types" |
|
] |
|
] |
|
], |
|
"map_names": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"adaptor", |
|
"map_names" |
|
] |
|
] |
|
], |
|
"map_only_names": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"adaptor", |
|
"map_only_names" |
|
] |
|
] |
|
], |
|
"_inner": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"adaptor", |
|
"_inner" |
|
] |
|
], |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"apply_alias", |
|
"_inner" |
|
] |
|
], |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"to_kwargs", |
|
"_inner" |
|
] |
|
], |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"export", |
|
"_inner" |
|
] |
|
] |
|
], |
|
"adaptor": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"adaptor" |
|
] |
|
] |
|
], |
|
"apply_alias": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"apply_alias" |
|
] |
|
] |
|
], |
|
"to_kwargs": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"to_kwargs" |
|
] |
|
] |
|
], |
|
"__repr__": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"FunctionSignature", |
|
"__repr__" |
|
] |
|
] |
|
], |
|
"__str__": [ |
|
[ |
|
"monai/transforms/adaptors.py", |
|
[ |
|
"FunctionSignature", |
|
"__str__" |
|
] |
|
] |
|
], |
|
"set_random_state": [ |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"Randomizable", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/compose.py", |
|
[ |
|
"Compose", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"RandSpatialCropSamples", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/croppad/dictionary.py", |
|
[ |
|
"RandSpatialCropSamplesd", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"RandAffine", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rand2DElastic", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"Rand3DElastic", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"RandAffined", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rand2DElasticd", |
|
"set_random_state" |
|
] |
|
], |
|
[ |
|
"monai/transforms/spatial/dictionary.py", |
|
[ |
|
"Rand3DElasticd", |
|
"set_random_state" |
|
] |
|
] |
|
], |
|
"_determine_data_pad_width": [ |
|
[ |
|
"monai/transforms/croppad/array.py", |
|
[ |
|
"SpatialPad", |
|
"_determine_data_pad_width" |
|
] |
|
] |
|
], |
|
"_normalize": [ |
|
[ |
|
"monai/transforms/intensity/array.py", |
|
[ |
|
"NormalizeIntensity", |
|
"_normalize" |
|
] |
|
] |
|
], |
|
"register": [ |
|
[ |
|
"monai/transforms/io/array.py", |
|
[ |
|
"LoadImage", |
|
"register" |
|
] |
|
], |
|
[ |
|
"monai/transforms/io/dictionary.py", |
|
[ |
|
"LoadImaged", |
|
"register" |
|
] |
|
] |
|
], |
|
"_save_data_meta": [ |
|
[ |
|
"monai/transforms/io/array.py", |
|
[ |
|
"LoadNumpy", |
|
"__call__", |
|
"_save_data_meta" |
|
] |
|
] |
|
], |
|
"_torch_interp": [ |
|
[ |
|
"monai/transforms/spatial/array.py", |
|
[ |
|
"if_get_torch_version_tupl", |
|
"_torch_interp" |
|
] |
|
] |
|
], |
|
"rand_choice": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"rand_choice" |
|
] |
|
] |
|
], |
|
"img_bounds": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"img_bounds" |
|
] |
|
] |
|
], |
|
"in_bounds": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"in_bounds" |
|
] |
|
] |
|
], |
|
"is_empty": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"is_empty" |
|
] |
|
] |
|
], |
|
"zero_margins": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"zero_margins" |
|
] |
|
] |
|
], |
|
"rescale_array": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"rescale_array" |
|
] |
|
] |
|
], |
|
"rescale_instance_array": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"rescale_instance_array" |
|
] |
|
] |
|
], |
|
"rescale_array_int_max": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"rescale_array_int_max" |
|
] |
|
] |
|
], |
|
"copypaste_arrays": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"copypaste_arrays" |
|
] |
|
] |
|
], |
|
"resize_center": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"resize_center" |
|
] |
|
] |
|
], |
|
"map_binary_to_indices": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"map_binary_to_indices" |
|
] |
|
] |
|
], |
|
"_correct_centers": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"generate_pos_neg_label_crop_centers", |
|
"_correct_centers" |
|
] |
|
] |
|
], |
|
"generate_pos_neg_label_crop_centers": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"generate_pos_neg_label_crop_centers" |
|
] |
|
] |
|
], |
|
"apply_transform": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"apply_transform" |
|
] |
|
] |
|
], |
|
"create_grid": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"create_grid" |
|
] |
|
] |
|
], |
|
"create_control_grid": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"create_control_grid" |
|
] |
|
] |
|
], |
|
"create_rotate": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"create_rotate" |
|
] |
|
] |
|
], |
|
"create_shear": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"create_shear" |
|
] |
|
] |
|
], |
|
"create_scale": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"create_scale" |
|
] |
|
] |
|
], |
|
"create_translate": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"create_translate" |
|
] |
|
] |
|
], |
|
"generate_spatial_bounding_box": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"generate_spatial_bounding_box" |
|
] |
|
] |
|
], |
|
"get_largest_connected_component_mask": [ |
|
[ |
|
"monai/transforms/utils.py", |
|
[ |
|
"get_largest_connected_component_mask" |
|
] |
|
] |
|
], |
|
"_outer": [ |
|
[ |
|
"monai/utils/aliases.py", |
|
[ |
|
"alias", |
|
"_outer" |
|
] |
|
] |
|
], |
|
"alias": [ |
|
[ |
|
"monai/utils/aliases.py", |
|
[ |
|
"alias" |
|
] |
|
] |
|
], |
|
"resolve_name": [ |
|
[ |
|
"monai/utils/aliases.py", |
|
[ |
|
"resolve_name" |
|
] |
|
] |
|
], |
|
"timingwrap": [ |
|
[ |
|
"monai/utils/decorators.py", |
|
[ |
|
"timing", |
|
"timingwrap" |
|
] |
|
] |
|
], |
|
"timing": [ |
|
[ |
|
"monai/utils/decorators.py", |
|
[ |
|
"timing" |
|
] |
|
] |
|
], |
|
"replace_method": [ |
|
[ |
|
"monai/utils/decorators.py", |
|
[ |
|
"MethodReplacer", |
|
"replace_method" |
|
] |
|
] |
|
], |
|
"newinit": [ |
|
[ |
|
"monai/utils/decorators.py", |
|
[ |
|
"MethodReplacer", |
|
"__set_name__", |
|
"if_not_hasattr_owner_sel", |
|
"newinit" |
|
] |
|
] |
|
], |
|
"__set_name__": [ |
|
[ |
|
"monai/utils/decorators.py", |
|
[ |
|
"MethodReplacer", |
|
"__set_name__" |
|
] |
|
] |
|
], |
|
"zip_with": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"zip_with" |
|
] |
|
] |
|
], |
|
"star_zip_with": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"star_zip_with" |
|
] |
|
] |
|
], |
|
"first": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"first" |
|
] |
|
] |
|
], |
|
"issequenceiterable": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"issequenceiterable" |
|
] |
|
] |
|
], |
|
"ensure_tuple": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"ensure_tuple" |
|
] |
|
] |
|
], |
|
"ensure_tuple_size": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"ensure_tuple_size" |
|
] |
|
] |
|
], |
|
"ensure_tuple_rep": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"ensure_tuple_rep" |
|
] |
|
] |
|
], |
|
"fall_back_tuple": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"fall_back_tuple" |
|
] |
|
] |
|
], |
|
"is_scalar_tensor": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"is_scalar_tensor" |
|
] |
|
] |
|
], |
|
"is_scalar": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"is_scalar" |
|
] |
|
] |
|
], |
|
"progress_bar": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"progress_bar" |
|
] |
|
] |
|
], |
|
"get_seed": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"get_seed" |
|
] |
|
] |
|
], |
|
"set_determinism": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"set_determinism" |
|
] |
|
] |
|
], |
|
"_parse_var": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"list_to_dict", |
|
"_parse_var" |
|
] |
|
] |
|
], |
|
"list_to_dict": [ |
|
[ |
|
"monai/utils/misc.py", |
|
[ |
|
"list_to_dict" |
|
] |
|
] |
|
], |
|
"export": [ |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"export" |
|
] |
|
] |
|
], |
|
"load_submodules": [ |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"load_submodules" |
|
] |
|
] |
|
], |
|
"get_full_type_name": [ |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"get_full_type_name" |
|
] |
|
] |
|
], |
|
"min_version": [ |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"min_version" |
|
] |
|
] |
|
], |
|
"exact_version": [ |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"exact_version" |
|
] |
|
] |
|
], |
|
"optional_import": [ |
|
[ |
|
"monai/utils/module.py", |
|
[ |
|
"optional_import" |
|
] |
|
] |
|
], |
|
"_image3_animated_gif": [ |
|
[ |
|
"monai/visualize/img2tensorboard.py", |
|
[ |
|
"_image3_animated_gif" |
|
] |
|
] |
|
], |
|
"make_animated_gif_summary": [ |
|
[ |
|
"monai/visualize/img2tensorboard.py", |
|
[ |
|
"make_animated_gif_summary" |
|
] |
|
] |
|
], |
|
"add_animated_gif": [ |
|
[ |
|
"monai/visualize/img2tensorboard.py", |
|
[ |
|
"add_animated_gif" |
|
] |
|
] |
|
], |
|
"add_animated_gif_no_channels": [ |
|
[ |
|
"monai/visualize/img2tensorboard.py", |
|
[ |
|
"add_animated_gif_no_channels" |
|
] |
|
] |
|
], |
|
"plot_2d_or_3d_image": [ |
|
[ |
|
"monai/visualize/img2tensorboard.py", |
|
[ |
|
"plot_2d_or_3d_image" |
|
] |
|
] |
|
], |
|
"torch_parallel_backend": [ |
|
[ |
|
"setup.py", |
|
[ |
|
"torch_parallel_backend" |
|
] |
|
] |
|
], |
|
"omp_flags": [ |
|
[ |
|
"setup.py", |
|
[ |
|
"omp_flags" |
|
] |
|
] |
|
], |
|
"get_extensions": [ |
|
[ |
|
"setup.py", |
|
[ |
|
"get_extensions" |
|
] |
|
] |
|
], |
|
"get_cmds": [ |
|
[ |
|
"setup.py", |
|
[ |
|
"get_cmds" |
|
] |
|
] |
|
], |
|
"_enter_pr_4800": [ |
|
[ |
|
"tests/__init__.py", |
|
[ |
|
"_enter_pr_4800" |
|
] |
|
] |
|
], |
|
"get_and_check_clang_format": [ |
|
[ |
|
"tests/clang_format_utils.py", |
|
[ |
|
"get_and_check_clang_format" |
|
] |
|
] |
|
], |
|
"run_testsuit": [ |
|
[ |
|
"tests/min_tests.py", |
|
[ |
|
"run_testsuit" |
|
] |
|
] |
|
], |
|
"test_value_shape": [ |
|
[ |
|
"tests/test_activations.py", |
|
[ |
|
"TestActivations", |
|
"test_value_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_activationsd.py", |
|
[ |
|
"TestActivationsd", |
|
"test_value_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_as_discrete.py", |
|
[ |
|
"TestAsDiscrete", |
|
"test_value_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_as_discreted.py", |
|
[ |
|
"TestAsDiscreted", |
