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PR_kwDODunzps5ooQd2
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Expand no-code dataset info with datasets-server info
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E.g., to have info about a dataset's number of examples for more informative TQDM bars.
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Bump huggingface-hub lower version to 0.21.2
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This should fix the version compatibility issue when using `huggingface_hub` < 0.21.2 and latest fsspec (>=2023.12.0).
See my comment: https://github.com/huggingface/datasets/pull/6687#issuecomment-1976493336
>> EDIT: the fix has been released in `huggingface_hub` 0.21.2 - I removed my commits that were using `huggingface_hub@main`
>
>Please note that people using `huggingface_hub` < 0.21.2 and latest `fsspec` will have issues when using `datasets`:
>- https://github.com/huggingface/lighteval/actions/runs/8139147047/job/22241658122?pr=86
>- https://github.com/huggingface/lighteval/pull/84
CC: @clefourrier
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fix CastError pickling
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reported in https://discuss.huggingface.co/t/datasetdict-save-to-disk-with-num-proc-1-seems-to-hang-with-error/75595
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Persist IterableDataset epoch in workers
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Use shared memory for the IterableDataset epoch.
This way calling `ds.set_epoch()` in the main process will update the epoch in the DataLoader workers as well.
This is useful especially because the epoch is used to compute the `effective_seed` used for shuffling.
I used torch's shared memory in case users want to send dataset copies without shared memory using pickle. I also find it easier to use than using `multiprocessing.shared_memory` than requires unlinking only in the main process, or `mp.Value` that is not picklable.
close https://github.com/huggingface/datasets/issues/6673
cc @rwightman
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set dev version
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PR_kwDODunzps5obdbY
| 6,705 |
Fix data_files when passing data_dir
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This code should not return empty data files
```python
from datasets import load_dataset_builder
revision = "3d406e70bc21c3ca92a9a229b4c6fc3ed88279fd"
b = load_dataset_builder("bigcode/the-stack-v2-dedup", data_dir="data/Dockerfile", revision=revision)
print(b.config.data_files)
```
Previously it would return no data files because it would apply the YAML `data_files: data/**/train-*` pattern to this directory
cc @anton-l
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PR_kwDODunzps5obZyj
| 6,704 |
Improve default patterns resolution
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Separate the default patterns that match directories from the ones matching files and ensure directories are checked first (reverts the change from https://github.com/huggingface/datasets/pull/6244, which merged these patterns). Also, ensure that the glob patterns do not overlap to avoid duplicates in the result.
Additionally, replace `get_fs_token_paths` with `url_to_fs` to avoid [unnecessary glob calls](https://github.com/fsspec/filesystem_spec/blob/14dce8ca78f7aa509a20edb263bff83a7760c24d/fsspec/core.py#L655-L656).
fix https://github.com/huggingface/datasets/issues/6259
fix https://github.com/huggingface/datasets/issues/6272
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I_kwDODunzps6A8JWe
| 6,703 |
Unable to load dataset that was saved with `save_to_disk`
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NONE
| null | null | null |
### Describe the bug
I get the following error message: You are trying to load a dataset that was saved using `save_to_disk`. Please use `load_from_disk` instead.
### Steps to reproduce the bug
1. Save a dataset with `save_to_disk`
2. Try to load it with `load_datasets`
### Expected behavior
I am able to load the dataset again with `load_datasets` which most packages uses over `load_from_disk`. I want to have a workaround that allows me to create the same indexing that `push_to_hub` creates for you before using `save_to_disk` - how can that be achieved?
### Environment info
datasets 2.17.1, python 3.10
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I_kwDODunzps6A3JA0
| 6,702 |
Push samples to dataset on hub without having the dataset locally
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[] | null | 2 | 2024-02-29T19:17:12 | 2024-03-08T21:08:38 | 2024-03-08T21:08:38 |
NONE
| null | null | null |
### Feature request
Say I have the following code:
```
from datasets import Dataset
import pandas as pd
new_data = {
"column_1": ["value1", "value2"],
"column_2": ["value3", "value4"],
}
df_new = pd.DataFrame(new_data)
dataset_new = Dataset.from_pandas(df_new)
# add these samples to a remote dataset
```
It would be great to have a way to push dataset_new to a remote dataset that respects the same schema. This way one would not have to do the following:
```
from datasets import load_dataset
dataset = load_dataset('username/dataset_name', use_auth_token='your_hf_token_here')
updated_dataset = dataset['train'].concatenate(dataset_new)
updated_dataset.push_to_hub('username/dataset_name', use_auth_token='your_hf_token_here')
```
### Motivation
No need to download the dataset.
### Your contribution
Maybe this feature already exists, didnt see it though. I do not have the expertise to do this.
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PR_kwDODunzps5oTfO_
| 6,701 |
Base parquet batch_size on parquet row group size
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MEMBER
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This allows to stream datasets like [Major-TOM/Core-S2L2A](https://huggingface.co/datasets/Major-TOM/Core-S2L2A) which have row groups with few rows (one row is ~10MB). Previously the cold start would take a lot of time and OOM because it would download many row groups before yielding the first example.
I tried on OpenOrca and imagenet-hard and it does't affect overall throughput.
Even if the overall throughput doesn't change for datasets like imagenet-hard with big rows, note that it does create shorter and more frequent pauses to download the next row group. Though I find it fine because previously the pauses were less frequent but very long (downloading multiple row groups at a time)
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I_kwDODunzps6ArcH-
| 6,700 |
remove_columns is not in-place but the doc shows it is in-place
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[] | null | 3 | 2024-02-28T12:36:22 | 2024-04-02T17:15:28 | 2024-04-02T17:15:28 |
NONE
| null | null | null |
### Describe the bug
The doc of `datasets` v2.17.0/v2.17.1 shows that `remove_columns` is in-place. [link](https://huggingface.co/docs/datasets/v2.17.1/en/package_reference/main_classes#datasets.DatasetDict.remove_columns)
In the text classification example of transformers v4.38.1, the columns are not removed.
https://github.com/huggingface/transformers/blob/a0857740c0e6127485c11476650314df3accc2b6/examples/pytorch/text-classification/run_classification.py#L421
### Steps to reproduce the bug
https://github.com/huggingface/transformers/blob/a0857740c0e6127485c11476650314df3accc2b6/examples/pytorch/text-classification/run_classification.py#L421
### Expected behavior
Actually remove the columns.
### Environment info
1. datasets v2.17.0
2. transformers v4.38.1
|
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| 2,157,752,392 |
PR_kwDODunzps5oG6Xt
| 6,698 |
Faster `xlistdir`
|
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COLLABORATOR
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Pass `detail=False` to the `fsspec` `listdir` to avoid unnecessarily fetching expensive metadata about the paths.
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I_kwDODunzps6Alh_w
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Unable to Load Dataset in Kaggle
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NONE
| null | null | null |
### Describe the bug
Having installed the latest versions of transformers==4.38.1 and datasets==2.17.1 Unable to load the dataset in a kaggle notebook.
Get this Error:
```
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Cell In[8], line 3
1 from datasets import load_dataset
----> 3 dataset = load_dataset("llm-blender/mix-instruct")
File /opt/conda/lib/python3.10/site-packages/datasets/load.py:1664, in load_dataset(path, name, data_dir, data_files, split, cache_dir, features, download_config, download_mode, ignore_verifications, keep_in_memory, save_infos, revision, use_auth_token, task, streaming, **config_kwargs)
1661 ignore_verifications = ignore_verifications or save_infos
1663 # Create a dataset builder
-> 1664 builder_instance = load_dataset_builder(
1665 path=path,
1666 name=name,
1667 data_dir=data_dir,
1668 data_files=data_files,
1669 cache_dir=cache_dir,
1670 features=features,
1671 download_config=download_config,
1672 download_mode=download_mode,
1673 revision=revision,
1674 use_auth_token=use_auth_token,
1675 **config_kwargs,
1676 )
1678 # Return iterable dataset in case of streaming
1679 if streaming:
File /opt/conda/lib/python3.10/site-packages/datasets/load.py:1490, in load_dataset_builder(path, name, data_dir, data_files, cache_dir, features, download_config, download_mode, revision, use_auth_token, **config_kwargs)
1488 download_config = download_config.copy() if download_config else DownloadConfig()
1489 download_config.use_auth_token = use_auth_token
-> 1490 dataset_module = dataset_module_factory(
1491 path,
1492 revision=revision,
1493 download_config=download_config,
1494 download_mode=download_mode,
1495 data_dir=data_dir,
1496 data_files=data_files,
1497 )
1499 # Get dataset builder class from the processing script
1500 builder_cls = import_main_class(dataset_module.module_path)
File /opt/conda/lib/python3.10/site-packages/datasets/load.py:1242, in dataset_module_factory(path, revision, download_config, download_mode, force_local_path, dynamic_modules_path, data_dir, data_files, **download_kwargs)
1237 if isinstance(e1, FileNotFoundError):
1238 raise FileNotFoundError(
1239 f"Couldn't find a dataset script at {relative_to_absolute_path(combined_path)} or any data file in the same directory. "
1240 f"Couldn't find '{path}' on the Hugging Face Hub either: {type(e1).__name__}: {e1}"
1241 ) from None
-> 1242 raise e1 from None
1243 else:
1244 raise FileNotFoundError(
1245 f"Couldn't find a dataset script at {relative_to_absolute_path(combined_path)} or any data file in the same directory."
1246 )
File /opt/conda/lib/python3.10/site-packages/datasets/load.py:1230, in dataset_module_factory(path, revision, download_config, download_mode, force_local_path, dynamic_modules_path, data_dir, data_files, **download_kwargs)
1215 return HubDatasetModuleFactoryWithScript(
1216 path,
1217 revision=revision,
(...)
