Add files using upload-large-folder tool

dataset_description.json

@@ -0,0 +1,11 @@
+{
+    "Name": "dHCP neonatal dMRI Derivatives Release 2.0",
+    "License": "http://www.developingconnectome.org/open-access-dhcp-data-terms-of-use-version-4-0_2019-05-23/",
+    "Authors": [
+        "dHCP Consortium"
+    ],
+    "HowToAcknowledge": "http://www.developingconnectome.org/how-to-cite/",
+    "PipelineDescription.Name": "dHCP neonatal dMRI pipeline",
+    "PipelineDescription.Version": "v2.0.0",
+    "PipelineDescription.CodeURL": "https://git.fmrib.ox.ac.uk/matteob/dHCP_neo_dMRI_pipeline_release"
+}

from-T2w_to-dwi_mode-image.json

@@ -0,0 +1,9 @@
+{
+   "Description": "Rigid-body transform from structural to diffusion (preproc) space",
+   "Type": "rigid",
+   "Multiplexed": "false",
+   "Invertible": "true",
+   "FromFile": "",
+   "ToFile": "",
+   "CommandLine": ""
+}

from-dwi_to-T2w_mode-image.json

@@ -0,0 +1,9 @@
+{
+   "Description": "Rigid-body transform from diffusion (preproc) to structural space",
+   "Type": "rigid",
+   "Multiplexed": "false",
+   "Invertible": "true",
+   "FromFile": "",
+   "ToFile": "",
+   "CommandLine": ""
+}

from-dwi_to-template40wk_mode-image.json

@@ -0,0 +1,9 @@
+{
+   "Description": "FSL style warp from diffusion (preproc) to 40wk template space",
+   "Type": "displacementfield",
+   "Multiplexed": "false",
+   "Invertible": "true",
+   "FromFile": "",
+   "ToFile": "",
+   "CommandLine": ""
+}

from-template40wk_to-dwi_mode-image.json

@@ -0,0 +1,9 @@
+{
+   "Description": "FSL style warp from 40wk template to diffusion (preproc) space",
+   "Type": "displacementfield",
+   "Multiplexed": "false",
+   "Invertible": "true",
+   "FromFile": "",
+   "ToFile": "",
+   "CommandLine": ""
+}