|
"test_value_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_list_to_dict.py", |
|
[ |
|
"TestListToDict", |
|
"test_value_shape" |
|
] |
|
] |
|
], |
|
"foo": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_function_signature", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_single_in_single_out", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_multi_in_single_out", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_default_arg_single_out", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_multi_out", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_dict_out", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestApplyAlias", |
|
"test_apply_alias", |
|
"foo" |
|
] |
|
], |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestToKwargs", |
|
"test_to_kwargs", |
|
"foo" |
|
] |
|
] |
|
], |
|
"test_function_signature": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_function_signature" |
|
] |
|
] |
|
], |
|
"test_single_in_single_out": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_single_in_single_out" |
|
] |
|
] |
|
], |
|
"test_multi_in_single_out": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_multi_in_single_out" |
|
] |
|
] |
|
], |
|
"test_default_arg_single_out": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_default_arg_single_out" |
|
] |
|
] |
|
], |
|
"test_multi_out": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_multi_out" |
|
] |
|
] |
|
], |
|
"test_dict_out": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestAdaptors", |
|
"test_dict_out" |
|
] |
|
] |
|
], |
|
"test_apply_alias": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestApplyAlias", |
|
"test_apply_alias" |
|
] |
|
] |
|
], |
|
"compose_like": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestToKwargs", |
|
"test_to_kwargs", |
|
"compose_like" |
|
] |
|
] |
|
], |
|
"test_to_kwargs": [ |
|
[ |
|
"tests/test_adaptors.py", |
|
[ |
|
"TestToKwargs", |
|
"test_to_kwargs" |
|
] |
|
] |
|
], |
|
"test_shape": [ |
|
[ |
|
"tests/test_add_channeld.py", |
|
[ |
|
"TestAddChanneld", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_arraydataset.py", |
|
[ |
|
"TestArrayDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_as_channel_first.py", |
|
[ |
|
"TestAsChannelFirst", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_as_channel_firstd.py", |
|
[ |
|
"TestAsChannelFirstd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_as_channel_last.py", |
|
[ |
|
"TestAsChannelLast", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_as_channel_lastd.py", |
|
[ |
|
"TestAsChannelLastd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_cachedataset.py", |
|
[ |
|
"TestCacheDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_cachedataset_parallel.py", |
|
[ |
|
"TestCacheDatasetParallel", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_center_spatial_crop.py", |
|
[ |
|
"TestCenterSpatialCrop", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_center_spatial_cropd.py", |
|
[ |
|
"TestCenterSpatialCropd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_dataset.py", |
|
[ |
|
"TestDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_discriminator.py", |
|
[ |
|
"TestDiscriminator", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_downsample_block.py", |
|
[ |
|
"TestMaxAvgPool", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_dynunet.py", |
|
[ |
|
"TestDynUNet", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_dynunet.py", |
|
[ |
|
"TestDynUNetDeepSupervision", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_dynunet_block.py", |
|
[ |
|
"TestResBasicBlock", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_dynunet_block.py", |
|
[ |
|
"TestUpBlock", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_generalized_dice_loss.py", |
|
[ |
|
"TestGeneralizedDiceLoss", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_generator.py", |
|
[ |
|
"TestGenerator", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_highresnet.py", |
|
[ |
|
"TestHighResNet", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_load_imaged.py", |
|
[ |
|
"TestLoadImaged", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_load_nifti.py", |
|
[ |
|
"TestLoadNifti", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_load_niftid.py", |
|
[ |
|
"TestLoadNiftid", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_load_png.py", |
|
[ |
|
"TestLoadPNG", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_load_pngd.py", |
|
[ |
|
"TestLoadPNGd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_masked_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_patch_dataset.py", |
|
[ |
|
"TestPatchDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_persistentdataset.py", |
|
[ |
|
"TestDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_spatial_crop.py", |
|
[ |
|
"TestRandSpatialCrop", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_spatial_crop_samples.py", |
|
[ |
|
"TestRandSpatialCropSamples", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_spatial_crop_samplesd.py", |
|
[ |
|
"TestRandSpatialCropSamplesd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_spatial_cropd.py", |
|
[ |
|
"TestRandSpatialCropd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_repeat_channel.py", |
|
[ |
|
"TestRepeatChannel", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_repeat_channeld.py", |
|
[ |
|
"TestRepeatChanneld", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_se_block.py", |
|
[ |
|
"TestSEBlockLayer", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_se_blocks.py", |
|
[ |
|
"TestChannelSELayer", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_se_blocks.py", |
|
[ |
|
"TestResidualSELayer", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_segresnet.py", |
|
[ |
|
"TestResBlock", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_segresnet_block.py", |
|
[ |
|
"TestResBlock", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_simple_aspp.py", |
|
[ |
|
"TestChannelSELayer", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_smartcachedataset.py", |
|
[ |
|
"TestSmartCacheDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_spatial_crop.py", |
|
[ |
|
"TestSpatialCrop", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_spatial_cropd.py", |
|
[ |
|
"TestSpatialCropd", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_split_channel.py", |
|
[ |
|
"TestSplitChannel", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_split_channeld.py", |
|
[ |
|
"TestSplitChanneld", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_split_dataset.py", |
|
[ |
|
"TestSplitDataset", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_squeezedim.py", |
|
[ |
|
"TestSqueezeDim", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_squeezedimd.py", |
|
[ |
|
"TestSqueezeDim", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_to_onehot.py", |
|
[ |
|
"TestToOneHot", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_tversky_loss.py", |
|
[ |
|
"TestTverskyLoss", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_unet.py", |
|
[ |
|
"TestUNET", |
|
"test_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_upsample_block.py", |
|
[ |
|
"TestUpsample", |
|
"test_shape" |
|
] |
|
] |
|
], |
|
"test_correct_results": [ |
|
[ |
|
"tests/test_adjust_contrast.py", |
|
[ |
|
"TestAdjustContrast", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_adjust_contrastd.py", |
|
[ |
|
"TestAdjustContrastd", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_flip.py", |
|
[ |
|
"TestFlip", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_flipd.py", |
|
[ |
|
"TestFlipd", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_keep_largest_connected_component.py", |
|
[ |
|
"TestKeepLargestConnectedComponent", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_keep_largest_connected_componentd.py", |
|
[ |
|
"TestKeepLargestConnectedComponentd", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_adjust_contrast.py", |
|
[ |
|
"TestRandAdjustContrast", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_adjust_contrastd.py", |
|
[ |
|
"TestRandAdjustContrastd", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_flip.py", |
|
[ |
|
"TestRandFlip", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_flipd.py", |
|
[ |
|
"TestRandFlipd", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_gaussian_noise.py", |
|
[ |
|
"TestRandGaussianNoise", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_gaussian_noised.py", |
|
[ |
|
"TestRandGaussianNoised", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate.py", |
|
[ |
|
"TestRandRotate2D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate.py", |
|
[ |
|
"TestRandRotate3D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotated.py", |
|
[ |
|
"TestRandRotated2D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_zoom.py", |
|
[ |
|
"TestRandZoom", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_zoomd.py", |
|
[ |
|
"TestRandZoomd", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_resize.py", |
|
[ |
|
"TestResize", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_resized.py", |
|
[ |
|
"TestResized", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate.py", |
|
[ |
|
"TestRotate2D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate.py", |
|
[ |
|
"TestRotate3D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rotated.py", |
|
[ |
|
"TestRotated2D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rotated.py", |
|
[ |
|
"TestRotated3D", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_rotated.py", |
|
[ |
|
"TestRotated3DXY", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_zoom.py", |
|
[ |
|
"TestZoom", |
|
"test_correct_results" |
|
] |
|
], |
|
[ |
|
"tests/test_zoomd.py", |
|
[ |
|
"TestZoomd", |
|
"test_correct_results" |
|
] |
|
] |
|
], |
|
"test_affine": [ |
|
[ |
|
"tests/test_affine.py", |
|
[ |
|
"TestAffine", |
|
"test_affine" |
|
] |
|
], |
|
[ |
|
"tests/test_header_correct.py", |
|
[ |
|
"TestCorrection", |
|
"test_affine" |
|
] |
|
] |
|
], |
|
"test_affine_grid": [ |
|
[ |
|
"tests/test_affine_grid.py", |
|
[ |
|
"TestAffineGrid", |
|
"test_affine_grid" |
|
] |
|
] |
|
], |
|
"test_norm_xform": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestNormTransform", |
|
"test_norm_xform" |
|
] |
|
] |
|
], |
|
"test_to_norm_affine": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestToNormAffine", |
|
"test_to_norm_affine" |
|
] |
|
] |
|
], |
|