1220 dynamic_modules_path=dynamic_modules_path,
1221 ).get_module()
1222 else:
1223 return HubDatasetModuleFactoryWithoutScript(
1224 path,
1225 revision=revision,
1226 data_dir=data_dir,
1227 data_files=data_files,
1228 download_config=download_config,
1229 download_mode=download_mode,
-> 1230 ).get_module()
1231 except Exception as e1: # noqa: all the attempts failed, before raising the error we should check if the module is already cached.
1232 try:
File /opt/conda/lib/python3.10/site-packages/datasets/load.py:846, in HubDatasetModuleFactoryWithoutScript.get_module(self)
836 token = self.download_config.use_auth_token
837 hfh_dataset_info = HfApi(config.HF_ENDPOINT).dataset_info(
838 self.name,
839 revision=self.revision,
840 token=token,
841 timeout=100.0,
842 )
843 patterns = (
844 sanitize_patterns(self.data_files)
845 if self.data_files is not None
--> 846 else get_patterns_in_dataset_repository(hfh_dataset_info)
847 )
848 data_files = DataFilesDict.from_hf_repo(
849 patterns,
850 dataset_info=hfh_dataset_info,
851 allowed_extensions=ALL_ALLOWED_EXTENSIONS,
852 )
853 infered_module_names = {
854 key: infer_module_for_data_files(data_files_list, use_auth_token=self.download_config.use_auth_token)
855 for key, data_files_list in data_files.items()
856 }
File /opt/conda/lib/python3.10/site-packages/datasets/data_files.py:471, in get_patterns_in_dataset_repository(dataset_info)
469 resolver = partial(_resolve_single_pattern_in_dataset_repository, dataset_info)
470 try:
--> 471 return _get_data_files_patterns(resolver)
472 except FileNotFoundError:
473 raise FileNotFoundError(
474 f"The dataset repository at '{dataset_info.id}' doesn't contain any data file."
475 ) from None
File /opt/conda/lib/python3.10/site-packages/datasets/data_files.py:99, in _get_data_files_patterns(pattern_resolver)
97 try:
98 for pattern in patterns:
---> 99 data_files = pattern_resolver(pattern)
100 if len(data_files) > 0:
101 non_empty_splits.append(split)
File /opt/conda/lib/python3.10/site-packages/datasets/data_files.py:303, in _resolve_single_pattern_in_dataset_repository(dataset_info, pattern, allowed_extensions)
301 data_files_ignore = FILES_TO_IGNORE
302 fs = HfFileSystem(repo_info=dataset_info)
--> 303 glob_iter = [PurePath(filepath) for filepath in fs.glob(PurePath(pattern).as_posix()) if fs.isfile(filepath)]
304 matched_paths = [
305 filepath
306 for filepath in glob_iter
307 if filepath.name not in data_files_ignore and not filepath.name.startswith(".")
308 ]
309 if allowed_extensions is not None:
File /opt/conda/lib/python3.10/site-packages/fsspec/spec.py:606, in AbstractFileSystem.glob(self, path, maxdepth, **kwargs)
602 depth = None
604 allpaths = self.find(root, maxdepth=depth, withdirs=True, detail=True, **kwargs)
--> 606 pattern = glob_translate(path + ("/" if ends_with_sep else ""))
607 pattern = re.compile(pattern)
609 out = {
610 p: info
611 for p, info in sorted(allpaths.items())
(...)
618 )
619 }
File /opt/conda/lib/python3.10/site-packages/fsspec/utils.py:734, in glob_translate(pat)
732 continue
733 elif "**" in part:
--> 734 raise ValueError(
735 "Invalid pattern: '**' can only be an entire path component"
736 )
737 if part:
738 results.extend(_translate(part, f"{not_sep}*", not_sep))
ValueError: Invalid pattern: '**' can only be an entire path component
```
```
After loading this dataset
### Steps to reproduce the bug
```
from datasets import load_dataset
dataset = load_dataset("llm-blender/mix-instruct")
```
### Expected behavior
The dataset should load with desired split.
### Environment info
- `datasets` version: 2.17.1
- Platform: Linux-5.15.133+-x86_64-with-glibc2.31
- Python version: 3.10.13
- `huggingface_hub` version: 0.20.3
- PyArrow version: 15.0.0
- Pandas version: 2.2.0
- `fsspec` version: 2023.10.0
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PR_kwDODunzps5n6ipH
| 6,696 |
Make JSON builder support an array of strings
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Support JSON file with an array of strings.
Fix #6695.
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Support loading a dataset from a JSON file with an array of strings.
See: https://huggingface.co/datasets/CausalLM/Refined-Anime-Text/discussions/1
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Update the print message for chunked_dataset in process.mdx
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Update documentation to align with `Dataset.__repr__` change after #423
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Enhancement: Enable loading TSV files in load_dataset()
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Fix #6691
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I_kwDODunzps6ARvWZ
| 6,691 |
load_dataset() does not support tsv
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NONE
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### Feature request
the load_dataset() for local functions support file types like csv, json etc but not of type tsv (tab separated values).
### Motivation
cant easily load files of type tsv, have to convert them to another type like csv then load
### Your contribution
Can try by raising a PR with a little help, currently went through the code but didn't fully understand
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I_kwDODunzps6AMprB
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Add function to convert a script-dataset to Parquet
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MEMBER
| null | null | null |
Add function to convert a script-dataset to Parquet and push it to the Hub, analogously to the Space: "Convert a Hugging Face dataset to Parquet"
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I_kwDODunzps6AIAFb
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.load_dataset() method defaults to zstandard
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NONE
| null | null | null |
### Describe the bug
Regardless of what method I use, datasets defaults to zstandard for unpacking my datasets.
This is poor behavior, because not only is zstandard not a dependency in the huggingface package (and therefore, your dataset loading will be interrupted while it asks you to install the package), but it happens on datasets that are uploaded in json format too, meaning the dataset loader will attempt to convert the data to a zstandard compatible format, and THEN try to unpackage it.
My 4tb drive runs out of room when using zstandard on slimpajama. It loads fine on 1.5tb when using json, however I lack the understanding of the "magic numbers" system used to select the unpackaging algorithm, so I can't push a change myself.
Commenting out this line, in "/datasets/utils/extract.py" fixes the issue, and causes SlimPajama to properly extract using rational amounts of storage, however it completely disables zstandard, which is probably undesirable behavior. Someone with an understanding of the "magic numbers" system should probably take a pass over this issue.
```
class Extractor:
# Put zip file to the last, b/c it is possible wrongly detected as zip (I guess it means: as tar or gzip)
extractors: Dict[str, Type[BaseExtractor]] = {
"tar": TarExtractor,
"gzip": GzipExtractor,
"zip": ZipExtractor,
"xz": XzExtractor,
#"zstd": ZstdExtractor, # This line needs to go, in order for datasets to work w/o non-dependent packages
"rar": RarExtractor,
"bz2": Bzip2Extractor,
"7z": SevenZipExtractor, # <Added version="2.4.0"/>
"lz4": Lz4Extractor, # <Added version="2.4.0"/>
}
```
### Steps to reproduce the bug
'''
from datasaets import load_dataset
load_dataset(path="/cerebras/SlimPajama-627B")
'''
This alone should trigger the error on any system that does not have zstandard pip installed.
### Expected behavior
This repository (which is encoded in json format, not zstandard) should check whether zstandard is installed before defaulting to it. Additionally, using zstandard should not use more than 3x the required space that other extraction mechanisms use.
### Environment info
- `datasets` version: 2.17.1
- Platform: Linux-6.5.0-18-generic-x86_64-with-glibc2.35
- Python version: 3.12.0
- `huggingface_hub` version: 0.20.3
- PyArrow version: 15.0.0
- Pandas version: 2.2.0
- `fsspec` version: 2023.10.0
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- adds support for the `fs.glob` changes introduced in `fsspec==2023.12.0` and unpins the current upper bound
Should close #6644
Should close #6645
The `test_data_files` glob/pattern tests pass for me in:
- `fsspec==2023.10.0` (the pinned max version in datasets `main`)
- `fsspec==2023.12.0` (#6644)
- `fsspec==2024.2.0` (#6645)
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PR_kwDODunzps5ndZQa
| 6,685 |
Updated Quickstart Notebook link
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Fixed Quickstart Notebook Link in the [Overview notebook](https://github.com/huggingface/datasets/blob/main/notebooks/Overview.ipynb)
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PR_kwDODunzps5nYUIf
| 6,684 |
Improve error message for gated datasets on load
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Internal Slack discussion: https://huggingface.slack.com/archives/C02V51Q3800/p1708424971135029
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PR_kwDODunzps5nTxGu
| 6,683 |
Fix imagefolder dataset url
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PR_kwDODunzps5nRME6
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Update GitHub Actions to Node 20
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Update GitHub Actions to Node 20.
Fix #6679.
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Update release instructions
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Update release instructions.
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| null | null | true | 8 days, 21:14:14 |
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| 2,141,979,527 |
PR_kwDODunzps5nRHcz
| 6,680 |
Set dev version
|
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I_kwDODunzps5_q5-9
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Node.js 16 GitHub Actions are deprecated
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MEMBER
| null | null | null |
`Node.js` 16 GitHub Actions are deprecated. See: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/
We should update them to Node 20.
See warnings in our CI, e.g.: https://github.com/huggingface/datasets/actions/runs/7957295009?pr=6678
> Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v4. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PR_kwDODunzps5nQ2ZO
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Release: 2.17.1
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| 2,141,244,167 |
PR_kwDODunzps5nOmo_
| 6,677 |
Pass through information about location of cache directory.
|
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CONTRIBUTOR
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If cache directory is set, information is not passed through.