participants.tsv

@@ -0,0 +1,446 @@
+participant_id	gender	birth_age	birth_weight	singleton
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+CC00672BN13	Female	28.714285714286	0.695	Multiple
+CC00407BN11	Male	35.142857142857	2.41	Multiple
+CC00071XX06	Female	39.857142857142854	3.32	Single
+CC00119XX12	Male	40.428571428571	3.37	Single
+CC00207XX09	Female	39.0	3.07	Single
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+CC00467XX14	Male	40.142857142857	4.025	Single
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+CC00389XX19	Male	28.714285714286	0.825	Single
+CC00818XX18	Female	41.142857142857	3.88	Single
+CC00314XX09	Male	39.285714285714	3.805	Single
+CC00846XX22	Male	40.428571428571	3.44	Single
+CC00569XX17	Male	34.142857142857	2.9	Single
+CC00735XX18	Male	25.571428571429	0.99	Single
+CC00308XX11	Female	37.285714285714285	2.93	Single
+CC00516XX13	Male	40.142857142857	3.3	Single
+CC00412XX08	Male	37.714285714286	2.6	Single
+CC00165XX09	Female	40.428571428571	2.59	Single
+CC00292XX13	Female	39.571428571429	3.08	Single
+CC00217XX11	Male	41.142857142857	4.04	Single
+CC00428XX16	Male	40.571428571429	3.92	Single
+CC00126XX11	Male	38.142857142857	2.85	Single
+CC00260XX05	Female	39.142857142857146	2.75	Single
+CC00671XX12	Male	40.714285714286	3.84	Single
+CC00568XX16	Male	39.714285714286	3.095	Single
+CC00415XX11	Female	38.857142857143	2.5	Single
+CC00564XX12	Male	40.428571428571	3.54	Single
+CC00293BN14	Male	31.285714285714	1.49	Multiple
+CC00667XX16	Male	38.142857142857	2.74	Single
+CC00174XX10	Female	38.714285714285715	3.36	Single
+CC00108XX09	Female	40.0	3.32	Single
+CC00106XX07	Female	40.285714285714285	3.85	Single
+CC00705XX12	Female	39.0	3.045	Single
+CC00570XX10	Female	35.571428571429	2.53	Single
+CC00552XX08	Male	39.0	3.6	Single
+CC00719XX18	Male	40.142857142857	3.11	Single
+CC00592XX16	Male	39.571428571429	3.55	Single
+CC00143BN12	Female	38.142857142857	2.76	Multiple
+CC00247XX17	Female	39.857142857143	2.83	Single
+CC00075XX10	Female	38.57142857142857	3.17	Single
+CC00497XX20	Male	40.857142857143	3.89	Single
+CC00067XX10	Male	40.0	3.125	Single
+CC00152AN04	Male	28.0	1.03	Multiple
+CC00268XX13	Male	39.142857142857	2.8	Single
+CC00403XX07	Male	38.0	2.888	Single
+CC00324XX11	Male	39.285714285714	3.608	Single
+CC00086XX13	Male	40.57142857142857	4.59	Single
+CC00371XX09	Male	40.0	3.81	Single
+CC00453XX08	Female	39.714285714286	2.85	Single
+CC00853XX12	Female	41.285714285714	3.58	Single
+CC00672AN13	Male	28.714285714286	1.31	Multiple
+CC00204XX06	Male	38.571428571429	3.12	Single
+CC00074XX09	Male	39.714285714285715	2.59	Single
+CC00072XX07	Female	39.57142857142857	2.155	Single
+CC00349XX20	Female	41.285714285714	3.53	Single
+CC00181XX09	Female	40.428571428571	3.18	Single
+CC00438XX18	Female	41.142857142857	3.55	Single
+CC00469XX16	Male	41.142857142857	3.42	Single
+CC00413XX09	Female	39.142857142857	2.835	Single
+CC00797XX23	Male	34.857142857143	2.485	Single
+CC00162XX06	Male	40.142857142857146	3.63	Single
+CC00799XX25	Male	42.0	4.33	Single
+CC00855XX14	Female	29.857142857143	1.38	Single
+CC00357XX11	Male	41.0	3.83	Single
+CC00792XX18	Male	33.285714285714	2.235	Single
+CC00255XX08	Male	42.142857142857	3.77	Single
+CC00304XX07	Female	41.0	3.71	Single
+CC00309BN12	Male	27.142857142857	0.88	Multiple
+CC00470XX09	Male	40.714285714286	4.43	Single
+CC00134XX11	Male	40.857142857143	3.34	Single
+CC00150BN02	Male	37.42857142857143	2.53	Multiple
+CC00087AN14	Male	35.714285714285715	2.58	Multiple
+CC00798XX24	Male	39.0	4.1	Single
+CC00117XX10	Male	41.571428571429	3.73	Single