"test_to_norm_affine_ill": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestToNormAffine", |
|
"test_to_norm_affine_ill" |
|
] |
|
] |
|
], |
|
"test_affine_shift": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_affine_shift" |
|
] |
|
] |
|
], |
|
"test_affine_shift_1": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_affine_shift_1" |
|
] |
|
] |
|
], |
|
"test_affine_shift_2": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_affine_shift_2" |
|
] |
|
] |
|
], |
|
"test_zoom": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_zoom" |
|
] |
|
] |
|
], |
|
"test_zoom_1": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_zoom_1" |
|
] |
|
] |
|
], |
|
"test_zoom_2": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_zoom_2" |
|
] |
|
] |
|
], |
|
"test_affine_transform_minimum": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_affine_transform_minimum" |
|
] |
|
] |
|
], |
|
"test_affine_transform_2d": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_affine_transform_2d" |
|
] |
|
] |
|
], |
|
"test_affine_transform_3d": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_affine_transform_3d" |
|
] |
|
] |
|
], |
|
"test_ill_affine_transform": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_ill_affine_transform" |
|
] |
|
] |
|
], |
|
"test_forward_2d": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_forward_2d" |
|
] |
|
] |
|
], |
|
"test_forward_3d": [ |
|
[ |
|
"tests/test_affine_transform.py", |
|
[ |
|
"TestAffineTransform", |
|
"test_forward_3d" |
|
] |
|
] |
|
], |
|
"test_fcn_shape": [ |
|
[ |
|
"tests/test_ahnet.py", |
|
[ |
|
"TestFCN", |
|
"test_fcn_shape" |
|
] |
|
] |
|
], |
|
"test_mcfcn_shape": [ |
|
[ |
|
"tests/test_ahnet.py", |
|
[ |
|
"TestMCFCN", |
|
"test_mcfcn_shape" |
|
] |
|
] |
|
], |
|
"test_ahnet_shape": [ |
|
[ |
|
"tests/test_ahnet.py", |
|
[ |
|
"TestAHNET", |
|
"test_ahnet_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_ahnet.py", |
|
[ |
|
"TestAHNETWithPretrain", |
|
"test_ahnet_shape" |
|
] |
|
] |
|
], |
|
"test_initialize_pretrained": [ |
|
[ |
|
"tests/test_ahnet.py", |
|
[ |
|
"TestAHNETWithPretrain", |
|
"test_initialize_pretrained" |
|
] |
|
] |
|
], |
|
"test_default_none": [ |
|
[ |
|
"tests/test_arraydataset.py", |
|
[ |
|
"TestArrayDataset", |
|
"test_default_none" |
|
] |
|
] |
|
], |
|
"test_dataloading_img": [ |
|
[ |
|
"tests/test_arraydataset.py", |
|
[ |
|
"TestArrayDataset", |
|
"test_dataloading_img" |
|
] |
|
] |
|
], |
|
"test_dataloading_img_label": [ |
|
[ |
|
"tests/test_arraydataset.py", |
|
[ |
|
"TestArrayDataset", |
|
"test_dataloading_img_label" |
|
] |
|
] |
|
], |
|
"test_pad_shape": [ |
|
[ |
|
"tests/test_border_pad.py", |
|
[ |
|
"TestBorderPad", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_border_padd.py", |
|
[ |
|
"TestBorderPadd", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_divisible_pad.py", |
|
[ |
|
"TestDivisiblePad", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_divisible_padd.py", |
|
[ |
|
"TestDivisiblePadd", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_resize_with_pad_or_crop.py", |
|
[ |
|
"TestResizeWithPadOrCrop", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_resize_with_pad_or_cropd.py", |
|
[ |
|
"TestResizeWithPadOrCropd", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_spatial_pad.py", |
|
[ |
|
"TestSpatialPad", |
|
"test_pad_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_spatial_padd.py", |
|
[ |
|
"TestSpatialPadd", |
|
"test_pad_shape" |
|
] |
|
] |
|
], |
|
"test_type": [ |
|
[ |
|
"tests/test_cast_to_type.py", |
|
[ |
|
"TestCastToType", |
|
"test_type" |
|
] |
|
], |
|
[ |
|
"tests/test_cast_to_typed.py", |
|
[ |
|
"TestCastToTyped", |
|
"test_type" |
|
] |
|
] |
|
], |
|
"test_value": [ |
|
[ |
|
"tests/test_center_spatial_crop.py", |
|
[ |
|
"TestCenterSpatialCrop", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_center_spatial_cropd.py", |
|
[ |
|
"TestCenterSpatialCropd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_meandice.py", |
|
[ |
|
"TestComputeMeanDice", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_roc_auc.py", |
|
[ |
|
"TestComputeROCAUC", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_tnr.py", |
|
[ |
|
"TestComputeTnrClf", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_tnr.py", |
|
[ |
|
"TestComputeTnrSeg", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_tpr.py", |
|
[ |
|
"TestComputeTprClf", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_tpr.py", |
|
[ |
|
"TestComputeTprSeg", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_crop_foreground.py", |
|
[ |
|
"TestCropForeground", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_crop_foregroundd.py", |
|
[ |
|
"TestCropForegroundd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_data_stats.py", |
|
[ |
|
"TestDataStats", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_data_statsd.py", |
|
[ |
|
"TestDataStatsd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_gaussian_sharpen.py", |
|
[ |
|
"TestGaussianSharpen", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_gaussian_sharpend.py", |
|
[ |
|
"TestGaussianSharpend", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_gaussian_smooth.py", |
|
[ |
|
"TestGaussianSmooth", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_gaussian_smoothd.py", |
|
[ |
|
"TestGaussianSmoothd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_generate_spatial_bounding_box.py", |
|
[ |
|
"TestGenerateSpatialBoundingBox", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_hausdorff_distance.py", |
|
[ |
|
"TestHausdorffDistance", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_is_supported_format.py", |
|
[ |
|
"TestIsSupportedFormat", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_label_to_mask.py", |
|
[ |
|
"TestLabelToMask", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_label_to_maskd.py", |
|
[ |
|
"TestLabelToMaskd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_lltm.py", |
|
[ |
|
"TestLLTM", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_mask_intensity.py", |
|
[ |
|
"TestMaskIntensity", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_mask_intensityd.py", |
|
[ |
|
"TestMaskIntensityd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_mean_ensemble.py", |
|
[ |
|
"TestMeanEnsemble", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_mean_ensembled.py", |
|
[ |
|
"TestMeanEnsembled", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_gaussian_sharpen.py", |
|
[ |
|
"TestRandGaussianSharpen", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_gaussian_sharpend.py", |
|
[ |
|
"TestRandGaussianSharpend", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_gaussian_smooth.py", |
|
[ |
|
"TestRandGaussianSmooth", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_gaussian_smoothd.py", |
|
[ |
|
"TestRandGaussianSmoothd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_scale_intensity.py", |
|
[ |
|
"TestRandScaleIntensity", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_scale_intensityd.py", |
|
[ |
|
"TestRandScaleIntensityd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_shift_intensity.py", |
|
[ |
|
"TestRandShiftIntensity", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_shift_intensityd.py", |
|
[ |
|
"TestRandShiftIntensityd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_spatial_crop.py", |
|
[ |
|
"TestRandSpatialCrop", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_spatial_cropd.py", |
|
[ |
|
"TestRandSpatialCropd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_shift_intensity.py", |
|
[ |
|
"TestShiftIntensity", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_shift_intensityd.py", |
|
[ |
|
"TestShiftIntensityd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_simulatedelay.py", |
|
[ |
|
"TestSimulateDelay", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_simulatedelayd.py", |
|
[ |
|
"TestSimulateDelay", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_surface_distance.py", |
|
[ |
|
"TestAllSurfaceMetrics", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_threshold_intensity.py", |
|
[ |
|
"TestThresholdIntensity", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_threshold_intensityd.py", |
|
[ |
|
"TestThresholdIntensityd", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_vote_ensemble.py", |
|
[ |
|
"TestVoteEnsemble", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_vote_ensembled.py", |
|
[ |
|
"TestVoteEnsembled", |
|
"test_value" |
|
] |
|
], |
|
[ |
|
"tests/test_zipdataset.py", |
|
[ |
|
"TestZipDataset", |
|
"test_value" |
|
] |
|
] |
|
], |
|
"test_result": [ |
|
[ |
|
"tests/test_check_hash.py", |
|
[ |
|
"TestCheckMD5", |
|
"test_result" |
|
] |
|
] |
|
], |
|
"test_hash_type_error": [ |
|
[ |
|
"tests/test_check_hash.py", |
|
[ |
|
"TestCheckMD5", |
|
"test_hash_type_error" |
|
] |
|
] |
|
], |
|
"test_empty_compose": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_empty_compose" |
|
] |
|
] |
|
], |
|
"a": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_non_dict_compose", |
|
"a" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_dict_compose", |
|
"a" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_list_dict_compose", |
|
"a" |
|
] |
|
] |
|
], |
|
"b": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_non_dict_compose", |
|
"b" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_dict_compose", |
|
"b" |
|
] |
|
], |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_list_dict_compose", |
|
"b" |
|
] |
|
] |
|
], |
|
"test_non_dict_compose": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_non_dict_compose" |
|
] |
|
] |
|
], |
|
"test_dict_compose": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_dict_compose" |
|
] |
|
] |
|
], |
|
"c": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_list_dict_compose", |
|
"c" |
|
] |
|
] |
|
], |
|
"test_list_dict_compose": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_list_dict_compose" |
|
] |
|
] |
|
], |
|
"test_random_compose": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_random_compose" |
|
] |
|
] |
|
], |
|
"test_randomize_warn": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_randomize_warn" |
|
] |
|
] |
|
], |
|
"test_err_msg": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_err_msg" |
|
] |
|
] |
|
], |
|
"test_data_loader": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_data_loader" |
|
] |
|
] |
|
], |
|
"test_data_loader_2": [ |
|
[ |
|
"tests/test_compose.py", |
|
[ |
|
"TestCompose", |