Pass download config in as an arg too.
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I_kwDODunzps5_iFI9
| 6,675 |
Allow image model (color conversion) to be specified as part of datasets Image() decode
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[] | null | 1 | 2024-02-16T23:43:20 | 2024-03-18T15:41:34 | 2024-03-18T15:41:34 |
NONE
| null | null | null |
### Feature request
Typical torchvision / torch Datasets in image applications apply color conversion in the Dataset portion of the code as part of image decode, separately from the image transform stack. This is true for PIL.Image where convert is usually called in dataset, for native torchvision https://pytorch.org/vision/main/generated/torchvision.io.decode_jpeg.html, and similarly in tensorflow.data pipelines decode_jpeg or https://www.tensorflow.org/api_docs/python/tf/io/decode_and_crop_jpeg have a channels arg that allows controlling the image mode in the decode step.
datasets currently requires this pattern (from [examples](https://huggingface.co/docs/datasets/main/en/image_process)):
```
from torchvision.transforms import Compose, ColorJitter, ToTensor
jitter = Compose(
[
ColorJitter(brightness=0.25, contrast=0.25, saturation=0.25, hue=0.7),
ToTensor(),
]
)
def transforms(examples):
examples["pixel_values"] = [jitter(image.convert("RGB")) for image in examples["image"]]
return examples
```
### Motivation
It would be nice to be able to handle `image.convert("RGB")` (or other modes) in the decode step, before applying torchvision transforms, this would reduce differences in code when handling pipelines that can handle torchvision, webdatset, or hf datasets with fewer code differences and without needing to handle image mode argument passing in two different stages of the pipelines...
### Your contribution
Can do a PR with guidance on how mode should be passed / set on the dataset.
|
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I_kwDODunzps5_h6M4
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Depprcated Overview.ipynb Link to new Quickstart Notebook invalid
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[] | null | 1 | 2024-02-16T22:51:35 | 2024-02-25T18:48:09 | 2024-02-25T18:48:09 |
CONTRIBUTOR
| null | null | null |
### Describe the bug
For the dreprecated notebook found [here](https://github.com/huggingface/datasets/blob/main/notebooks/Overview.ipynb). The link to the new notebook is broken.
### Steps to reproduce the bug
Click the [Quickstart notebook](https://github.com/huggingface/notebooks/blob/main/datasets_doc/quickstart.ipynb) link in the notebook.
### Expected behavior
I believe is it suposed to link [here](https://github.com/huggingface/notebooks/blob/main/datasets_doc/en/quickstart.ipynb). That is mentioned in the readme.
### Environment info
Colab
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I_kwDODunzps5_hocL
| 6,673 |
IterableDataset `set_epoch` is ignored when DataLoader `persistent_workers=True`
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[] | null | 0 | 2024-02-16T21:38:12 | 2024-07-01T17:45:31 | 2024-07-01T17:45:31 |
NONE
| null | null | null |
### Describe the bug
When persistent workers are enabled, the epoch that's set via the IterableDataset instance held by the training process is ignored by the workers as they are disconnected across processes.
PyTorch samplers for non-iterable datasets have a mechanism to sync this, datasets.IterableDataset does not.
In my own use of IterableDatasets I usually track the epoch count which crosses process boundaries in a multiprocessing.Value
### Steps to reproduce the bug
Use a streaming dataset (Iterable) w/ the recommended pattern below and `persistent_workers=True` in the torch DataLoader.
```
for epoch in range(epochs):
shuffled_dataset.set_epoch(epoch)
for example in shuffled_dataset:
...
```
### Expected behavior
When the canonical bit of code above is used with `num_workers > 0` and `persistent_workers=True`, the epoch set via `set_epoch()` is propagated to the IterableDataset instances in the worker processes
### Environment info
N/A
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PR_kwDODunzps5nGAlw
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Remove deprecated verbose parameter from CSV builder
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[] | null | 3 | 2024-02-16T14:26:21 | 2024-02-19T09:26:34 | 2024-02-19T09:20:22 |
MEMBER
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Remove deprecated `verbose` parameter from CSV builder.
Note that the `verbose` parameter is deprecated since pandas 2.2.0. See:
- https://github.com/pandas-dev/pandas/pull/56556
- https://github.com/pandas-dev/pandas/pull/57450
Fix #6671.
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CSV builder raises deprecation warning on verbose parameter
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MEMBER
| null | null | null |
CSV builder raises a deprecation warning on `verbose` parameter:
```
FutureWarning: The 'verbose' keyword in pd.read_csv is deprecated and will be removed in a future version.
```
See:
- https://github.com/pandas-dev/pandas/pull/56556
- https://github.com/pandas-dev/pandas/pull/57450
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I_kwDODunzps5_dPte
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ValueError
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NONE
| null | null | null |
### Describe the bug
ValueError Traceback (most recent call last)
[<ipython-input-11-9b99bc80ec23>](https://localhost:8080/#) in <cell line: 11>()
9 import numpy as np
10 import matplotlib.pyplot as plt
---> 11 from datasets import DatasetDict, Dataset
12 from transformers import AutoTokenizer, AutoModelForSequenceClassification
13 from transformers import Trainer, TrainingArguments
5 frames
[/usr/local/lib/python3.10/dist-packages/datasets/__init__.py](https://localhost:8080/#) in <module>
16 __version__ = "2.17.0"
17
---> 18 from .arrow_dataset import Dataset
19 from .arrow_reader import ReadInstruction
20 from .builder import ArrowBasedBuilder, BeamBasedBuilder, BuilderConfig, DatasetBuilder, GeneratorBasedBuilder
[/usr/local/lib/python3.10/dist-packages/datasets/arrow_dataset.py](https://localhost:8080/#) in <module>
65
66 from . import config
---> 67 from .arrow_reader import ArrowReader
68 from .arrow_writer import ArrowWriter, OptimizedTypedSequence
69 from .data_files import sanitize_patterns
[/usr/local/lib/python3.10/dist-packages/datasets/arrow_reader.py](https://localhost:8080/#) in <module>
27
28 import pyarrow as pa
---> 29 import pyarrow.parquet as pq
30 from tqdm.contrib.concurrent import thread_map
31
[/usr/local/lib/python3.10/dist-packages/pyarrow/parquet/__init__.py](https://localhost:8080/#) in <module>
18 # flake8: noqa
19
---> 20 from .core import *
[/usr/local/lib/python3.10/dist-packages/pyarrow/parquet/core.py](https://localhost:8080/#) in <module>
34 import pyarrow as pa
35 import pyarrow.lib as lib
---> 36 import pyarrow._parquet as _parquet
37
38 from pyarrow._parquet import (ParquetReader, Statistics, # noqa
/usr/local/lib/python3.10/dist-packages/pyarrow/_parquet.pyx in init pyarrow._parquet()
ValueError: pyarrow.lib.IpcWriteOptions size changed, may indicate binary incompatibility. Expected 88 from C header, got 72 from PyObject
### Steps to reproduce the bug
ValueError: pyarrow.lib.IpcWriteOptions size changed, may indicate binary incompatibility. Expected 88 from C header, got 72 from PyObject
### Expected behavior
Resolve the binary incompatibility
### Environment info
Google Colab Note book
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attribute error when writing trainer.train()
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[] | null | 2 | 2024-02-16T10:40:49 | 2024-03-01T10:58:00 | 2024-02-29T17:25:17 |
NONE
| null | null | null |
### Describe the bug
AttributeError Traceback (most recent call last)
Cell In[39], line 2
1 # Start the training process
----> 2 trainer.train()
File /opt/conda/lib/python3.10/site-packages/transformers/trainer.py:1539, in Trainer.train(self, resume_from_checkpoint, trial, ignore_keys_for_eval, **kwargs)
1537 hf_hub_utils.enable_progress_bars()
1538 else:
-> 1539 return inner_training_loop(
1540 args=args,
1541 resume_from_checkpoint=resume_from_checkpoint,
1542 trial=trial,
1543 ignore_keys_for_eval=ignore_keys_for_eval,
1544 )
File /opt/conda/lib/python3.10/site-packages/transformers/trainer.py:1836, in Trainer._inner_training_loop(self, batch_size, args, resume_from_checkpoint, trial, ignore_keys_for_eval)
1833 rng_to_sync = True
1835 step = -1
-> 1836 for step, inputs in enumerate(epoch_iterator):
1837 total_batched_samples += 1
1839 if self.args.include_num_input_tokens_seen:
File /opt/conda/lib/python3.10/site-packages/accelerate/data_loader.py:451, in DataLoaderShard.__iter__(self)
449 # We iterate one batch ahead to check when we are at the end
450 try:
--> 451 current_batch = next(dataloader_iter)
452 except StopIteration:
453 yield
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/dataloader.py:630, in _BaseDataLoaderIter.__next__(self)
627 if self._sampler_iter is None:
628 # TODO([https://github.com/pytorch/pytorch/issues/76750)](https://github.com/pytorch/pytorch/issues/76750)%3C/span%3E)
629 self._reset() # type: ignore[call-arg]
--> 630 data = self._next_data()
631 self._num_yielded += 1
632 if self._dataset_kind == _DatasetKind.Iterable and \
633 self._IterableDataset_len_called is not None and \
634 self._num_yielded > self._IterableDataset_len_called:
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/dataloader.py:674, in _SingleProcessDataLoaderIter._next_data(self)
672 def _next_data(self):
673 index = self._next_index() # may raise StopIteration
--> 674 data = self._dataset_fetcher.fetch(index) # may raise StopIteration
675 if self._pin_memory:
676 data = _utils.pin_memory.pin_memory(data, self._pin_memory_device)
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/_utils/fetch.py:51, in _MapDatasetFetcher.fetch(self, possibly_batched_index)
49 data = self.dataset.__getitems__(possibly_batched_index)
50 else:
---> 51 data = [self.dataset[idx] for idx in possibly_batched_index]
52 else:
53 data = self.dataset[possibly_batched_index]
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/_utils/fetch.py:51, in <listcomp>(.0)
49 data = self.dataset.__getitems__(possibly_batched_index)
50 else:
---> 51 data = [self.dataset[idx] for idx in possibly_batched_index]
52 else:
53 data = self.dataset[possibly_batched_index]
File /opt/conda/lib/python3.10/site-packages/datasets/arrow_dataset.py:1764, in Dataset.__getitem__(self, key)
1762 def __getitem__(self, key): # noqa: F811
1763 """Can be used to index columns (by string names) or rows (by integer index or iterable of indices or bools)."""