+CC00765XX15	Male	40.428571428571	3.9	Single
+CC00145XX14	Male	38.57142857142857	3.88	Single
+CC00418AN14	Female	36.0	2.3	Multiple
+CC00472XX11	Female	41.285714285714	3.3	Single
+CC00793XX19	Female	40.857142857143	3.39	Single
+CC00810XX10	Male	38.571428571429	2.55	Single
+CC00348XX19	Female	41.428571428571	3.59	Single
+CC00461XX08	Female	41.428571428571	3.39	Single
+CC00434AN14	Female	37.857142857143	2.65	Multiple
+CC00600XX06	Male	31.571428571428573	1.875	Single
+CC00431XX11	Male	41.714285714286	3.97	Single
+CC00577XX17	Male	39.857142857143	3.72	Single
+CC00584XX16	Female	41.857142857143	3.79	Single
+CC00675XX16	Female	40.857142857143	3.77	Single
+CC00620XX10	Female	40.714285714286	3.642	Single
+CC00822XX14	Male	38.857142857143	3.6	Single
+CC00300XX03	Male	40.857142857143	2.755	Single
+CC00607XX13	Male	40.571428571429	3.05	Single
+CC00182XX10	Female	39.0	3.24	Single
+CC00146XX15	Male	40.42857142857143	4.4	Single
+CC00771XX13	Male	35.571428571429	2.2	Single
+CC00423XX11	Male	33.285714285714	2.18	Single
+CC00443XX15	Male	39.714285714286	4.13	Single
+CC00451XX06	Female	40.571428571429	2.925	Single
+CC00380XX10	Male	40.857142857143	3.4	Single
+CC00513XX10	Female	38.428571428571	3.84	Single
+CC00418BN14	Male	36.0	2.11	Multiple
+CC00338AN17	Male	37.142857142857	2.48	Multiple
+CC00286XX15	Male	40.857142857143	4.0	Single
+CC00661XX10	Male	27.571428571428573	0.85	Single
+CC00627XX17	Male	36.857142857143	2.85	Single
+CC00332XX11	Male	39.0	3.6	Single
+CC00102XX03	Female	38.857142857142854	3.38	Single
+CC00830XX14	Female	30.428571428571	1.35	Single
+CC00082XX09	Male	39.42857142857143	3.8	Single
+CC00492AN15	Female	35.142857142857	2.39	Multiple
+CC00498XX21	Female	40.571428571429	3.3	Single
+CC00132XX09	Male	36.571428571429	2.87	Single
+CC00815XX15	Female	37.714285714286	2.85	Single
+CC00218BN12	Male	34.0	1.63	Multiple
+CC00079XX14	Male	41.285714285714285	3.67	Single
+CC00307XX10	Female	41.857142857143	4.61	Single
+CC00446XX18	Female	41.571428571429	2.995	Single
+CC00597XX21	Female	38.714285714286	3.7	Single
+CC00179XX15	Female	40.42857142857143	3.05	Single
+CC00271XX08	Female	35.571428571429	2.47	Single
+CC00628XX18	Female	29.571428571428573	1.11	Single
+CC00200XX02	Male	40.285714285714	3.295	Single
+CC00689XX22	Female	34.428571428571	1.93	Single
+CC00157XX09	Male	39.285714285714285	2.835	Single
+CC00289XX18	Female	39.0	2.94	Single
+CC00385XX15	Male	35.571428571429	2.82	Single
+CC00065XX08	Male	40.42857142857143	3.4	Single
+CC00265XX10	Male	40.142857142857	2.45	Single
+CC00062XX05	Female	41.285714285714285	4.05	Single
+CC00319XX14	Female	41.285714285714	4.19	Single
+CC00520XX09	Male	38.0	2.815	Single
+CC00339XX18	Male	40.714285714286	3.7	Single
+CC00785XX19	Male	34.285714285714285	2.4	Single
+CC00747XX22	Male	29.428571428571	1.48	Single
+CC00238BN16	Male	36.42857142857143	2.13	Multiple
+CC00424XX12	Female	41.0	2.84	Single
+CC00361XX07	Male	32.285714285714	1.61	Single
+CC00267XX12	Male	40.428571428571	3.33	Single
+CC00131XX08	Male	39.0	3.35	Single
+CC00176XX12	Male	41.285714285714285	3.78	Single
+CC00529BN18	Male	27.428571428571427	0.86	Multiple
+CC00103XX04	Male	40.0	2.94	Single
+CC00384XX14	Female	40.571428571429	3.29	Single
+CC00378XX16	Male	38.857142857143	3.185	Single
+CC00770XX12	Female	25.571428571429	0.78	Single
+CC00395XX17	Male	31.285714285714	1.95	Single
+CC00405XX09	Female	40.285714285714285	3.64	Single
+CC00617XX15	Male	31.571428571429	1.64	Single
+CC00191XX11	Male	32.714285714285715	1.96	Single
+CC00588XX20	Male	38.428571428571	2.66	Single
+CC00740XX15	Male	39.0	3.15	Single