|
"test_data_loader_2" |
|
] |
|
] |
|
], |
|
"test_nans": [ |
|
[ |
|
"tests/test_compute_meandice.py", |
|
[ |
|
"TestComputeMeanDice", |
|
"test_nans" |
|
] |
|
] |
|
], |
|
"test_value_class": [ |
|
[ |
|
"tests/test_compute_meandice.py", |
|
[ |
|
"TestComputeMeanDice", |
|
"test_value_class" |
|
] |
|
] |
|
], |
|
"test_nans_class": [ |
|
[ |
|
"tests/test_compute_meandice.py", |
|
[ |
|
"TestComputeMeanDice", |
|
"test_nans_class" |
|
] |
|
] |
|
], |
|
"produce_seg_input": [ |
|
[ |
|
"tests/test_compute_tnr.py", |
|
[ |
|
"produce_seg_input" |
|
] |
|
], |
|
[ |
|
"tests/test_compute_tpr.py", |
|
[ |
|
"produce_seg_input" |
|
] |
|
] |
|
], |
|
"test_tensor_values": [ |
|
[ |
|
"tests/test_concat_itemsd.py", |
|
[ |
|
"TestConcatItemsd", |
|
"test_tensor_values" |
|
] |
|
], |
|
[ |
|
"tests/test_copy_itemsd.py", |
|
[ |
|
"TestCopyItemsd", |
|
"test_tensor_values" |
|
] |
|
] |
|
], |
|
"test_numpy_values": [ |
|
[ |
|
"tests/test_concat_itemsd.py", |
|
[ |
|
"TestConcatItemsd", |
|
"test_numpy_values" |
|
] |
|
], |
|
[ |
|
"tests/test_copy_itemsd.py", |
|
[ |
|
"TestCopyItemsd", |
|
"test_numpy_values" |
|
] |
|
] |
|
], |
|
"test_conv1": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_conv1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_conv1" |
|
] |
|
] |
|
], |
|
"test_conv1_no_acti": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_conv1_no_acti" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_conv1_no_acti" |
|
] |
|
] |
|
], |
|
"test_conv_only1": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_conv_only1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_conv_only1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestResidualUnit2D", |
|
"test_conv_only1" |
|
] |
|
] |
|
], |
|
"test_stride1": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_stride1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_stride1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestResidualUnit2D", |
|
"test_stride1" |
|
] |
|
] |
|
], |
|
"test_dilation1": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_dilation1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_dilation1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestResidualUnit2D", |
|
"test_dilation1" |
|
] |
|
] |
|
], |
|
"test_dropout1": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_dropout1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_dropout1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestResidualUnit2D", |
|
"test_dropout1" |
|
] |
|
] |
|
], |
|
"test_transpose1": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_transpose1" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_transpose1" |
|
] |
|
] |
|
], |
|
"test_transpose2": [ |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution2D", |
|
"test_transpose2" |
|
] |
|
], |
|
[ |
|
"tests/test_convolutions.py", |
|
[ |
|
"TestConvolution3D", |
|
"test_transpose2" |
|
] |
|
] |
|
], |
|
"test_array_values": [ |
|
[ |
|
"tests/test_copy_itemsd.py", |
|
[ |
|
"TestCopyItemsd", |
|
"test_array_values" |
|
] |
|
] |
|
], |
|
"test_create_grid": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"TestCreateGrid", |
|
"test_create_grid" |
|
] |
|
] |
|
], |
|
"test_create_control_grid": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"TestCreateGrid", |
|
"test_create_control_grid" |
|
] |
|
] |
|
], |
|
"test_assert": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"test_assert" |
|
] |
|
] |
|
], |
|
"test_create_rotate": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"TestCreateAffine", |
|
"test_create_rotate" |
|
] |
|
] |
|
], |
|
"test_create_shear": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"TestCreateAffine", |
|
"test_create_shear" |
|
] |
|
] |
|
], |
|
"test_create_scale": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"TestCreateAffine", |
|
"test_create_scale" |
|
] |
|
] |
|
], |
|
"test_create_translate": [ |
|
[ |
|
"tests/test_create_grid_and_affine.py", |
|
[ |
|
"TestCreateAffine", |
|
"test_create_translate" |
|
] |
|
] |
|
], |
|
"test_saved_content": [ |
|
[ |
|
"tests/test_csv_saver.py", |
|
[ |
|
"TestCSVSaver", |
|
"test_saved_content" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_classification_saver.py", |
|
[ |
|
"TestHandlerClassificationSaver", |
|
"test_saved_content" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_segmentation_saver.py", |
|
[ |
|
"TestHandlerSegmentationSaver", |
|
"test_saved_content" |
|
] |
|
], |
|
[ |
|
"tests/test_nifti_saver.py", |
|
[ |
|
"TestNiftiSaver", |
|
"test_saved_content" |
|
] |
|
], |
|
[ |
|
"tests/test_png_saver.py", |
|
[ |
|
"TestPNGSaver", |
|
"test_saved_content" |
|
] |
|
] |
|
], |
|
"_test_dataset": [ |
|
[ |
|
"tests/test_cvdecathlondataset.py", |
|
[ |
|
"TestCVDecathlonDataset", |
|
"test_values", |
|
"_test_dataset" |
|
] |
|
], |
|
[ |
|
"tests/test_decathlondataset.py", |
|
[ |
|
"TestDecathlonDataset", |
|
"test_values", |
|
"_test_dataset" |
|
] |
|
], |
|
[ |
|
"tests/test_mednistdataset.py", |
|
[ |
|
"TestMedNISTDataset", |
|
"test_values", |
|
"_test_dataset" |
|
] |
|
] |
|
], |
|
"test_values": [ |
|
[ |
|
"tests/test_cvdecathlondataset.py", |
|
[ |
|
"TestCVDecathlonDataset", |
|
"test_values" |
|
] |
|
], |
|
[ |
|
"tests/test_dataloader.py", |
|
[ |
|
"TestDataLoader", |
|
"test_values" |
|
] |
|
], |
|
[ |
|
"tests/test_decathlondataset.py", |
|
[ |
|
"TestDecathlonDataset", |
|
"test_values" |
|
] |
|
], |
|
[ |
|
"tests/test_mednistdataset.py", |
|
[ |
|
"TestMedNISTDataset", |
|
"test_values" |
|
] |
|
], |
|
[ |
|
"tests/test_set_determinism.py", |
|
[ |
|
"TestSetDeterminism", |
|
"test_values" |
|
] |
|
] |
|
], |
|
"test_file": [ |
|
[ |
|
"tests/test_data_stats.py", |
|
[ |
|
"TestDataStats", |
|
"test_file" |
|
] |
|
], |
|
[ |
|
"tests/test_data_statsd.py", |
|
[ |
|
"TestDataStatsd", |
|
"test_file" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_checkpoint_saver.py", |
|
[ |
|
"TestHandlerCheckpointSaver", |
|
"test_file" |
|
] |
|
] |
|
], |
|
"test_memory": [ |
|
[ |
|
"tests/test_delete_itemsd.py", |
|
[ |
|
"TestDeleteItemsd", |
|
"test_memory" |
|
] |
|
] |
|
], |
|
"test_121_3d_shape_pretrain": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestPretrainedDENSENET", |
|
"test_121_3d_shape_pretrain" |
|
] |
|
] |
|
], |
|
"test_121_4d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_121_4d_shape" |
|
] |
|
] |
|
], |
|
"test_169_4d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_169_4d_shape" |
|
] |
|
] |
|
], |
|
"test_201_4d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_201_4d_shape" |
|
] |
|
] |
|
], |
|
"test_264_4d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_264_4d_shape" |
|
] |
|
] |
|
], |
|
"test_121_3d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_121_3d_shape" |
|
] |
|
] |
|
], |
|
"test_169_3d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_169_3d_shape" |
|
] |
|
] |
|
], |
|
"test_201_3d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_201_3d_shape" |
|
] |
|
] |
|
], |
|
"test_264_3d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_264_3d_shape" |
|
] |
|
] |
|
], |
|
"test_121_2d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_121_2d_shape" |
|
] |
|
] |
|
], |
|
"test_169_2d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_169_2d_shape" |
|
] |
|
] |
|
], |
|
"test_201_2d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_201_2d_shape" |
|
] |
|
] |
|
], |
|
"test_264_2d_shape": [ |
|
[ |
|
"tests/test_densenet.py", |
|
[ |
|
"TestDENSENET", |
|
"test_264_2d_shape" |
|
] |
|
] |
|
], |
|
"test_ill_shape": [ |
|
[ |
|
"tests/test_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_ill_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_ill_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_generalized_dice_loss.py", |
|
[ |
|
"TestGeneralizedDiceLoss", |
|
"test_ill_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_masked_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_ill_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_tversky_loss.py", |
|
[ |
|
"TestTverskyLoss", |
|
"test_ill_shape" |
|
] |
|
] |
|
], |
|
"test_ill_opts": [ |
|
[ |
|
"tests/test_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_ill_opts" |
|
] |
|
], |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_ill_opts" |
|
] |
|
], |
|
[ |
|
"tests/test_generalized_dice_loss.py", |
|
[ |
|
"TestGeneralizedDiceLoss", |
|
"test_ill_opts" |
|
] |
|
], |
|
[ |
|
"tests/test_masked_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_ill_opts" |
|
] |
|
] |
|
], |
|
"test_input_warnings": [ |
|
[ |
|
"tests/test_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_input_warnings" |
|
] |
|
], |
|
[ |
|
"tests/test_generalized_dice_loss.py", |
|
[ |
|
"TestGeneralizedDiceLoss", |
|
"test_input_warnings" |
|
] |
|
], |
|
[ |
|
"tests/test_masked_dice_loss.py", |
|
[ |
|
"TestDiceLoss", |
|
"test_input_warnings" |
|
] |
|
], |
|
[ |
|
"tests/test_tversky_loss.py", |
|
[ |
|
"TestTverskyLoss", |
|
"test_input_warnings" |
|
] |
|
] |
|
], |
|
"test_actions": [ |
|
[ |
|
"tests/test_download_and_extract.py", |
|
[ |
|
"TestDownloadAndExtract", |
|
"test_actions" |
|
] |
|
] |
|
], |
|
"test_ill_arg": [ |
|
[ |
|
"tests/test_dynunet_block.py", |
|
[ |
|
"TestResBasicBlock", |
|
"test_ill_arg" |
|
] |
|
], |
|
[ |
|
"tests/test_optim_novograd.py", |
|
[ |
|
"TestNovograd", |
|
"test_ill_arg" |
|
] |
|
], |
|
[ |
|
"tests/test_se_block.py", |
|
[ |
|
"TestSEBlockLayer", |
|
"test_ill_arg" |
|
] |
|
], |
|
[ |
|
"tests/test_se_blocks.py", |
|
[ |
|
"TestChannelSELayer", |
|
"test_ill_arg" |
|
] |
|
], |
|
[ |
|
"tests/test_segresnet.py", |
|
[ |
|
"TestResBlock", |
|
"test_ill_arg" |
|
] |
|
], |
|
[ |
|
"tests/test_segresnet_block.py", |
|
[ |
|
"TestResBlock", |
|
"test_ill_arg" |
|
] |
|
] |
|
], |
|
"test_content": [ |
|
[ |
|
"tests/test_ensemble_evaluator.py", |
|
[ |
|
"TestEnsembleEvaluator", |
|
"test_content" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_lr_scheduler.py", |
|
[ |
|
"TestHandlerLrSchedule", |
|
"test_content" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_smartcache.py", |
|
[ |
|
"TestHandlerSmartCache", |
|
"test_content" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_validation.py", |
|
[ |
|
"TestHandlerValidation", |
|
"test_content" |
|
] |
|
] |
|
], |
|
"test_type_shape": [ |
|
[ |
|
"tests/test_fg_bg_to_indices.py", |
|
[ |
|
"TestFgBgToIndices", |
|
"test_type_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_fg_bg_to_indicesd.py", |