-> 1764 return self._getitem(
1765 key,
1766 )
File /opt/conda/lib/python3.10/site-packages/datasets/arrow_dataset.py:1749, in Dataset._getitem(self, key, decoded, **kwargs)
1747 formatter = get_formatter(format_type, features=self.features, decoded=decoded, **format_kwargs)
1748 pa_subtable = query_table(self._data, key, indices=self._indices if self._indices is not None else None)
-> 1749 formatted_output = format_table(
1750 pa_subtable, key, formatter=formatter, format_columns=format_columns, output_all_columns=output_all_columns
1751 )
1752 return formatted_output
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:540, in format_table(table, key, formatter, format_columns, output_all_columns)
538 else:
539 pa_table_to_format = pa_table.drop(col for col in pa_table.column_names if col not in format_columns)
--> 540 formatted_output = formatter(pa_table_to_format, query_type=query_type)
541 if output_all_columns:
542 if isinstance(formatted_output, MutableMapping):
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:281, in Formatter.__call__(self, pa_table, query_type)
279 def __call__(self, pa_table: pa.Table, query_type: str) -> Union[RowFormat, ColumnFormat, BatchFormat]:
280 if query_type == "row":
--> 281 return self.format_row(pa_table)
282 elif query_type == "column":
283 return self.format_column(pa_table)
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/torch_formatter.py:57, in TorchFormatter.format_row(self, pa_table)
56 def format_row(self, pa_table: pa.Table) -> dict:
---> 57 row = self.numpy_arrow_extractor().extract_row(pa_table)
58 return self.recursive_tensorize(row)
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:154, in NumpyArrowExtractor.extract_row(self, pa_table)
153 def extract_row(self, pa_table: pa.Table) -> dict:
--> 154 return _unnest(self.extract_batch(pa_table))
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:160, in NumpyArrowExtractor.extract_batch(self, pa_table)
159 def extract_batch(self, pa_table: pa.Table) -> dict:
--> 160 return {col: self._arrow_array_to_numpy(pa_table[col]) for col in pa_table.column_names}
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:160, in <dictcomp>(.0)
159 def extract_batch(self, pa_table: pa.Table) -> dict:
--> 160 return {col: self._arrow_array_to_numpy(pa_table[col]) for col in pa_table.column_names}
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:196, in NumpyArrowExtractor._arrow_array_to_numpy(self, pa_array)
194 array: List = pa_array.to_numpy(zero_copy_only=zero_copy_only).tolist()
195 if len(array) > 0:
--> 196 if any(
197 (isinstance(x, np.ndarray) and (x.dtype == np.object or x.shape != array[0].shape))
198 or (isinstance(x, float) and np.isnan(x))
199 for x in array
200 ):
201 return np.array(array, copy=False, **{**self.np_array_kwargs, "dtype": np.object})
202 return np.array(array, copy=False, **self.np_array_kwargs)
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:197, in <genexpr>(.0)
194 array: List = pa_array.to_numpy(zero_copy_only=zero_copy_only).tolist()
195 if len(array) > 0:
196 if any(
--> 197 (isinstance(x, np.ndarray) and (x.dtype == np.object or x.shape != array[0].shape))
198 or (isinstance(x, float) and np.isnan(x))
199 for x in array
200 ):
201 return np.array(array, copy=False, **{**self.np_array_kwargs, "dtype": np.object})
202 return np.array(array, copy=False, **self.np_array_kwargs)
File /opt/conda/lib/python3.10/site-packages/numpy/__init__.py:324, in __getattr__(attr)
319 warnings.warn(
320 f"In the future `np.{attr}` will be defined as the "
321 "corresponding NumPy scalar.", FutureWarning, stacklevel=2)
323 if attr in __former_attrs__:
--> 324 raise AttributeError(__former_attrs__[attr])
326 if attr == 'testing':
327 import numpy.testing as testing
AttributeError: module 'numpy' has no attribute 'object'.
`np.object` was a deprecated alias for the builtin `object`. To avoid this error in existing code, use `object` by itself. Doing this will not modify any behavior and is safe.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecationsAttributeError Traceback (most recent call last)
Cell In[39], line 2
1 # Start the training process
----> 2 trainer.train()
File /opt/conda/lib/python3.10/site-packages/transformers/trainer.py:1539, in Trainer.train(self, resume_from_checkpoint, trial, ignore_keys_for_eval, **kwargs)
1537 hf_hub_utils.enable_progress_bars()
1538 else:
-> 1539 return inner_training_loop(
1540 args=args,
1541 resume_from_checkpoint=resume_from_checkpoint,
1542 trial=trial,
1543 ignore_keys_for_eval=ignore_keys_for_eval,
1544 )
File /opt/conda/lib/python3.10/site-packages/transformers/trainer.py:1836, in Trainer._inner_training_loop(self, batch_size, args, resume_from_checkpoint, trial, ignore_keys_for_eval)
1833 rng_to_sync = True
1835 step = -1
-> 1836 for step, inputs in enumerate(epoch_iterator):
1837 total_batched_samples += 1
1839 if self.args.include_num_input_tokens_seen:
File /opt/conda/lib/python3.10/site-packages/accelerate/data_loader.py:451, in DataLoaderShard.__iter__(self)
449 # We iterate one batch ahead to check when we are at the end
450 try:
--> 451 current_batch = next(dataloader_iter)
452 except StopIteration:
453 yield
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/dataloader.py:630, in _BaseDataLoaderIter.__next__(self)
627 if self._sampler_iter is None:
628 # TODO([https://github.com/pytorch/pytorch/issues/76750)](https://github.com/pytorch/pytorch/issues/76750)%3C/span%3E)
629 self._reset() # type: ignore[call-arg]
--> 630 data = self._next_data()
631 self._num_yielded += 1
632 if self._dataset_kind == _DatasetKind.Iterable and \
633 self._IterableDataset_len_called is not None and \
634 self._num_yielded > self._IterableDataset_len_called:
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/dataloader.py:674, in _SingleProcessDataLoaderIter._next_data(self)
672 def _next_data(self):
673 index = self._next_index() # may raise StopIteration
--> 674 data = self._dataset_fetcher.fetch(index) # may raise StopIteration
675 if self._pin_memory:
676 data = _utils.pin_memory.pin_memory(data, self._pin_memory_device)
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/_utils/fetch.py:51, in _MapDatasetFetcher.fetch(self, possibly_batched_index)
49 data = self.dataset.__getitems__(possibly_batched_index)
50 else:
---> 51 data = [self.dataset[idx] for idx in possibly_batched_index]
52 else:
53 data = self.dataset[possibly_batched_index]
File /opt/conda/lib/python3.10/site-packages/torch/utils/data/_utils/fetch.py:51, in <listcomp>(.0)
49 data = self.dataset.__getitems__(possibly_batched_index)
50 else:
---> 51 data = [self.dataset[idx] for idx in possibly_batched_index]
52 else:
53 data = self.dataset[possibly_batched_index]
File /opt/conda/lib/python3.10/site-packages/datasets/arrow_dataset.py:1764, in Dataset.__getitem__(self, key)
1762 def __getitem__(self, key): # noqa: F811
1763 """Can be used to index columns (by string names) or rows (by integer index or iterable of indices or bools)."""