sub-CC00087AN14/sub-CC00087AN14_sessions.tsv

@@ -0,0 +1,3 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+31800	36.142857142857146	32.5	1	2	0
+38800	41.0	35.6	2	5	0

sub-CC00087BN14/sub-CC00087BN14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+32100	36.714285714286	31.2	1	2	0

sub-CC00103XX04/sub-CC00103XX04_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+35300	40.142857142857	34.5	1	5	0

sub-CC00107XX08/sub-CC00107XX08_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+36300	41.285714285714	35.7	1	1	0

sub-CC00108XX09/sub-CC00108XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+36800	42.571428571429	35.5	1	1	0

sub-CC00109XX10/sub-CC00109XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_weight	scan_head_circumference	scan_number	radiology_score
+36901	37.428571428571	0.9	33	1	Q

sub-CC00127XX12/sub-CC00127XX12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+43200	41.857142857143	33.0	1	1	0

sub-CC00131XX08/sub-CC00131XX08_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+44200	39.142857142857	34.0	1	1	0

sub-CC00136AN13/sub-CC00136AN13_sessions.tsv

@@ -0,0 +1,3 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+45100	33.285714285714285	27.5	1	1	0
+64201	44.857142857143	34.6	2	1	0

sub-CC00143AN12/sub-CC00143AN12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+47501	38.285714285714	32.5	1	1	0

sub-CC00147XX16/sub-CC00147XX16_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+48500	35.142857142857146	29.3	1	1	0

sub-CC00163XX07/sub-CC00163XX07_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_weight	scan_head_circumference	scan_number	radiology_score
+53701	40.857142857143	3.2	32.5	1	1

sub-CC00165XX09/sub-CC00165XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+54600	41.142857142857	35.0	1	1	0

sub-CC00167XX11/sub-CC00167XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_weight	scan_head_circumference	scan_number	radiology_score
+55600	43.428571428571	4.7	39.3	1	2

sub-CC00174XX10/sub-CC00174XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+57200	41.428571428571	34.7	1	2	0

sub-CC00183XX11/sub-CC00183XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+60300	41.142857142857	35.5	1	1	0

sub-CC00186AN14/sub-CC00186AN14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+60900	45.142857142857	37.2	1	3	0

sub-CC00186BN14/sub-CC00186BN14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+61000	45.142857142857	36.0	1	3	0

sub-CC00191XX11/sub-CC00191XX11_sessions.tsv

@@ -0,0 +1,3 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+65200	34.714285714286	29.6	1	3	0
+79600	40.428571428571	34.5	2	2	0

sub-CC00204XX06/sub-CC00204XX06_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+69900	38.857142857143	35.0	1	1	0

sub-CC00209XX11/sub-CC00209XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+70400	42.857142857143	33.0	1	1	0

sub-CC00231XX09/sub-CC00231XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+77701	37.0	33.0	1	5	0

sub-CC00270XX07/sub-CC00270XX07_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+88600	41.857142857143	36.0	1	3	0

sub-CC00275XX12/sub-CC00275XX12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_weight	scan_head_circumference	scan_number	radiology_score
+93501	44	4.2	37	1	1

sub-CC00293AN14/sub-CC00293AN14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+97401	34.0	29.0	1	2	0

sub-CC00300XX03/sub-CC00300XX03_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+96000	41.0	34.0	1	1	0

sub-CC00316XX11/sub-CC00316XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+101300	44.428571428571	37.4	1	2	0

sub-CC00352XX06/sub-CC00352XX06_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+110700	43.857142857143	37.5	1	2	0

sub-CC00356XX10/sub-CC00356XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+112901	40.428571428571	34.0	1	2	0

sub-CC00371XX09/sub-CC00371XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+134700	42.571428571429	37.1	1	2	0

sub-CC00377XX15/sub-CC00377XX15_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+119800	40.714285714286	33.6	1	2	0

sub-CC00397XX19/sub-CC00397XX19_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+122700	41.857142857143	38.0	1	4	0

sub-CC00400XX04/sub-CC00400XX04_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+123700	40.285714285714	35.0	1	2	0

sub-CC00414XX10/sub-CC00414XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_weight	scan_head_circumference	scan_number	radiology_score
+127300	38	3.7	35	1	5

sub-CC00431XX11/sub-CC00431XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+131500	43.857142857143	37.0	1	2	0

sub-CC00440XX12/sub-CC00440XX12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+132200	41.428571428571	34.0	1	2	0

sub-CC00443XX15/sub-CC00443XX15_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+133900	40.428571428571	35.0	1	2	0

sub-CC00444XX16/sub-CC00444XX16_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_weight	scan_head_circumference	scan_number	radiology_score
+135101	42.571428571429	3.5	36	1	2

sub-CC00450XX05/sub-CC00450XX05_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+136100	38.428571428571	30.5	1	2	0

sub-CC00457XX12/sub-CC00457XX12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+138601	41.428571428571	33.0	1	2	0

sub-CC00467XX14/sub-CC00467XX14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+139000	41.0	36.5	1	2	0