|
[ |
|
"TestFgBgToIndicesd", |
|
"test_type_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_generate_pos_neg_label_crop_centers.py", |
|
[ |
|
"TestGeneratePosNegLabelCropCenters", |
|
"test_type_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_list_data_collate.py", |
|
[ |
|
"TestListDataCollate", |
|
"test_type_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_map_binary_to_indices.py", |
|
[ |
|
"TestMapBinaryToIndices", |
|
"test_type_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_crop_by_pos_neg_label.py", |
|
[ |
|
"TestRandCropByPosNegLabel", |
|
"test_type_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_crop_by_pos_neg_labeld.py", |
|
[ |
|
"TestRandCropByPosNegLabeld", |
|
"test_type_shape" |
|
] |
|
] |
|
], |
|
"test_invalid_inputs": [ |
|
[ |
|
"tests/test_flip.py", |
|
[ |
|
"TestFlip", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_flip.py", |
|
[ |
|
"TestRandFlip", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_zoom.py", |
|
[ |
|
"TestRandZoom", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_zoomd.py", |
|
[ |
|
"TestRandZoomd", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_resize.py", |
|
[ |
|
"TestResize", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_resized.py", |
|
[ |
|
"TestResized", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_squeezedim.py", |
|
[ |
|
"TestSqueezeDim", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_squeezedimd.py", |
|
[ |
|
"TestSqueezeDim", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_zoom.py", |
|
[ |
|
"TestZoom", |
|
"test_invalid_inputs" |
|
] |
|
], |
|
[ |
|
"tests/test_zoomd.py", |
|
[ |
|
"TestZoomd", |
|
"test_invalid_inputs" |
|
] |
|
] |
|
], |
|
"test_invalid_cases": [ |
|
[ |
|
"tests/test_flipd.py", |
|
[ |
|
"TestFlipd", |
|
"test_invalid_cases" |
|
] |
|
] |
|
], |
|
"test_consistency_with_cross_entropy_2d": [ |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_consistency_with_cross_entropy_2d" |
|
] |
|
] |
|
], |
|
"test_consistency_with_cross_entropy_classification": [ |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_consistency_with_cross_entropy_classification" |
|
] |
|
] |
|
], |
|
"test_bin_seg_2d": [ |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_bin_seg_2d" |
|
] |
|
], |
|
[ |
|
"tests/test_generalized_wasserstein_dice_loss.py", |
|
[ |
|
"TestGeneralizedWassersteinDiceLoss", |
|
"test_bin_seg_2d" |
|
] |
|
] |
|
], |
|
"test_empty_class_2d": [ |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_empty_class_2d" |
|
] |
|
], |
|
[ |
|
"tests/test_generalized_wasserstein_dice_loss.py", |
|
[ |
|
"TestGeneralizedWassersteinDiceLoss", |
|
"test_empty_class_2d" |
|
] |
|
] |
|
], |
|
"test_multi_class_seg_2d": [ |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_multi_class_seg_2d" |
|
] |
|
] |
|
], |
|
"test_bin_seg_3d": [ |
|
[ |
|
"tests/test_focal_loss.py", |
|
[ |
|
"TestFocalLoss", |
|
"test_bin_seg_3d" |
|
] |
|
] |
|
], |
|
"test_gaussian": [ |
|
[ |
|
"tests/test_gaussian.py", |
|
[ |
|
"TestGaussian1d", |
|
"test_gaussian" |
|
] |
|
] |
|
], |
|
"test_scalespace_gaussian": [ |
|
[ |
|
"tests/test_gaussian.py", |
|
[ |
|
"TestGaussian1d", |
|
"test_scalespace_gaussian" |
|
] |
|
] |
|
], |
|
"test_norm_false": [ |
|
[ |
|
"tests/test_gaussian.py", |
|
[ |
|
"TestGaussian1d", |
|
"test_norm_false" |
|
] |
|
] |
|
], |
|
"test_wrong_sigma": [ |
|
[ |
|
"tests/test_gaussian.py", |
|
[ |
|
"TestGaussian1d", |
|
"test_wrong_sigma" |
|
] |
|
] |
|
], |
|
"test_train": [ |
|
[ |
|
"tests/test_gaussian_filter.py", |
|
[ |
|
"GaussianFilterBackprop", |
|
"test_train" |
|
] |
|
] |
|
], |
|
"test_1d": [ |
|
[ |
|
"tests/test_gaussian_filter.py", |
|
[ |
|
"GaussianFilterTestCase", |
|
"test_1d" |
|
] |
|
] |
|
], |
|
"test_2d": [ |
|
[ |
|
"tests/test_gaussian_filter.py", |
|
[ |
|
"GaussianFilterTestCase", |
|
"test_2d" |
|
] |
|
] |
|
], |
|
"test_3d": [ |
|
[ |
|
"tests/test_gaussian_filter.py", |
|
[ |
|
"GaussianFilterTestCase", |
|
"test_3d" |
|
] |
|
] |
|
], |
|
"test_3d_sigmas": [ |
|
[ |
|
"tests/test_gaussian_filter.py", |
|
[ |
|
"GaussianFilterTestCase", |
|
"test_3d_sigmas" |
|
] |
|
] |
|
], |
|
"test_wrong_args": [ |
|
[ |
|
"tests/test_gaussian_filter.py", |
|
[ |
|
"GaussianFilterTestCase", |
|
"test_wrong_args" |
|
] |
|
] |
|
], |
|
"test_one_save_one_load": [ |
|
[ |
|
"tests/test_handler_checkpoint_loader.py", |
|
[ |
|
"TestHandlerCheckpointLoader", |
|
"test_one_save_one_load" |
|
] |
|
] |
|
], |
|
"test_two_save_one_load": [ |
|
[ |
|
"tests/test_handler_checkpoint_loader.py", |
|
[ |
|
"TestHandlerCheckpointLoader", |
|
"test_two_save_one_load" |
|
] |
|
] |
|
], |
|
"test_save_single_device_load_multi_devices": [ |
|
[ |
|
"tests/test_handler_checkpoint_loader.py", |
|
[ |
|
"TestHandlerCheckpointLoader", |
|
"test_save_single_device_load_multi_devices" |
|
] |
|
] |
|
], |
|
"_train_func": [ |
|
[ |
|
"tests/test_handler_checkpoint_saver.py", |
|
[ |
|
"TestHandlerCheckpointSaver", |
|
"test_file", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_checkpoint_saver.py", |
|
[ |
|
"TestHandlerCheckpointSaver", |
|
"test_exception", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_classification_saver.py", |
|
[ |
|
"TestHandlerClassificationSaver", |
|
"test_saved_content", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_lr_scheduler.py", |
|
[ |
|
"TestHandlerLrSchedule", |
|
"test_content", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_segmentation_saver.py", |
|
[ |
|
"TestHandlerSegmentationSaver", |
|
"test_saved_content", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_segmentation_saver.py", |
|
[ |
|
"TestHandlerSegmentationSaver", |
|
"test_save_resized_content", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_smartcache.py", |
|
[ |
|
"TestHandlerSmartCache", |
|
"test_content", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_metrics_print", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_loss_print", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_loss_dict", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_loss_file", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_exception", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_tb_image.py", |
|
[ |
|
"TestHandlerTBImage", |
|
"test_tb_image_shape", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_tb_stats.py", |
|
[ |
|
"TestHandlerTBStats", |
|
"test_metrics_print", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_tb_stats.py", |
|
[ |
|
"TestHandlerTBStats", |
|
"test_metrics_writer", |
|
"with_tempfile_TemporaryDi", |
|
"_train_func" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_validation.py", |
|
[ |
|
"TestHandlerValidation", |
|
"test_content", |
|
"_train_func" |
|
] |
|
] |
|
], |
|
"test_exception": [ |
|
[ |
|
"tests/test_handler_checkpoint_saver.py", |
|
[ |
|
"TestHandlerCheckpointSaver", |
|
"test_exception" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_exception" |
|
] |
|
] |
|
], |
|
"run_validation": [ |
|
[ |
|
"tests/test_handler_lr_scheduler.py", |
|
[ |
|
"TestHandlerLrSchedule", |
|
"test_content", |
|
"run_validation" |
|
] |
|
] |
|
], |
|
"_reduce_lr_on_plateau": [ |
|
[ |
|
"tests/test_handler_lr_scheduler.py", |
|
[ |
|
"TestHandlerLrSchedule", |
|
"test_content", |
|
"_reduce_lr_on_plateau" |
|
] |
|
] |
|
], |
|
"_reduce_on_step": [ |
|
[ |
|
"tests/test_handler_lr_scheduler.py", |
|
[ |
|
"TestHandlerLrSchedule", |
|
"test_content", |
|
"_reduce_on_step" |
|
] |
|
] |
|
], |
|
"test_compute": [ |
|
[ |
|
"tests/test_handler_mean_dice.py", |
|
[ |
|
"TestHandlerMeanDice", |
|
"test_compute" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_rocauc.py", |
|
[ |
|
"TestHandlerROCAUC", |
|
"test_compute" |
|
] |
|
] |
|
], |
|
"test_misconfig": [ |
|
[ |
|
"tests/test_handler_mean_dice.py", |
|
[ |
|
"TestHandlerMeanDice", |
|
"test_misconfig" |
|
] |
|
] |
|
], |
|
"test_shape_mismatch": [ |
|
[ |
|
"tests/test_handler_mean_dice.py", |
|
[ |
|
"TestHandlerMeanDice", |
|
"test_shape_mismatch" |
|
] |
|
] |
|
], |
|
"main": [ |
|
[ |
|
"tests/test_handler_rocauc_dist.py", |
|
[ |
|
"main" |
|
] |
|
] |
|
], |
|
"test_save_resized_content": [ |
|
[ |
|
"tests/test_handler_segmentation_saver.py", |
|
[ |
|
"TestHandlerSegmentationSaver", |
|
"test_save_resized_content" |
|
] |
|
] |
|
], |
|
"_update_metric": [ |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_metrics_print", |
|
"_update_metric" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_tb_stats.py", |
|
[ |
|
"TestHandlerTBStats", |
|
"test_metrics_print", |
|
"with_tempfile_TemporaryDi", |
|
"_update_metric" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_tb_stats.py", |
|
[ |
|
"TestHandlerTBStats", |
|
"test_metrics_writer", |
|
"with_tempfile_TemporaryDi", |
|
"_update_metric" |
|
] |
|
] |
|
], |
|
"test_metrics_print": [ |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_metrics_print" |
|
] |
|
], |
|
[ |
|
"tests/test_handler_tb_stats.py", |
|
[ |
|
"TestHandlerTBStats", |
|
"test_metrics_print" |
|
] |
|
] |
|
], |
|
"test_loss_print": [ |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_loss_print" |
|
] |
|
] |
|
], |
|
"test_loss_dict": [ |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_loss_dict" |
|
] |
|
] |
|
], |
|
"test_loss_file": [ |
|
[ |
|
"tests/test_handler_stats.py", |
|
[ |
|
"TestHandlerStats", |
|
"test_loss_file" |
|
] |
|
] |
|
], |
|
"test_tb_image_shape": [ |
|
[ |
|
"tests/test_handler_tb_image.py", |
|
[ |
|
"TestHandlerTBImage", |
|
"test_tb_image_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_plot_2d_or_3d_image.py", |
|
[ |
|
"TestPlot2dOr3dImage", |
|
"test_tb_image_shape" |
|
] |
|
] |
|
], |
|
"test_metrics_writer": [ |
|
[ |
|
"tests/test_handler_tb_stats.py", |
|
[ |
|
"TestHandlerTBStats", |
|
"test_metrics_writer" |
|
] |
|
] |
|
], |
|
"create_spherical_seg_3d": [ |
|
[ |
|
"tests/test_hausdorff_distance.py", |
|
[ |
|
"create_spherical_seg_3d" |
|
] |
|
], |
|
[ |
|
"tests/test_surface_distance.py", |
|
[ |
|
"create_spherical_seg_3d" |
|
] |
|
] |
|
], |
|
"test_correct": [ |
|
[ |
|
"tests/test_header_correct.py", |
|
[ |
|
"TestCorrection", |
|
"test_correct" |
|
] |
|
], |
|
[ |
|
"tests/test_zoom_affine.py", |
|
[ |
|
"TestZoomAffine", |
|
"test_correct" |
|
] |
|
] |
|
], |
|
"test_identity": [ |
|
[ |
|
"tests/test_identity.py", |
|
[ |
|
"TestIdentity", |
|
"test_identity" |
|
] |
|
] |
|
], |
|
"test_identityd": [ |
|
[ |
|
"tests/test_identityd.py", |