-> 1764 return self._getitem(
1765 key,
1766 )
File /opt/conda/lib/python3.10/site-packages/datasets/arrow_dataset.py:1749, in Dataset._getitem(self, key, decoded, **kwargs)
1747 formatter = get_formatter(format_type, features=self.features, decoded=decoded, **format_kwargs)
1748 pa_subtable = query_table(self._data, key, indices=self._indices if self._indices is not None else None)
-> 1749 formatted_output = format_table(
1750 pa_subtable, key, formatter=formatter, format_columns=format_columns, output_all_columns=output_all_columns
1751 )
1752 return formatted_output
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:540, in format_table(table, key, formatter, format_columns, output_all_columns)
538 else:
539 pa_table_to_format = pa_table.drop(col for col in pa_table.column_names if col not in format_columns)
--> 540 formatted_output = formatter(pa_table_to_format, query_type=query_type)
541 if output_all_columns:
542 if isinstance(formatted_output, MutableMapping):
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:281, in Formatter.__call__(self, pa_table, query_type)
279 def __call__(self, pa_table: pa.Table, query_type: str) -> Union[RowFormat, ColumnFormat, BatchFormat]:
280 if query_type == "row":
--> 281 return self.format_row(pa_table)
282 elif query_type == "column":
283 return self.format_column(pa_table)
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/torch_formatter.py:57, in TorchFormatter.format_row(self, pa_table)
56 def format_row(self, pa_table: pa.Table) -> dict:
---> 57 row = self.numpy_arrow_extractor().extract_row(pa_table)
58 return self.recursive_tensorize(row)
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:154, in NumpyArrowExtractor.extract_row(self, pa_table)
153 def extract_row(self, pa_table: pa.Table) -> dict:
--> 154 return _unnest(self.extract_batch(pa_table))
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:160, in NumpyArrowExtractor.extract_batch(self, pa_table)
159 def extract_batch(self, pa_table: pa.Table) -> dict:
--> 160 return {col: self._arrow_array_to_numpy(pa_table[col]) for col in pa_table.column_names}
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:160, in <dictcomp>(.0)
159 def extract_batch(self, pa_table: pa.Table) -> dict:
--> 160 return {col: self._arrow_array_to_numpy(pa_table[col]) for col in pa_table.column_names}
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:196, in NumpyArrowExtractor._arrow_array_to_numpy(self, pa_array)
194 array: List = pa_array.to_numpy(zero_copy_only=zero_copy_only).tolist()
195 if len(array) > 0:
--> 196 if any(
197 (isinstance(x, np.ndarray) and (x.dtype == np.object or x.shape != array[0].shape))
198 or (isinstance(x, float) and np.isnan(x))
199 for x in array
200 ):
201 return np.array(array, copy=False, **{**self.np_array_kwargs, "dtype": np.object})
202 return np.array(array, copy=False, **self.np_array_kwargs)
File /opt/conda/lib/python3.10/site-packages/datasets/formatting/formatting.py:197, in <genexpr>(.0)
194 array: List = pa_array.to_numpy(zero_copy_only=zero_copy_only).tolist()
195 if len(array) > 0:
196 if any(
--> 197 (isinstance(x, np.ndarray) and (x.dtype == np.object or x.shape != array[0].shape))
198 or (isinstance(x, float) and np.isnan(x))
199 for x in array
200 ):
201 return np.array(array, copy=False, **{**self.np_array_kwargs, "dtype": np.object})
202 return np.array(array, copy=False, **self.np_array_kwargs)
File /opt/conda/lib/python3.10/site-packages/numpy/__init__.py:324, in __getattr__(attr)
319 warnings.warn(
320 f"In the future `np.{attr}` will be defined as the "
321 "corresponding NumPy scalar.", FutureWarning, stacklevel=2)
323 if attr in __former_attrs__:
--> 324 raise AttributeError(__former_attrs__[attr])
326 if attr == 'testing':
327 import numpy.testing as testing
AttributeError: module 'numpy' has no attribute 'object'.
`np.object` was a deprecated alias for the builtin `object`. To avoid this error in existing code, use `object` by itself. Doing this will not modify any behavior and is safe.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
Please help me to resolve the above error
### Steps to reproduce the bug
Please resolve the issue of deprecated function np.object to object in the numpy
### Expected behavior
np.object should be written as object only
### Environment info
kaggle notebook
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PR_kwDODunzps5m9JgW
| 6,665 |
Allow SplitDict setitem to replace existing SplitInfo
|
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Fix this code provided by @clefourrier
```python
import datasets
import os
token = os.getenv("TOKEN")
results = datasets.load_dataset("gaia-benchmark/results_public", "2023", token=token, download_mode=datasets.DownloadMode.FORCE_REDOWNLOAD)
results["test"] = datasets.Dataset.from_list([row for row in results["test"] if row["model"] != "StateFlow"])
results["test"].push_to_hub("gaia-benchmark/results_public", "2023", token=token, split="test")
```
```
ValueError Traceback (most recent call last)
Cell In[43], line 1
----> 1 results["test"].push_to_hub("gaia-benchmark/results_public", "2023", token=token, split="test")
File ~/miniconda3/envs/default310/lib/python3.10/site-packages/datasets/arrow_dataset.py:5498, in Dataset.push_to_hub(self, repo_id, config_name, split, private, token, branch, max_shard_size, num_shards, embed_external_files)
5496 repo_info.dataset_size = (repo_info.dataset_size or 0) + dataset_nbytes
5497 repo_info.size_in_bytes = repo_info.download_size + repo_info.dataset_size
-> 5498 repo_info.splits[split] = SplitInfo(
5499 split, num_bytes=dataset_nbytes, num_examples=len(self), dataset_name=dataset_name
5500 )
5501 info_to_dump = repo_info
5502 # create the metadata configs if it was uploaded with push_to_hub before metadata configs existed
File ~/miniconda3/envs/default310/lib/python3.10/site-packages/datasets/splits.py:541, in SplitDict.__setitem__(self, key, value)
539 raise ValueError(f"Cannot add elem. (key mismatch: '{key}' != '{value.name}')")
540 if key in self:
--> 541 raise ValueError(f"Split {key} already present")
542 super().__setitem__(key, value)
ValueError: Split test already present
```
|
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| 2,135,483,978 |
PR_kwDODunzps5m67g0
| 6,664 |
Revert the changes in `arrow_writer.py` from #6636
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#6636 broke `write_examples_on_file` and `write_batch` from the class `ArrowWriter`. I'm undoing these changes. See #6663.
Note the current implementation doesn't keep the order of the columns and the schema, thus setting a wrong schema for each column.
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| 2,135,480,811 |
I_kwDODunzps5_SNnr
| 6,663 |
`write_examples_on_file` and `write_batch` are broken in `ArrowWriter`
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[] | null | 3 | 2024-02-15T01:43:27 | 2024-02-16T09:25:00 | 2024-02-16T09:25:00 |
CONTRIBUTOR
| null | null | null |
### Describe the bug
`write_examples_on_file` and `write_batch` are broken in `ArrowWriter` since #6636. The order between the columns and the schema is not preserved anymore. So these functions don't work anymore unless the order happens to align well.
### Steps to reproduce the bug
Try to do `write_batch` with anything that has many columns, and it's likely to break.
### Expected behavior
I expect these functions to work, instead of it trying to cast a column to its incorrect type.
### Environment info
- `datasets` version: 2.17.0
- Platform: Linux-5.15.0-1040-aws-x86_64-with-glibc2.35
- Python version: 3.10.13
- `huggingface_hub` version: 0.19.4
- PyArrow version: 15.0.0
- Pandas version: 2.2.0
- `fsspec` version: 2023.10.0
|
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| 2,132,425,812 |
PR_kwDODunzps5mwgKP
| 6,662 |
fix: show correct package name to install biopython
|
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When you try to download a dataset that uses [biopython](https://github.com/biopython/biopython), like `load_dataset("InstaDeepAI/multi_species_genomes")`, you get the error:
```
>>> from datasets import load_dataset
>>> dataset = load_dataset("InstaDeepAI/multi_species_genomes")
/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py:1454: FutureWarning: The repository for InstaDeepAI/multi_species_genomes contains custom code which must be executed to correctly load the dataset. You can inspect the repository content at https://hf.co/datasets/InstaDeepAI/multi_species_genomes
You can avoid this message in future by passing the argument `trust_remote_code=True`.
Passing `trust_remote_code=True` will be mandatory to load this dataset from the next major release of `datasets`.
warnings.warn(
Downloading builder script: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 7.51k/7.51k [00:00<00:00, 7.67MB/s]
Downloading readme: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 17.2k/17.2k [00:00<00:00, 11.0MB/s]
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py", line 2548, in load_dataset
builder_instance = load_dataset_builder(
File "/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py", line 2220, in load_dataset_builder
dataset_module = dataset_module_factory(
File "/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py", line 1871, in dataset_module_factory
raise e1 from None
File "/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py", line 1844, in dataset_module_factory
).get_module()
File "/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py", line 1466, in get_module
local_imports = _download_additional_modules(
File "/home/j.vangoey/.pyenv/versions/multi_species_genomes/lib/python3.10/site-packages/datasets/load.py", line 346, in _download_additional_modules
raise ImportError(
ImportError: To be able to use InstaDeepAI/multi_species_genomes, you need to install the following dependency: Bio.
Please install it using 'pip install Bio' for instance.
>>>
```
`Bio` comes from the `biopython` package that can be installed with `pip install biopython`, not with `pip install Bio` as suggested.
This PR adds special logic to show the correct package name in the error message of ` _download_additional_modules`, similarly as is done for `sklearn` / `scikit-learn` already.
There are more packages where importable module name differs from the PyPI package name, so this could be made more generic, like:
```
# Mapping of importable module names to their PyPI package names
package_map = {
"sklearn": "scikit-learn",
"Bio": "biopython",
"PIL": "Pillow",
"bs4": "beautifulsoup4"
}
for module_name, pypi_name in package_map.items():
if module_name in needs_to_be_installed.keys():
needs_to_be_installed[module_name] = pypi_name
```
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I_kwDODunzps5_GEJL
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Import error on Google Colab
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[] | null | 4 | 2024-02-13T13:12:40 | 2024-02-25T16:37:54 | 2024-02-14T08:04:47 |
NONE
| null | null | null |
### Describe the bug
Cannot be imported on Google Colab, the import throws the following error:
ValueError: pyarrow.lib.IpcWriteOptions size changed, may indicate binary incompatibility. Expected 88 from C header, got 72 from PyObject
### Steps to reproduce the bug
1. `! pip install -U datasets`
2. `import datasets`
### Expected behavior
Should be possible to use the library
### Environment info
- `datasets` version: 2.17.0
- Platform: Linux-6.1.58+-x86_64-with-glibc2.35
- Python version: 3.10.12
- `huggingface_hub` version: 0.20.3
- PyArrow version: 15.0.0
- Pandas version: 1.5.3
- `fsspec` version: 2023.6.0
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PR_kwDODunzps5mu9wU
| 6,660 |
Automatic Conversion for uint16/uint32 to Compatible PyTorch Dtypes
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This PR addresses an issue encountered when utilizing uint16 or uint32 datatypes with datasets, followed by attempting to convert these datasets into PyTorch-compatible formats. Currently, doing so results in a TypeError due to incompatible datatype conversion, as illustrated by the following example:
```python
from datasets import Dataset, Sequence, Value, Features
def gen():
for i in range(100):
yield {'seq': list(range(i, i + 20))}
ds = Dataset.from_generator(gen, features=Features({'seq': Sequence(feature=Value(dtype='uint16'), length=-1)}))
ds.set_format('torch')
print(ds[0])
```
This code snippet triggers the following error due to the inability to convert numpy.uint16 arrays to a PyTorch-supported format:
```
TypeError: can't convert np.ndarray of type numpy.uint16. The only supported types are: float64, float32, float16, complex64, complex128, int64, int32, int16, int8, uint8, and bool.