|
[ |
|
"TestIdentityd", |
|
"test_identityd" |
|
] |
|
] |
|
], |
|
"test_write_gray": [ |
|
[ |
|
"tests/test_img2tensorboard.py", |
|
[ |
|
"TestImg2Tensorboard", |
|
"test_write_gray" |
|
] |
|
], |
|
[ |
|
"tests/test_png_rw.py", |
|
[ |
|
"TestPngWrite", |
|
"test_write_gray" |
|
] |
|
] |
|
], |
|
"run_training_test": [ |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"run_training_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_segmentation_3d.py", |
|
[ |
|
"run_training_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows.py", |
|
[ |
|
"run_training_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows_gan.py", |
|
[ |
|
"run_training_test" |
|
] |
|
] |
|
], |
|
"run_inference_test": [ |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"run_inference_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_segmentation_3d.py", |
|
[ |
|
"run_inference_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows.py", |
|
[ |
|
"run_inference_test" |
|
] |
|
] |
|
], |
|
"setUp": [ |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"IntegrationClassification2D", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_determinism.py", |
|
[ |
|
"TestDeterminism", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_segmentation_3d.py", |
|
[ |
|
"IntegrationSegmentation3D", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_sliding_window.py", |
|
[ |
|
"TestIntegrationSlidingWindow", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"TestSpatialTransformerCore", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows.py", |
|
[ |
|
"IntegrationWorkflows", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows_gan.py", |
|
[ |
|
"IntegrationWorkflowsGAN", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/test_seg_loss_integration.py", |
|
[ |
|
"TestSegLossIntegration", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"NumpyImageTestCase2D", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"TorchImageTestCase2D", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"NumpyImageTestCase3D", |
|
"setUp" |
|
] |
|
], |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"TorchImageTestCase3D", |
|
"setUp" |
|
] |
|
] |
|
], |
|
"tearDown": [ |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"IntegrationClassification2D", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_determinism.py", |
|
[ |
|
"TestDeterminism", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_segmentation_3d.py", |
|
[ |
|
"IntegrationSegmentation3D", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_sliding_window.py", |
|
[ |
|
"TestIntegrationSlidingWindow", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"TestSpatialTransformerCore", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows.py", |
|
[ |
|
"IntegrationWorkflows", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows_gan.py", |
|
[ |
|
"IntegrationWorkflowsGAN", |
|
"tearDown" |
|
] |
|
], |
|
[ |
|
"tests/test_seg_loss_integration.py", |
|
[ |
|
"TestSegLossIntegration", |
|
"tearDown" |
|
] |
|
] |
|
], |
|
"test_training": [ |
|
[ |
|
"tests/test_integration_classification_2d.py", |
|
[ |
|
"IntegrationClassification2D", |
|
"test_training" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_determinism.py", |
|
[ |
|
"TestDeterminism", |
|
"test_training" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_segmentation_3d.py", |
|
[ |
|
"IntegrationSegmentation3D", |
|
"test_training" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_sliding_window.py", |
|
[ |
|
"TestIntegrationSlidingWindow", |
|
"test_training" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"TestSpatialTransformerCore", |
|
"test_training" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows.py", |
|
[ |
|
"IntegrationWorkflows", |
|
"test_training" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_workflows_gan.py", |
|
[ |
|
"IntegrationWorkflowsGAN", |
|
"test_training" |
|
] |
|
] |
|
], |
|
"run_test": [ |
|
[ |
|
"tests/test_integration_determinism.py", |
|
[ |
|
"run_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_sliding_window.py", |
|
[ |
|
"run_test" |
|
] |
|
], |
|
[ |
|
"tests/test_integration_unet_2d.py", |
|
[ |
|
"run_test" |
|
] |
|
] |
|
], |
|
"_sliding_window_processor": [ |
|
[ |
|
"tests/test_integration_sliding_window.py", |
|
[ |
|
"run_test", |
|
"_sliding_window_processor" |
|
] |
|
] |
|
], |
|
"stn_ref": [ |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"STNBenchmark", |
|
"stn_ref" |
|
] |
|
] |
|
], |
|
"stn": [ |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"STNBenchmark", |
|
"stn" |
|
] |
|
] |
|
], |
|
"compare_2d": [ |
|
[ |
|
"tests/test_integration_stn.py", |
|
[ |
|
"compare_2d" |
|
] |
|
] |
|
], |
|
"test_unet_training": [ |
|
[ |
|
"tests/test_integration_unet_2d.py", |
|
[ |
|
"TestIntegrationUnet2D", |
|
"test_unet_training" |
|
] |
|
] |
|
], |
|
"discriminator_loss": [ |
|
[ |
|
"tests/test_integration_workflows_gan.py", |
|
[ |
|
"run_training_test", |
|
"discriminator_loss" |
|
] |
|
] |
|
], |
|
"generator_loss": [ |
|
[ |
|
"tests/test_integration_workflows_gan.py", |
|
[ |
|
"run_training_test", |
|
"generator_loss" |
|
] |
|
] |
|
], |
|
"test_raise_exception": [ |
|
[ |
|
"tests/test_keep_largest_connected_component.py", |
|
[ |
|
"TestKeepLargestConnectedComponent", |
|
"test_raise_exception" |
|
] |
|
], |
|
[ |
|
"tests/test_keep_largest_connected_componentd.py", |
|
[ |
|
"TestKeepLargestConnectedComponentd", |
|
"test_raise_exception" |
|
] |
|
] |
|
], |
|
"gen_fixed_cube": [ |
|
[ |
|
"tests/test_label_to_contour.py", |
|
[ |
|
"gen_fixed_cube" |
|
] |
|
], |
|
[ |
|
"tests/test_label_to_contourd.py", |
|
[ |
|
"gen_fixed_cube" |
|
] |
|
] |
|
], |
|
"gen_fixed_img": [ |
|
[ |
|
"tests/test_label_to_contour.py", |
|
[ |
|
"gen_fixed_img" |
|
] |
|
], |
|
[ |
|
"tests/test_label_to_contourd.py", |
|
[ |
|
"gen_fixed_img" |
|
] |
|
] |
|
], |
|
"test_contour": [ |
|
[ |
|
"tests/test_label_to_contour.py", |
|
[ |
|
"TestContour", |
|
"test_contour" |
|
] |
|
], |
|
[ |
|
"tests/test_label_to_contourd.py", |
|
[ |
|
"TestContourd", |
|
"test_contour" |
|
] |
|
] |
|
], |
|
"identity_func": [ |
|
[ |
|
"tests/test_lambda.py", |
|
[ |
|
"TestLambda", |
|
"test_lambda_identity", |
|
"identity_func" |
|
] |
|
], |
|
[ |
|
"tests/test_lambdad.py", |
|
[ |
|
"TestLambdad", |
|
"test_lambdad_identity", |
|
"identity_func" |
|
] |
|
] |
|
], |
|
"test_lambda_identity": [ |
|
[ |
|
"tests/test_lambda.py", |
|
[ |
|
"TestLambda", |
|
"test_lambda_identity" |
|
] |
|
] |
|
], |
|
"slice_func": [ |
|
[ |
|
"tests/test_lambda.py", |
|
[ |
|
"TestLambda", |
|
"test_lambda_slicing", |
|
"slice_func" |
|
] |
|
], |
|
[ |
|
"tests/test_lambdad.py", |
|
[ |
|
"TestLambdad", |
|
"test_lambdad_slicing", |
|
"slice_func" |
|
] |
|
] |
|
], |
|
"test_lambda_slicing": [ |
|
[ |
|
"tests/test_lambda.py", |
|
[ |
|
"TestLambda", |
|
"test_lambda_slicing" |
|
] |
|
] |
|
], |
|
"test_lambdad_identity": [ |
|
[ |
|
"tests/test_lambdad.py", |
|
[ |
|
"TestLambdad", |
|
"test_lambdad_identity" |
|
] |
|
] |
|
], |
|
"test_lambdad_slicing": [ |
|
[ |
|
"tests/test_lambdad.py", |
|
[ |
|
"TestLambdad", |
|
"test_lambdad_slicing" |
|
] |
|
] |
|
], |
|
"test_value_cuda": [ |
|
[ |
|
"tests/test_lltm.py", |
|
[ |
|
"TestLLTM", |
|
"test_value_cuda" |
|
] |
|
] |
|
], |
|
"test_seg_values": [ |
|
[ |
|
"tests/test_load_decathlon_datalist.py", |
|
[ |
|
"TestLoadDecathlonDatalist", |
|
"test_seg_values" |
|
] |
|
] |
|
], |
|
"test_cls_values": [ |
|
[ |
|
"tests/test_load_decathlon_datalist.py", |
|
[ |
|
"TestLoadDecathlonDatalist", |
|
"test_cls_values" |
|
] |
|
] |
|
], |
|
"test_seg_no_basedir": [ |
|
[ |
|
"tests/test_load_decathlon_datalist.py", |
|
[ |
|
"TestLoadDecathlonDatalist", |
|
"test_seg_no_basedir" |
|
] |
|
] |
|
], |
|
"test_seg_no_labels": [ |
|
[ |
|
"tests/test_load_decathlon_datalist.py", |
|
[ |
|
"TestLoadDecathlonDatalist", |
|
"test_seg_no_labels" |
|
] |
|
] |
|
], |
|
"test_nibabel_reader": [ |
|
[ |
|
"tests/test_load_image.py", |
|
[ |
|
"TestLoadImage", |
|
"test_nibabel_reader" |
|
] |
|
] |
|
], |
|
"test_itk_reader": [ |
|
[ |
|
"tests/test_load_image.py", |
|
[ |
|
"TestLoadImage", |
|
"test_itk_reader" |
|
] |
|
] |
|
], |
|
"test_itk_dicom_series_reader": [ |
|
[ |
|
"tests/test_load_image.py", |
|
[ |
|
"TestLoadImage", |
|
"test_itk_dicom_series_reader" |
|
] |
|
] |
|
], |
|
"test_load_png": [ |
|
[ |
|
"tests/test_load_image.py", |
|
[ |
|
"TestLoadImage", |
|
"test_load_png" |
|
] |
|
] |
|
], |
|
"test_register": [ |
|
[ |
|
"tests/test_load_image.py", |
|
[ |
|
"TestLoadImage", |
|
"test_register" |
|
] |
|
], |
|
[ |
|
"tests/test_load_imaged.py", |
|
[ |
|
"TestLoadImaged", |
|
"test_register" |
|
] |
|
] |
|
], |
|
"test_kwargs": [ |
|
[ |
|
"tests/test_load_image.py", |
|
[ |
|
"TestLoadImage", |
|
"test_kwargs" |
|
] |
|
], |
|
[ |
|
"tests/test_numpy_reader.py", |
|
[ |
|
"TestNumpyReader", |
|
"test_kwargs" |
|
] |
|
] |
|
], |
|
"test_npy": [ |
|
[ |
|
"tests/test_load_numpy.py", |
|
[ |
|
"TestLoadNumpy", |
|
"test_npy" |
|
] |
|
], |
|
[ |
|
"tests/test_load_numpyd.py", |
|
[ |
|
"TestLoadNumpyd", |
|
"test_npy" |
|
] |
|
], |
|
[ |
|
"tests/test_numpy_reader.py", |
|
[ |
|
"TestNumpyReader", |
|
"test_npy" |
|
] |
|
] |
|
], |
|
"test_npz1": [ |
|
[ |
|
"tests/test_load_numpy.py", |
|
[ |
|
"TestLoadNumpy", |
|
"test_npz1" |
|
] |
|
], |
|
[ |
|
"tests/test_load_numpyd.py", |
|
[ |
|
"TestLoadNumpyd", |
|
"test_npz1" |
|
] |
|
], |
|
[ |
|
"tests/test_numpy_reader.py", |
|
[ |
|
"TestNumpyReader", |
|
"test_npz1" |
|
] |
|
] |
|
], |
|
"test_npz2": [ |
|
[ |
|
"tests/test_load_numpy.py", |
|
[ |
|
"TestLoadNumpy", |
|
"test_npz2" |
|
] |
|
], |
|
[ |
|
"tests/test_load_numpyd.py", |
|
[ |
|
"TestLoadNumpyd", |
|
"test_npz2" |
|
] |
|
], |
|
[ |
|
"tests/test_numpy_reader.py", |
|
[ |
|
"TestNumpyReader", |
|
"test_npz2" |
|
] |
|
] |
|
], |
|
"test_npz3": [ |
|
[ |
|
"tests/test_load_numpy.py", |
|
[ |
|
"TestLoadNumpy", |
|
"test_npz3" |
|
] |
|
], |
|
[ |
|
"tests/test_load_numpyd.py", |
|
[ |
|
"TestLoadNumpyd", |
|
"test_npz3" |
|
] |
|
], |
|
[ |
|
"tests/test_numpy_reader.py", |
|
[ |
|
"TestNumpyReader", |
|
"test_npz3" |
|
] |
|
] |
|
], |
|
"test_npy_pickle": [ |
|
[ |
|
"tests/test_load_numpy.py", |
|
[ |
|
"TestLoadNumpy", |
|
"test_npy_pickle" |
|
] |
|
], |
|
[ |
|
"tests/test_load_numpyd.py", |
|
[ |
|
"TestLoadNumpyd", |
|
"test_npy_pickle" |
|
] |
|
], |
|
[ |
|
"tests/test_numpy_reader.py", |