```
This PR introduces an automatic mechanism to convert np.uint16 and np.uint32 datatypes to np.int64 for seamless compatibility with PyTorch formats, simplifying workflows and improving developer experience by eliminating the need for manual conversion handling.
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PR_kwDODunzps5mlmmo
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Change default compression argument for JsonDatasetWriter
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Change default compression type from `None` to "infer", to align with pandas' defaults.
Documentation asks the user to supply `to_json_kwargs` with arguments suitable for pandas' `to_json` method. At the same time, while pandas' by default uses ["infer"](https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.to_json.html) for compression, datasets enforce `None` as default. This, likely, confuses user, as they expect the same behaviour, i.e they expect that if they name their output file as "dataset.jsonl.zst" then the compression would be inferred as "zstd" and file will be compressed before writing.
Moreover, while it is probably outside of the scope of this pull request, `compression` argument needs to be capable of taking `dict` as input (along with `str`), as it does in pandas, in order to allow user to specify compression parameters. Current implementation will likely fail with `NotImplementedError`, as it expects either `None` or `str` specifying compression algo.
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PR_kwDODunzps5mlZyb
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[Resumable IterableDataset] Add IterableDataset state_dict
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A simple implementation of a mechanism to resume an IterableDataset.
It works by restarting at the latest shard and skip samples. It provides fast resuming (though not instantaneous).
Example:
```python
from datasets import Dataset, concatenate_datasets
ds = Dataset.from_dict({"a": range(5)}).to_iterable_dataset(num_shards=3)
ds = concatenate_datasets([ds] * 2)
print(f"{ds.state_dict()=}")
for i, example in enumerate(ds):
print(example)
if i == 6:
state_dict = ds.state_dict()
print("checkpoint")
ds.load_state_dict(state_dict)
print(f"resuming from checkpoint {ds.state_dict()=}")
for example in ds:
print(example)
```
returns
```
ds.state_dict()={'ex_iterable_idx': 0, 'ex_iterables': [{'shard_idx': 0, 'shard_example_idx': 0}, {'shard_idx': 0, 'shard_example_idx': 0}]}
{'a': 0}
{'a': 1}
{'a': 2}
{'a': 3}
{'a': 4}
{'a': 0}
{'a': 1}
checkpoint
{'a': 2}
{'a': 3}
{'a': 4}
resuming from checkpoint ds.state_dict()={'ex_iterable_idx': 1, 'ex_iterables': [{'shard_idx': 3, 'shard_example_idx': 0}, {'shard_idx': 0, 'shard_example_idx': 2}]}
{'a': 2}
{'a': 3}
{'a': 4}
```
using torchdata:
```python
from datasets import load_dataset
from torchdata.stateful_dataloader import StatefulDataLoader
my_iterable_dataset = load_dataset("deepmind/code_contests", streaming=True, split="train")
dataloader = StatefulDataLoader(my_iterable_dataset, batch_size=32, num_workers=4)
# save in the middle of training
state_dict = dataloader.state_dict()
# and resume later
dataloader.load_state_dict(state_dict)
```
docs: https://huggingface.co/docs/datasets/main/en/use_with_pytorch#checkpoint-and-resume
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I_kwDODunzps5-6DTN
| 6,657 |
Release not pushed to conda channel
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NONE
| null | null | null |
### Describe the bug
The github actions step to publish the release 2.17.0 to conda channel has failed due to expired token. Can some one please update the anaconda token rerun the failed action? @albertvillanova ?
### Steps to reproduce the bug
Please see this actions [link](https://github.com/huggingface/datasets/actions/runs/7842473662)
### Expected behavior
The action runs successfully and the latest release is pushed to HuggingFace conda channel
### Environment info
Not applicable.
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Batched dataset map throws exception that cannot cast fixed length array to Sequence
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[] | null | 2 | 2024-02-09T11:23:19 | 2024-02-12T08:26:53 | 2024-02-12T08:26:53 |
NONE
| null | null | null |
### Describe the bug
I encountered a TypeError when batch processing a dataset with Sequence features in datasets package version 2.16.1. The error arises from a mismatch in handling fixed-size list arrays during the map function execution. Debugging pinpoints the issue to an if-statement in datasets/table.py, line 2093, failing to correctly process sequence lengths.
### Steps to reproduce the bug
Create virtual environment and activate
```
virtualenv venv
source venv/bin/activate
```
Then install the datasets package (I'm using the latest version)
```
pip install datasets==2.16.1
```
Then run
```python
# bug.py
from datasets import Dataset
from datasets.features import Features, Sequence, Value
data = {
"num": [[1, 2], [3, 4]],
}
features = Features({'num': Sequence(feature=Value(dtype='int32'), length=2)})
dataset = Dataset.from_dict(data, features=features)
dataset.map(lambda x: x, batched=True, batch_size=1)
```
### Expected behavior
I get the following stack trace
```
Map: 50%|█████ | 1/2 [00:00<00:00, 423.92 examples/s]
Traceback (most recent call last):
File "/PATH/TO/BUG_PORT/bug.py", line 9, in <module>
dataset.map(lambda x: x, batched=True, batch_size=1)
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/arrow_dataset.py", line 592, in wrapper
out: Union["Dataset", "DatasetDict"] = func(self, *args, **kwargs)
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/arrow_dataset.py", line 557, in wrapper
out: Union["Dataset", "DatasetDict"] = func(self, *args, **kwargs)
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/arrow_dataset.py", line 3093, in map
for rank, done, content in Dataset._map_single(**dataset_kwargs):
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/arrow_dataset.py", line 3489, in _map_single
writer.write_batch(batch)
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 551, in write_batch
array = cast_array_to_feature(col_values, col_type) if col_type is not None else col_values
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/table.py", line 1797, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/table.py", line 1797, in <listcomp>
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
File "/PATH/TO/BUG_PORT/venv/lib/python3.9/site-packages/datasets/table.py", line 2111, in cast_array_to_feature
raise TypeError(f"Couldn't cast array of type\n{array.type}\nto\n{feature}")
TypeError: Couldn't cast array of type
fixed_size_list<item: int32>[2]
to
Sequence(feature=Value(dtype='int32', id=None), length=2, id=None)
```
After some debugging, I found that the if-statement that is actually failing is line 2093 in `datasets/table.py`
```python
# datasets/table.py
...
2093 if feature.length * len(array) == len(array_values):
2094 return pa.FixedSizeListArray.from_arrays(_c(array_values, feature.feature), feature.length)
...
```
### Environment info
Platform: MacOS
Datasets version: datasets==2.16.1
Python version: 3.9.6
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I_kwDODunzps6ccTnn
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The dataset viewer should be available soon. Please retry later.
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NONE
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### Describe the bug
After waiting for 2 hours, it still presents ``The dataset viewer should be available soon. Please retry later.''
### Steps to reproduce the bug
dataset link: https://huggingface.co/datasets/BryanW/HI_EDIT
### Expected behavior
Present the dataset viewer.
### Environment info
NA
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PR_kwDODunzps6AYofJ
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Disallow video push_to_hub
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fix docs relative links
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PR_kwDODunzps6ARg7m
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Small addition to video docs
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PR_kwDODunzps6AOWI8
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Allow video with disabeld decoding without decord
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for the viewer, this way it can use Video(decode=False) and doesn't need decord (which causes segfaults)
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PR_kwDODunzps6AIEY-
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Don't embed videos
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don't include video bytes when running download_and_prepare(format="parquet")
this also affects push_to_hub which will just upload the local paths of the videos though
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| 2,618,758,399 |
PR_kwDODunzps6AHlK1
| 7,258 |
Always set non-null writer batch size
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bug introduced in #7230, it was preventing the Viewer limit writes to work
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PR_kwDODunzps6AHEfy
| 7,257 |
fix ci for pyarrow 18
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PR_kwDODunzps6AG_qk
| 7,256 |
Retry all requests timeouts
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as reported in https://github.com/huggingface/datasets/issues/6843
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PR_kwDODunzps6AG25R
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fix decord import
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delay the import until Video() is instantiated + also import duckdb first (otherwise importing duckdb later causes a segfault)
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PR_kwDODunzps5_41s7
| 7,252 |
Add IterableDataset.shard()
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Will be useful to distribute a dataset across workers (other than pytorch) like spark
I also renamed `.n_shards` -> `.num_shards` for consistency and kept the old name for backward compatibility. And a few changes in internal functions for consistency as well (rank, world_size -> num_shards, index)
Breaking change: the new default for `contiguous` in `Dataset.shard()` is `True`, but imo not a big deal since I couldn't find any usage of `contiguous=False` internally (we always do contiguous=True for map-style datasets since its more optimized) or in the wild
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PR_kwDODunzps5_zPTt
| 7,251 |
Missing video docs
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PR_kwDODunzps5_zDPS
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Basic XML support (mostly copy pasted from text)
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enable the viewer for datasets like https://huggingface.co/datasets/FrancophonIA/e-calm (there will be more and more apparently)
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Set dev version
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PR_kwDODunzps5_eaiE
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Release: 3.0.2
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PR_kwDODunzps5_dqWP
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use huggingface_hub offline mode
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and better handling of LocalEntryNotfoundError cc @Wauplin
follow up to #7234
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I_kwDODunzps6a91AU
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`push_to_hub` overwrite argument
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NONE
| null | null | null |
### Feature request
Add an `overwrite` argument to the `push_to_hub` method.
### Motivation
I want to overwrite a repo without deleting it on Hugging Face. Is this possible? I couldn't find anything in the documentation or tutorials.
### Your contribution
I can create a PR.
|
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PR_kwDODunzps5_GIvw
| 7,236 |
[MINOR:TYPO] Update arrow_dataset.py
|
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Fix wrong link.
csv kwargs docstring link was pointing to pandas json docs.
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PR_kwDODunzps5-8Z_-
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No need for dataset_info
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save a useless call to /api/datasets/repo_id
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PR_kwDODunzps5-62rY
| 7,232 |
(Super tiny doc update) Mention to_polars
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polars is also quite popular now, thus this tiny update can tell users polars is supported
|
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PR_kwDODunzps5-1jP8
| 7,231 |
Fix typo in image dataset docs
|
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Fix typo in image dataset docs.
Typo reported by @datavistics.
|
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PR_kwDODunzps5-ttUV
| 7,230 |
Video support
|
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(wip and experimental)
adding the `Video` type based on `VideoReader` from `decord`
```python
>>>from datasets import load_dataset
>>> ds = load_dataset("path/to/videos", split="train").with_format("torch")
>>> print(ds[0]["video"])
<decord.video_reader.VideoReader object at 0x337a47910>
>>> print(ds[0]["video"][0])
tensor([[[73, 73, 73],
[73, 73, 73],
[73, 73, 73],
...,
[23, 23, 23],
[23, 23, 23],
[23, 23, 23]]], dtype=torch.uint8)
```
the storage is the same as for audio and images: `{"path": pa.string(), "bytes": pa.binary()}` and I did a small to keep the hf:// URL in the "path" field if possible, this way the viewer can link to fiels on the hub if possible
|
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PR_kwDODunzps5-rgrx
| 7,229 |
handle config_name=None in push_to_hub
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This caught me out - thought it might be better to explicitly handle None?
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bump fsspec
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PR_kwDODunzps5-D6_P
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Preserve features in iterable dataset.filter
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Fixes example in #7208 - I'm not sure what other checks I should do? @lhoestq
I also haven't thought hard about the concatenate / interleaving example iterables but think this might work assuming that features are either all identical or None?
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I_kwDODunzps6ZgsVg
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Iterable dataset.filter should not override features
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CONTRIBUTOR
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### Describe the bug
When calling filter on an iterable dataset, the features get set to None
### Steps to reproduce the bug
import numpy as np
import time
from datasets import Dataset, Features, Array3D
```python
features=Features(**{"array0": Array3D((None, 10, 10), dtype="float32"), "array1": Array3D((None,10,10), dtype="float32")})
dataset = Dataset.from_dict({f"array{i}": [np.zeros((x,10,10), dtype=np.float32) for x in [2000,1000]*25] for i in range(2)}, features=features)
ds = dataset.to_iterable_dataset()
orig_column_names = ds.column_names
ds = ds.filter(lambda x: True)
assert ds.column_names == orig_column_names
```
### Expected behavior
Filter should preserve features information
### Environment info
3.0.2
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PR_kwDODunzps599w0I
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fix ci benchmark
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we're not using the benchmarks anymore + they were not working anyway due to token permissions
I keep the code in case we ever want to re-run the benchmark manually
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PR_kwDODunzps599Hem
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fix unbatched arrow map for iterable datasets
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Fixes the bug when applying map to an arrow-formatted iterable dataset described here:
https://github.com/huggingface/datasets/issues/6833#issuecomment-2399903885
```python
from datasets import load_dataset
ds = load_dataset("rotten_tomatoes", split="train", streaming=True)
ds = ds.with_format("arrow").map(lambda x: x)
for ex in ds:
pass
```
@lhoestq
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PR_kwDODunzps598skr
| 7,203 |
with_format docstring
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[] | null | 1 | 2024-10-08T13:05:19 | 2024-10-08T13:13:12 | 2024-10-08T13:13:05 |
MEMBER
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reported at https://github.com/huggingface/datasets/issues/3444
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| 2,567,921,694 |
PR_kwDODunzps59sgRd
| 7,200 |
Fix the environment variable for huggingface cache
|
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CONTRIBUTOR
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Resolve #6256. As far as I tested, `HF_DATASETS_CACHE` was ignored and I could not specify the cache directory at all except for the default one by this environment variable. `HF_HOME` has worked. Perhaps the recent change on file downloading by `huggingface_hub` could affect this bug.
In my testing, I could not specify the cache directory even by `load_dataset("dataset_name" cache_dir="...")`. It might be another issue. I also welcome any advice to solve this issue.
|
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| 2,563,364,199 |
I_kwDODunzps6YydVn
| 7,194 |
datasets.exceptions.DatasetNotFoundError for private dataset
|
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[] | null | 2 | 2024-10-03T07:49:36 | 2024-10-03T10:09:28 | 2024-10-03T10:09:28 |
NONE
| null | null | null |
### Describe the bug
The following Python code tries to download a private dataset and fails with the error `datasets.exceptions.DatasetNotFoundError: Dataset 'ClimatePolicyRadar/all-document-text-data-weekly' doesn't exist on the Hub or cannot be accessed.`. Downloading a public dataset doesn't work.
``` py
from datasets import load_dataset
_ = load_dataset("ClimatePolicyRadar/all-document-text-data-weekly")
```
This seems to be just an issue with my machine config as the code above works with a colleague's machine. So far I have tried:
- logging back out and in from the Huggingface CLI using `huggingface-cli logout`
- manually removing the token cache at `/Users/kalyan/.cache/huggingface/token` (found using `huggingface-cli env`)
- manually passing a token in `load_dataset`
My output of `huggingface-cli whoami`:
```
kdutia
orgs: ClimatePolicyRadar
```
### Steps to reproduce the bug
```
python
Python 3.12.2 (main, Feb 6 2024, 20:19:44) [Clang 15.0.0 (clang-1500.1.0.2.5)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from datasets import load_dataset
>>> _ = load_dataset("ClimatePolicyRadar/all-document-text-data-weekly")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/kalyan/Library/Caches/pypoetry/virtualenvs/open-data-cnKQNmjn-py3.12/lib/python3.12/site-packages/datasets/load.py", line 2074, in load_dataset
builder_instance = load_dataset_builder(
^^^^^^^^^^^^^^^^^^^^^
File "/Users/kalyan/Library/Caches/pypoetry/virtualenvs/open-data-cnKQNmjn-py3.12/lib/python3.12/site-packages/datasets/load.py", line 1795, in load_dataset_builder
dataset_module = dataset_module_factory(
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/kalyan/Library/Caches/pypoetry/virtualenvs/open-data-cnKQNmjn-py3.12/lib/python3.12/site-packages/datasets/load.py", line 1659, in dataset_module_factory
raise e1 from None
File "/Users/kalyan/Library/Caches/pypoetry/virtualenvs/open-data-cnKQNmjn-py3.12/lib/python3.12/site-packages/datasets/load.py", line 1597, in dataset_module_factory
raise DatasetNotFoundError(f"Dataset '{path}' doesn't exist on the Hub or cannot be accessed.") from e
datasets.exceptions.DatasetNotFoundError: Dataset 'ClimatePolicyRadar/all-document-text-data-weekly' doesn't exist on the Hub or cannot be accessed.
>>>
```
### Expected behavior
The dataset downloads successfully.
### Environment info
From `huggingface-cli env`:
```
- huggingface_hub version: 0.25.1
- Platform: macOS-14.2.1-arm64-arm-64bit
- Python version: 3.12.2
- Running in iPython ?: No
- Running in notebook ?: No
- Running in Google Colab ?: No
- Running in Google Colab Enterprise ?: No
- Token path ?: /Users/kalyan/.cache/huggingface/token
- Has saved token ?: True
- Who am I ?: kdutia
- Configured git credential helpers: osxkeychain
- FastAI: N/A
- Tensorflow: N/A
- Torch: N/A
- Jinja2: 3.1.4
- Graphviz: N/A
- keras: N/A
- Pydot: N/A
- Pillow: N/A
- hf_transfer: N/A
- gradio: N/A
- tensorboard: N/A
- numpy: 2.1.1
- pydantic: N/A
- aiohttp: 3.10.8
- ENDPOINT: https://huggingface.co
- HF_HUB_CACHE: /Users/kalyan/.cache/huggingface/hub
- HF_ASSETS_CACHE: /Users/kalyan/.cache/huggingface/assets
- HF_TOKEN_PATH: /Users/kalyan/.cache/huggingface/token
- HF_HUB_OFFLINE: False
- HF_HUB_DISABLE_TELEMETRY: False
- HF_HUB_DISABLE_PROGRESS_BARS: None
- HF_HUB_DISABLE_SYMLINKS_WARNING: False
- HF_HUB_DISABLE_EXPERIMENTAL_WARNING: False
- HF_HUB_DISABLE_IMPLICIT_TOKEN: False
- HF_HUB_ENABLE_HF_TRANSFER: False
- HF_HUB_ETAG_TIMEOUT: 10
- HF_HUB_DOWNLOAD_TIMEOUT: 10
```
from `datasets-cli env`:
```
- `datasets` version: 3.0.1
- Platform: macOS-14.2.1-arm64-arm-64bit
- Python version: 3.12.2
- `huggingface_hub` version: 0.25.1
- PyArrow version: 17.0.0
- Pandas version: 2.2.3
- `fsspec` version: 2024.6.1
```
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PR_kwDODunzps59VSrf
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Pin multiprocess<0.70.1 to align with dill<0.3.9
|
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[] | null | 1 | 2024-10-02T05:40:18 | 2024-10-02T06:08:25 | 2024-10-02T06:08:23 |
MEMBER
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Pin multiprocess<0.70.1 to align with dill<0.3.9.