|
[ |
|
"TestNumpyReader", |
|
"test_npy_pickle" |
|
] |
|
] |
|
], |
|
"test_load_spacingd": [ |
|
[ |
|
"tests/test_load_spacing_orientation.py", |
|
[ |
|
"TestLoadSpacingOrientation", |
|
"test_load_spacingd" |
|
] |
|
] |
|
], |
|
"test_load_spacingd_rotate": [ |
|
[ |
|
"tests/test_load_spacing_orientation.py", |
|
[ |
|
"TestLoadSpacingOrientation", |
|
"test_load_spacingd_rotate" |
|
] |
|
] |
|
], |
|
"test_load_spacingd_non_diag": [ |
|
[ |
|
"tests/test_load_spacing_orientation.py", |
|
[ |
|
"TestLoadSpacingOrientation", |
|
"test_load_spacingd_non_diag" |
|
] |
|
] |
|
], |
|
"test_load_spacingd_rotate_non_diag": [ |
|
[ |
|
"tests/test_load_spacing_orientation.py", |
|
[ |
|
"TestLoadSpacingOrientation", |
|
"test_load_spacingd_rotate_non_diag" |
|
] |
|
] |
|
], |
|
"test_load_spacingd_rotate_non_diag_ornt": [ |
|
[ |
|
"tests/test_load_spacing_orientation.py", |
|
[ |
|
"TestLoadSpacingOrientation", |
|
"test_load_spacingd_rotate_non_diag_ornt" |
|
] |
|
] |
|
], |
|
"test_load_spacingd_non_diag_ornt": [ |
|
[ |
|
"tests/test_load_spacing_orientation.py", |
|
[ |
|
"TestLoadSpacingOrientation", |
|
"test_load_spacingd_non_diag_ornt" |
|
] |
|
] |
|
], |
|
"test_keys": [ |
|
[ |
|
"tests/test_map_transform.py", |
|
[ |
|
"TestRandomizable", |
|
"test_keys" |
|
] |
|
] |
|
], |
|
"test_wrong_keys": [ |
|
[ |
|
"tests/test_map_transform.py", |
|
[ |
|
"TestRandomizable", |
|
"test_wrong_keys" |
|
] |
|
] |
|
], |
|
"test_cuda_value": [ |
|
[ |
|
"tests/test_mean_ensemble.py", |
|
[ |
|
"TestMeanEnsemble", |
|
"test_cuda_value" |
|
] |
|
], |
|
[ |
|
"tests/test_mean_ensembled.py", |
|
[ |
|
"TestMeanEnsembled", |
|
"test_cuda_value" |
|
] |
|
], |
|
[ |
|
"tests/test_vote_ensemble.py", |
|
[ |
|
"TestVoteEnsemble", |
|
"test_cuda_value" |
|
] |
|
], |
|
[ |
|
"tests/test_vote_ensembled.py", |
|
[ |
|
"TestVoteEnsembled", |
|
"test_cuda_value" |
|
] |
|
] |
|
], |
|
"test_dataset": [ |
|
[ |
|
"tests/test_nifti_dataset.py", |
|
[ |
|
"TestNiftiDataset", |
|
"test_dataset" |
|
] |
|
] |
|
], |
|
"test_revise_q": [ |
|
[ |
|
"tests/test_nifti_header_revise.py", |
|
[ |
|
"TestRectifyHeaderSformQform", |
|
"test_revise_q" |
|
] |
|
] |
|
], |
|
"test_revise_both": [ |
|
[ |
|
"tests/test_nifti_header_revise.py", |
|
[ |
|
"TestRectifyHeaderSformQform", |
|
"test_revise_both" |
|
] |
|
] |
|
], |
|
"test_orientation": [ |
|
[ |
|
"tests/test_nifti_rw.py", |
|
[ |
|
"TestNiftiLoadRead", |
|
"test_orientation" |
|
] |
|
] |
|
], |
|
"test_consistency": [ |
|
[ |
|
"tests/test_nifti_rw.py", |
|
[ |
|
"TestNiftiLoadRead", |
|
"test_consistency" |
|
] |
|
] |
|
], |
|
"test_write_2d": [ |
|
[ |
|
"tests/test_nifti_rw.py", |
|
[ |
|
"TestNiftiLoadRead", |
|
"test_write_2d" |
|
] |
|
] |
|
], |
|
"test_write_3d": [ |
|
[ |
|
"tests/test_nifti_rw.py", |
|
[ |
|
"TestNiftiLoadRead", |
|
"test_write_3d" |
|
] |
|
] |
|
], |
|
"test_write_4d": [ |
|
[ |
|
"tests/test_nifti_rw.py", |
|
[ |
|
"TestNiftiLoadRead", |
|
"test_write_4d" |
|
] |
|
] |
|
], |
|
"test_write_5d": [ |
|
[ |
|
"tests/test_nifti_rw.py", |
|
[ |
|
"TestNiftiLoadRead", |
|
"test_write_5d" |
|
] |
|
] |
|
], |
|
"test_saved_resize_content": [ |
|
[ |
|
"tests/test_nifti_saver.py", |
|
[ |
|
"TestNiftiSaver", |
|
"test_saved_resize_content" |
|
] |
|
] |
|
], |
|
"test_saved_3d_resize_content": [ |
|
[ |
|
"tests/test_nifti_saver.py", |
|
[ |
|
"TestNiftiSaver", |
|
"test_saved_3d_resize_content" |
|
] |
|
] |
|
], |
|
"test_default": [ |
|
[ |
|
"tests/test_normalize_intensity.py", |
|
[ |
|
"TestNormalizeIntensity", |
|
"test_default" |
|
] |
|
], |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_default" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate90.py", |
|
[ |
|
"TestRandRotate90", |
|
"test_default" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate90d.py", |
|
[ |
|
"TestRandRotate90d", |
|
"test_default" |
|
] |
|
], |
|
[ |
|
"tests/test_randomizable.py", |
|
[ |
|
"TestRandomizable", |
|
"test_default" |
|
] |
|
] |
|
], |
|
"test_nonzero": [ |
|
[ |
|
"tests/test_normalize_intensity.py", |
|
[ |
|
"TestNormalizeIntensity", |
|
"test_nonzero" |
|
] |
|
], |
|
[ |
|
"tests/test_normalize_intensityd.py", |
|
[ |
|
"TestNormalizeIntensityd", |
|
"test_nonzero" |
|
] |
|
] |
|
], |
|
"test_channel_wise": [ |
|
[ |
|
"tests/test_normalize_intensity.py", |
|
[ |
|
"TestNormalizeIntensity", |
|
"test_channel_wise" |
|
] |
|
], |
|
[ |
|
"tests/test_normalize_intensityd.py", |
|
[ |
|
"TestNormalizeIntensityd", |
|
"test_channel_wise" |
|
] |
|
] |
|
], |
|
"test_value_errors": [ |
|
[ |
|
"tests/test_normalize_intensity.py", |
|
[ |
|
"TestNormalizeIntensity", |
|
"test_value_errors" |
|
] |
|
] |
|
], |
|
"test_image_normalize_intensityd": [ |
|
[ |
|
"tests/test_normalize_intensityd.py", |
|
[ |
|
"TestNormalizeIntensityd", |
|
"test_image_normalize_intensityd" |
|
] |
|
] |
|
], |
|
"build_test_cases": [ |
|
[ |
|
"tests/test_optim_novograd.py", |
|
[ |
|
"build_test_cases" |
|
] |
|
] |
|
], |
|
"fn": [ |
|
[ |
|
"tests/test_optim_novograd.py", |
|
[ |
|
"TestNovograd", |
|
"test_step", |
|
"fn" |
|
] |
|
] |
|
], |
|
"test_step": [ |
|
[ |
|
"tests/test_optim_novograd.py", |
|
[ |
|
"TestNovograd", |
|
"test_step" |
|
] |
|
] |
|
], |
|
"test_import_valid": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_import_valid" |
|
] |
|
] |
|
], |
|
"test_import_wrong_number": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_import_wrong_number" |
|
] |
|
] |
|
], |
|
"test_import_good_number": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_import_good_number" |
|
] |
|
] |
|
], |
|
"test_import_exact": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_import_exact" |
|
] |
|
] |
|
], |
|
"test_import_method": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_import_method" |
|
] |
|
] |
|
], |
|
"versioning": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_additional", |
|
"versioning" |
|
] |
|
] |
|
], |
|
"test_additional": [ |
|
[ |
|
"tests/test_optional_import.py", |
|
[ |
|
"TestOptionalImport", |
|
"test_additional" |
|
] |
|
] |
|
], |
|
"test_ornt": [ |
|
[ |
|
"tests/test_orientation.py", |
|
[ |
|
"TestOrientationCase", |
|
"test_ornt" |
|
] |
|
] |
|
], |
|
"test_bad_params": [ |
|
[ |
|
"tests/test_orientation.py", |
|
[ |
|
"TestOrientationCase", |
|
"test_bad_params" |
|
] |
|
] |
|
], |
|
"test_orntd": [ |
|
[ |
|
"tests/test_orientationd.py", |
|
[ |
|
"TestOrientationdCase", |
|
"test_orntd" |
|
] |
|
] |
|
], |
|
"test_orntd_3d": [ |
|
[ |
|
"tests/test_orientationd.py", |
|
[ |
|
"TestOrientationdCase", |
|
"test_orntd_3d" |
|
] |
|
] |
|
], |
|
"test_orntd_2d": [ |
|
[ |
|
"tests/test_orientationd.py", |
|
[ |
|
"TestOrientationdCase", |
|
"test_orntd_2d" |
|
] |
|
] |
|
], |
|
"test_orntd_1d": [ |
|
[ |
|
"tests/test_orientationd.py", |
|
[ |
|
"TestOrientationdCase", |
|
"test_orntd_1d" |
|
] |
|
] |
|
], |
|
"test_orntd_canonical": [ |
|
[ |
|
"tests/test_orientationd.py", |
|
[ |
|
"TestOrientationdCase", |
|
"test_orntd_canonical" |
|
] |
|
] |
|
], |
|
"fake_loss": [ |
|
[ |
|
"tests/test_parallel_execution.py", |
|
[ |
|
"fake_loss" |
|
] |
|
] |
|
], |
|
"fake_data_stream": [ |
|
[ |
|
"tests/test_parallel_execution.py", |
|
[ |
|
"fake_data_stream" |
|
] |
|
] |
|
], |
|
"test_single_gpu": [ |
|
[ |
|
"tests/test_parallel_execution.py", |
|
[ |
|
"TestParallelExecution", |
|
"test_single_gpu" |
|
] |
|
] |
|
], |
|
"test_multi_gpu": [ |
|
[ |
|
"tests/test_parallel_execution.py", |
|
[ |
|
"TestParallelExecution", |
|
"test_multi_gpu" |
|
] |
|
] |
|
], |
|
"test_cpu": [ |
|
[ |
|
"tests/test_parallel_execution.py", |
|
[ |
|
"TestParallelExecution", |
|
"test_cpu" |
|
] |
|
] |
|
], |
|
"identity": [ |
|
[ |
|
"tests/test_patch_dataset.py", |
|
[ |
|
"identity" |
|
] |
|
] |
|
], |
|
"test_loading_array": [ |
|
[ |
|
"tests/test_patch_dataset.py", |
|
[ |
|
"TestPatchDataset", |
|
"test_loading_array" |
|
] |
|
] |
|
], |
|
"test_shape_value": [ |
|
[ |
|
"tests/test_pil_reader.py", |
|
[ |
|
"TestPNGReader", |
|
"test_shape_value" |
|
] |
|
] |
|
], |
|
"test_converter": [ |
|
[ |
|
"tests/test_pil_reader.py", |
|
[ |
|
"TestPNGReader", |
|
"test_converter" |
|
] |
|
] |
|
], |
|
"test_write_gray_1height": [ |
|
[ |
|
"tests/test_png_rw.py", |
|
[ |
|
"TestPngWrite", |
|
"test_write_gray_1height" |
|
] |
|
] |
|
], |
|
"test_write_gray_1channel": [ |
|
[ |
|
"tests/test_png_rw.py", |
|
[ |
|
"TestPngWrite", |
|
"test_write_gray_1channel" |
|
] |
|
] |
|
], |
|
"test_write_rgb": [ |
|
[ |
|
"tests/test_png_rw.py", |
|
[ |
|
"TestPngWrite", |
|
"test_write_rgb" |
|
] |
|
] |
|
], |
|
"test_write_2channels": [ |
|
[ |
|
"tests/test_png_rw.py", |
|
[ |
|
"TestPngWrite", |
|
"test_write_2channels" |
|
] |
|
] |
|
], |
|
"test_write_output_shape": [ |
|
[ |
|
"tests/test_png_rw.py", |
|
[ |
|
"TestPngWrite", |
|
"test_write_output_shape" |
|
] |
|
] |
|
], |
|
"test_saved_content_three_channel": [ |
|
[ |
|
"tests/test_png_saver.py", |
|
[ |
|
"TestPNGSaver", |
|
"test_saved_content_three_channel" |
|
] |
|
] |
|
], |
|
"test_saved_content_spatial_size": [ |
|
[ |
|
"tests/test_png_saver.py", |
|
[ |
|
"TestPNGSaver", |
|
"test_saved_content_spatial_size" |
|
] |
|
] |
|
], |
|
"test_floats": [ |
|
[ |
|
"tests/test_polyval.py", |
|
[ |
|
"TestPolyval", |
|
"test_floats" |
|
] |
|
] |
|
], |
|
"test_gpu": [ |
|
[ |
|
"tests/test_polyval.py", |
|
[ |
|
"TestPolyval", |
|
"test_gpu" |
|
] |
|
] |
|
], |
|
"test_output_str": [ |
|
[ |
|
"tests/test_query_memory.py", |
|
[ |
|
"TestQueryMemory", |
|
"test_output_str" |
|
] |
|
] |
|
], |
|
"test_rand_affine": [ |
|
[ |
|
"tests/test_rand_affine.py", |
|
[ |
|
"TestRandAffine", |
|
"test_rand_affine" |
|
] |
|
] |
|
], |
|
"test_rand_affine_grid": [ |
|
[ |
|
"tests/test_rand_affine_grid.py", |
|
[ |
|
"TestRandAffineGrid", |
|
"test_rand_affine_grid" |
|
] |
|
] |
|
], |
|
"test_rand_affined": [ |
|
[ |
|
"tests/test_rand_affined.py", |
|
[ |
|
"TestRandAffined", |
|
"test_rand_affined" |
|
] |
|
] |
|
], |
|
"test_rand_deform_grid": [ |
|
[ |
|
"tests/test_rand_deform_grid.py", |
|
[ |
|
"TestRandDeformGrid", |
|
"test_rand_deform_grid" |
|
] |
|
] |
|
], |
|
"test_rand_2d_elastic": [ |
|
[ |
|
"tests/test_rand_elastic_2d.py", |
|
[ |
|
"TestRand2DElastic", |
|
"test_rand_2d_elastic" |
|
] |
|
] |
|
], |
|
"test_rand_3d_elastic": [ |
|
[ |
|
"tests/test_rand_elastic_3d.py", |
|
[ |
|
"TestRand3DElastic", |
|
"test_rand_3d_elastic" |
|
] |
|
] |
|
], |
|
"test_rand_2d_elasticd": [ |
|
[ |
|
"tests/test_rand_elasticd_2d.py", |
|
[ |
|
"TestRand2DElasticd", |
|
"test_rand_2d_elasticd" |
|
] |
|
] |
|
], |
|
"test_rand_3d_elasticd": [ |
|
[ |
|
"tests/test_rand_elasticd_3d.py", |
|
[ |
|
"TestRand3DElasticd", |
|
"test_rand_3d_elasticd" |
|
] |
|
] |
|
], |
|
"test_rand_histogram_shift": [ |
|
[ |
|
"tests/test_rand_histogram_shift.py", |
|
[ |
|
"TestRandHistogramShift", |
|
"test_rand_histogram_shift" |
|
] |
|
] |
|
], |
|
"test_rand_histogram_shiftd": [ |
|
[ |
|
"tests/test_rand_histogram_shiftd.py", |
|
[ |
|
"TestRandHistogramShiftD", |
|
"test_rand_histogram_shiftd" |
|
] |
|
] |
|
], |
|
"test_k": [ |
|
[ |
|
"tests/test_rand_rotate90.py", |
|
[ |
|
"TestRandRotate90", |
|
"test_k" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate90d.py", |
|
[ |
|
"TestRandRotate90d", |
|
"test_k" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90.py", |
|
[ |
|
"TestRotate90", |
|
"test_k" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90d.py", |
|
[ |
|
"TestRotate90d", |
|
"test_k" |
|
] |
|
] |
|
], |
|
"test_spatial_axes": [ |
|
[ |
|
"tests/test_rand_rotate90.py", |
|
[ |
|
"TestRandRotate90", |
|
"test_spatial_axes" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate90d.py", |
|
[ |
|
"TestRandRotate90d", |
|
"test_spatial_axes" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90.py", |
|
[ |
|
"TestRotate90", |
|
"test_spatial_axes" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90d.py", |
|
[ |
|
"TestRotate90d", |
|
"test_spatial_axes" |
|
] |
|
] |
|
], |
|
"test_prob_k_spatial_axes": [ |
|
[ |
|
"tests/test_rand_rotate90.py", |
|
[ |
|
"TestRandRotate90", |
|
"test_prob_k_spatial_axes" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_rotate90d.py", |
|
[ |
|
"TestRandRotate90d", |
|
"test_prob_k_spatial_axes" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90.py", |
|
[ |
|
"TestRotate90", |
|
"test_prob_k_spatial_axes" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90d.py", |
|
[ |
|
"TestRotate90d", |
|
"test_prob_k_spatial_axes" |
|
] |
|
] |
|
], |
|
"test_no_key": [ |
|
[ |
|
"tests/test_rand_rotate90d.py", |
|
[ |
|
"TestRandRotate90d", |
|
"test_no_key" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90d.py", |
|
[ |
|
"TestRotate90d", |
|
"test_no_key" |
|
] |
|
] |
|
], |
|
"test_correct_shapes": [ |
|
[ |
|
"tests/test_rand_rotated.py", |
|
[ |
|
"TestRandRotated3D", |
|
"test_correct_shapes" |
|
] |
|
] |
|
], |
|
"test_keep_size": [ |
|
[ |
|
"tests/test_rand_zoom.py", |
|
[ |
|
"TestRandZoom", |
|
"test_keep_size" |
|
] |
|
], |
|
[ |
|
"tests/test_rand_zoomd.py", |
|
[ |
|
"TestRandZoomd", |
|
"test_keep_size" |
|
] |
|
], |
|
[ |
|
"tests/test_zoom.py", |
|
[ |
|
"TestZoom", |
|
"test_keep_size" |
|
] |
|
], |
|
[ |
|
"tests/test_zoomd.py", |
|
[ |
|
"TestZoomd", |
|
"test_keep_size" |
|
] |
|
] |
|
], |
|
"test_seed": [ |
|
[ |
|
"tests/test_randomizable.py", |
|
[ |
|
"TestRandomizable", |
|
"test_seed" |
|
] |
|
] |
|
], |
|
"test_state": [ |
|
[ |
|
"tests/test_randomizable.py", |
|
[ |
|
"TestRandomizable", |
|
"test_state" |
|
] |
|
] |
|
], |
|
"test_resample": [ |
|
[ |
|
"tests/test_resampler.py", |
|
[ |
|
"TestResample", |
|
"test_resample" |
|
] |
|
] |
|
], |
|
"test_correct_shape": [ |
|
[ |
|
"tests/test_rotate.py", |
|
[ |
|
"TestRotate3D", |
|
"test_correct_shape" |
|
] |
|
] |
|
], |
|
"test_ill_case": [ |
|
[ |
|
"tests/test_rotate.py", |
|
[ |
|
"TestRotate3D", |
|
"test_ill_case" |
|
] |
|
] |
|
], |
|
"test_rotate90_default": [ |
|
[ |
|
"tests/test_rotate90.py", |
|
[ |
|
"TestRotate90", |
|
"test_rotate90_default" |
|
] |
|
], |
|
[ |
|
"tests/test_rotate90d.py", |
|
[ |
|
"TestRotate90d", |
|
"test_rotate90_default" |
|
] |
|
] |
|
], |
|
"test_range_scale": [ |
|
[ |
|
"tests/test_scale_intensity.py", |
|
[ |
|
"TestScaleIntensity", |
|
"test_range_scale" |
|
] |
|
], |
|
[ |
|
"tests/test_scale_intensityd.py", |
|
[ |
|
"TestScaleIntensityd", |
|
"test_range_scale" |
|
] |
|
] |
|
], |
|
"test_factor_scale": [ |
|
[ |
|
"tests/test_scale_intensity.py", |
|
[ |
|
"TestScaleIntensity", |
|
"test_factor_scale" |
|
] |
|
], |
|
[ |
|
"tests/test_scale_intensityd.py", |
|
[ |
|
"TestScaleIntensityd", |
|
"test_factor_scale" |
|
] |
|
] |
|
], |
|
"test_image_scale_intensity_range": [ |
|
[ |
|
"tests/test_scale_intensity_range.py", |
|
[ |
|
"IntensityScaleIntensityRange", |
|
"test_image_scale_intensity_range" |
|
] |
|
] |
|
], |
|
"test_scaling": [ |
|
[ |
|
"tests/test_scale_intensity_range_percentiles.py", |
|
[ |
|
"TestScaleIntensityRangePercentiles", |
|
"test_scaling" |
|
] |
|
], |
|
[ |
|
"tests/test_scale_intensity_range_percentilesd.py", |
|
[ |
|
"TestScaleIntensityRangePercentilesd", |
|
"test_scaling" |
|
] |
|
] |
|
], |
|
"test_relative_scaling": [ |
|
[ |
|
"tests/test_scale_intensity_range_percentiles.py", |
|
[ |
|
"TestScaleIntensityRangePercentiles", |
|
"test_relative_scaling" |
|
] |
|
], |
|
[ |
|
"tests/test_scale_intensity_range_percentilesd.py", |
|
[ |
|
"TestScaleIntensityRangePercentilesd", |
|
"test_relative_scaling" |
|
] |
|
] |
|
], |
|
"test_invalid_instantiation": [ |
|
[ |
|
"tests/test_scale_intensity_range_percentiles.py", |
|
[ |
|
"TestScaleIntensityRangePercentiles", |
|
"test_invalid_instantiation" |
|
] |
|
], |
|
[ |
|
"tests/test_scale_intensity_range_percentilesd.py", |
|
[ |
|
"TestScaleIntensityRangePercentilesd", |
|
"test_invalid_instantiation" |
|
] |
|
] |
|
], |
|
"test_image_scale_intensity_ranged": [ |
|
[ |
|
"tests/test_scale_intensity_ranged.py", |
|
[ |
|
"IntensityScaleIntensityRanged", |
|
"test_image_scale_intensity_ranged" |
|
] |
|
] |
|
], |
|
"test_convergence": [ |
|
[ |
|
"tests/test_seg_loss_integration.py", |
|
[ |
|
"TestSegLossIntegration", |
|
"test_convergence" |
|
] |
|
] |
|
], |
|
"test_vae_shape": [ |
|
[ |
|
"tests/test_segresnet.py", |
|
[ |
|
"TestResBlockVAE", |
|
"test_vae_shape" |
|
] |
|
] |
|
], |
|
"test_senet_shape": [ |
|
[ |
|
"tests/test_senet.py", |
|
[ |
|
"TestSENET", |
|
"test_senet_shape" |
|
] |
|
], |
|
[ |
|
"tests/test_senet.py", |
|
[ |
|
"TestPretrainedSENET", |
|
"test_senet_shape" |
|
] |
|
] |
|
], |
|
"test_ill_args": [ |
|
[ |
|
"tests/test_simple_aspp.py", |
|
[ |
|
"TestChannelSELayer", |
|
"test_ill_args" |
|
] |
|
] |
|
], |
|
"test_sliding_window_default": [ |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_sliding_window_default" |
|
] |
|
] |
|
], |
|
"test_default_device": [ |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_default_device" |
|
] |
|
] |
|
], |
|
"test_sigma": [ |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_sigma" |
|
] |
|
] |
|
], |
|
"test_cval": [ |
|
[ |
|
"tests/test_sliding_window_inference.py", |
|
[ |
|
"TestSlidingWindowInference", |
|
"test_cval" |
|
] |
|
] |
|
], |
|
"test_spacing": [ |
|
[ |
|
"tests/test_spacing.py", |
|
[ |
|
"TestSpacingCase", |
|
"test_spacing" |
|
] |
|
] |
|
], |
|
"test_ill_pixdim": [ |
|
[ |
|
"tests/test_spacing.py", |
|
[ |
|
"TestSpacingCase", |
|
"test_ill_pixdim" |
|
] |
|
] |
|
], |
|
"test_spacingd_3d": [ |
|
[ |
|
"tests/test_spacingd.py", |
|
[ |
|
"TestSpacingDCase", |
|
"test_spacingd_3d" |
|
] |
|
] |
|
], |
|
"test_spacingd_2d": [ |
|
[ |
|
"tests/test_spacingd.py", |
|
[ |
|
"TestSpacingDCase", |
|
"test_spacingd_2d" |
|
] |
|
] |
|
], |
|
"test_interp_all": [ |
|
[ |
|
"tests/test_spacingd.py", |
|
[ |
|
"TestSpacingDCase", |
|
"test_interp_all" |
|
] |
|
] |
|
], |
|
"test_interp_sep": [ |
|
[ |
|
"tests/test_spacingd.py", |
|
[ |
|
"TestSpacingDCase", |
|
"test_interp_sep" |
|
] |
|
] |
|
], |
|
"test_subpixel_shape": [ |
|
[ |
|
"tests/test_subpixel_upsample.py", |
|
[ |
|
"TestSUBPIXEL", |
|
"test_subpixel_shape" |
|
] |
|
] |
|
], |
|
"test_numpy_input": [ |
|
[ |
|
"tests/test_to_numpy.py", |
|
[ |
|
"TestToNumpy", |
|
"test_numpy_input" |
|
] |
|
], |
|
[ |
|
"tests/test_to_numpyd.py", |
|
[ |
|
"TestToNumpyd", |
|
"test_numpy_input" |
|
] |
|
] |
|
], |
|
"test_tensor_input": [ |
|
[ |
|
"tests/test_to_numpy.py", |
|
[ |
|
"TestToNumpy", |
|
"test_tensor_input" |
|
] |
|
], |
|
[ |
|
"tests/test_to_numpyd.py", |
|
[ |
|
"TestToNumpyd", |
|
"test_tensor_input" |
|
] |
|
] |
|
], |
|
"test_vnet_shape": [ |
|
[ |
|
"tests/test_vnet.py", |
|
[ |
|
"TestVNet", |
|
"test_vnet_shape" |
|
] |
|
] |
|
], |
|
"test_padding_mode": [ |
|
[ |
|
"tests/test_zoom.py", |
|
[ |
|
"TestZoom", |
|
"test_padding_mode" |
|
] |
|
] |
|
], |
|
"test_diagonal": [ |
|
[ |
|
"tests/test_zoom_affine.py", |
|
[ |
|
"TestZoomAffine", |
|
"test_diagonal" |
|
] |
|
] |
|
], |
|
"skip_if_quick": [ |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"skip_if_quick" |
|
] |
|
] |
|
], |
|
"make_nifti_image": [ |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"make_nifti_image" |
|
] |
|
] |
|
], |
|
"expect_failure_if_no_gpu": [ |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"expect_failure_if_no_gpu" |
|
] |
|
] |
|
], |
|
"query_memory": [ |
|
[ |
|
"tests/utils.py", |
|
[ |
|
"query_memory" |
|
] |
|
] |
|
], |
|
"get_root": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_root" |
|
] |
|
] |
|
], |
|
"get": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_config_from_root", |
|
"get" |
|
] |
|
] |
|
], |
|
"get_config_from_root": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_config_from_root" |
|
] |
|
] |
|
], |
|
"do_vcs_install": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"do_vcs_install" |
|
] |
|
] |
|
], |
|
"versions_from_file": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"versions_from_file" |
|
] |
|
] |
|
], |
|
"write_to_version_file": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"write_to_version_file" |
|
] |
|
] |
|
], |
|
"get_version": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_version" |
|
] |
|
] |
|
], |
|
"initialize_options": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"cmd_version", |
|
"initialize_options" |
|
] |
|
] |
|
], |
|
"finalize_options": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"cmd_version", |
|
"finalize_options" |
|
] |
|
] |
|
], |
|
"make_release_tree": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass", |
|
"cmd_sdist", |
|
"make_release_tree" |
|
] |
|
] |
|
], |
|
"get_cmdclass": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"get_cmdclass" |
|
] |
|
] |
|
], |
|
"do_setup": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"do_setup" |
|
] |
|
] |
|
], |
|
"scan_setup_py": [ |
|
[ |
|
"versioneer.py", |
|
[ |
|
"scan_setup_py" |
|
] |
|
] |
|
] |
|
} |