Note that multiprocess-0.70.1 requires dill-0.3.9: https://github.com/uqfoundation/multiprocess/releases/tag/0.70.17
Fix #7186.
|
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I_kwDODunzps6Ym3FN
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pinning `dill<0.3.9` without pinning `multiprocess`
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NONE
| null | null | null |
### Describe the bug
The [latest `multiprocess` release](https://github.com/uqfoundation/multiprocess/releases/tag/0.70.17) requires `dill>=0.3.9` which causes issues when installing `datasets` without backtracking during package version resolution. Is it possible to add a pin for multiprocess so something like `multiprocess<=0.70.16` so that the `dill` version is compatible?
### Steps to reproduce the bug
NA
### Expected behavior
NA
### Environment info
NA
|
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I_kwDODunzps6Yf77M
| 7,185 |
CI benchmarks are broken
|
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[] | null | 1 | 2024-10-01T08:16:08 | 2024-10-09T16:07:48 | 2024-10-09T16:07:48 |
MEMBER
| null | null | null |
Since Aug 30, 2024, CI benchmarks are broken: https://github.com/huggingface/datasets/actions/runs/11108421214/job/30861323975
```
{"level":"error","message":"Resource not accessible by integration","name":"HttpError","request":{"body":"{\"body\":\"<details>\\n<summary>Show benchmarks</summary>\\n\\nPyArrow==8.0.0\\n\\n<details>\\n<summary>Show updated benchmarks!</summary>\\n\\n### Benchmark: benchmark_array_xd.json\\n\\n| metric | read_batch_formatted_as_numpy after write_array2d |
...
"headers":{"accept":"application/vnd.github.v3+json","authorization":"token [REDACTED]","content-type":"application/json; charset=utf-8","user-agent":"octokit-rest.js/18.0.0 octokit-core.js/3.6.0 Node.js/16.20.2 (linux; x64)"},"method":"POST","request":{"agent":{"_events":{},"_eventsCount":2,"cache":
...
"response":{"data":{"documentation_url":"https://docs.github.com/rest/issues/comments#create-an-issue-comment","message":"Resource not accessible by integration","status":"403"},
...
"stack":"HttpError: Resource not accessible by integration\n at /usr/lib/node_modules/@dvcorg/cml/node_modules/@octokit/request/dist-node/index.js:86:21\n at processTicksAndRejections (node:internal/process/task_queues:96:5)\n at async Job.doExecute (/usr/lib/node_modules/@dvcorg/cml/node_modules/bottleneck/light.js:405:18)","status":403}
```
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PR_kwDODunzps59IPEf
| 7,184 |
Pin dill<0.3.9 to fix CI
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Pin dill<0.3.9 to fix CI for deps-latest.
Note that dill-0.3.9 was released yesterday Sep 29, 2024:
- https://pypi.org/project/dill/0.3.9/
- https://github.com/uqfoundation/dill/releases/tag/0.3.9
Fix #7183.
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CI is broken for deps-latest
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[] | null | 0 | 2024-09-30T14:02:07 | 2024-09-30T14:38:58 | 2024-09-30T14:38:58 |
MEMBER
| null | null | null |
See: https://github.com/huggingface/datasets/actions/runs/11106149906/job/30853879890
```
=========================== short test summary info ============================
FAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_filter_caching_on_disk - AssertionError: Lists differ: [{'fi[44 chars] {'filename': '/tmp/tmp6xcyyjs4/cache-9533fe2601cd3e48.arrow'}] != [{'fi[44 chars] {'filename': '/tmp/tmp6xcyyjs4/cache-e6e0a8b830976289.arrow'}]
First differing element 1:
{'filename': '/tmp/tmp6xcyyjs4/cache-9533fe2601cd3e48.arrow'}
{'filename': '/tmp/tmp6xcyyjs4/cache-e6e0a8b830976289.arrow'}
[{'filename': '/tmp/tmp6xcyyjs4/dataset0.arrow'},
- {'filename': '/tmp/tmp6xcyyjs4/cache-9533fe2601cd3e48.arrow'}]
? ^^^^^ --------
+ {'filename': '/tmp/tmp6xcyyjs4/cache-e6e0a8b830976289.arrow'}]
? ++++++++++ ^^ +
FAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_caching_on_disk - AssertionError: Lists differ: [{'filename': '/tmp/tmp5gxrti_n/cache-e58d327daec8626f.arrow'}] != [{'filename': '/tmp/tmp5gxrti_n/cache-d87234c5763e54a3.arrow'}]
First differing element 0:
{'filename': '/tmp/tmp5gxrti_n/cache-e58d327daec8626f.arrow'}
{'filename': '/tmp/tmp5gxrti_n/cache-d87234c5763e54a3.arrow'}
- [{'filename': '/tmp/tmp5gxrti_n/cache-e58d327daec8626f.arrow'}]
? ^^ -----------
+ [{'filename': '/tmp/tmp5gxrti_n/cache-d87234c5763e54a3.arrow'}]
? +++++++++++ ^^
FAILED tests/test_fingerprint.py::TokenizersHashTest::test_hash_regex - NameError: name 'log' is not defined
FAILED tests/test_fingerprint.py::RecurseHashTest::test_hash_ignores_line_definition_of_function - AssertionError: '52e56ee04ad92499' != '0a4f75cec280f634'
- 52e56ee04ad92499
+ 0a4f75cec280f634
FAILED tests/test_fingerprint.py::RecurseHashTest::test_hash_ipython_function - AssertionError: 'a6bd2041ca63d6c0' != '517bf36b7eecdef5'
- a6bd2041ca63d6c0
+ 517bf36b7eecdef5
FAILED tests/test_fingerprint.py::HashingTest::test_hash_tiktoken_encoding - NameError: name 'log' is not defined
FAILED tests/test_fingerprint.py::HashingTest::test_hash_torch_compiled_module - NameError: name 'log' is not defined
FAILED tests/test_fingerprint.py::HashingTest::test_hash_torch_generator - NameError: name 'log' is not defined
FAILED tests/test_fingerprint.py::HashingTest::test_hash_torch_tensor - NameError: name 'log' is not defined
FAILED tests/test_fingerprint.py::HashingTest::test_set_doesnt_depend_on_order - NameError: name 'log' is not defined
FAILED tests/test_fingerprint.py::HashingTest::test_set_stable - NameError: name 'log' is not defined
ERROR tests/test_iterable_dataset.py::test_iterable_dataset_from_file - NameError: name 'log' is not defined
= 11 failed, 2850 passed, 3 skipped, 23 warnings, 1 error in 191.06s (0:03:11) =
```
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PR_kwDODunzps59GdLS
| 7,182 |
Support features in metadata configs
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Support features in metadata configs, like:
```
configs:
- config_name: default
features:
- name: id
dtype: int64
- name: name
dtype: string
- name: score
dtype: float64
```
This will allow to avoid inference of data types.
Currently, we allow passing this information in the `dataset_info` (instead of `configs`) field, but this is not intuitive and it is not properly documented.
TODO:
- [ ] Document usage
|
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| 2,554,917,019 |
PR_kwDODunzps59Br4E
| 7,181 |
Fix datasets export to JSON
|
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I_kwDODunzps6YPq6O
| 7,180 |
Memory leak when wrapping datasets into PyTorch Dataset without explicit deletion
|
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NONE
| null | null | null |
### Describe the bug
I've encountered a memory leak when wrapping the HuggingFace dataset into a PyTorch Dataset. The RAM usage constantly increases during iteration if items are not explicitly deleted after use.
### Steps to reproduce the bug
Steps to reproduce:
Create a PyTorch Dataset wrapper for 'nebula/cc12m':
````
from torch.utils.data import Dataset
from tqdm import tqdm
from datasets import load_dataset
from torchvision import transforms
Image.MAX_IMAGE_PIXELS = None
class CC12M(Dataset):
def __init__(self, path_or_name='nebula/cc12m', split='train', transform=None, single_caption=True):
self.raw_dataset = load_dataset(path_or_name)[split]
if transform is None:
self.transform = transforms.Compose([
transforms.Resize((224, 224)),
transforms.CenterCrop(224),
transforms.ToTensor(),
transforms.Normalize(
mean=[0.48145466, 0.4578275, 0.40821073],
std=[0.26862954, 0.26130258, 0.27577711]
)
])
else:
self.transform = transforms.Compose(transform)
self.single_caption = single_caption
self.length = len(self.raw_dataset)
def __len__(self):
return self.length
def __getitem__(self, index):
item = self.raw_dataset[index]
caption = item['txt']
with io.BytesIO(item['webp']) as buffer:
image = Image.open(buffer).convert('RGB')
if self.transform:
image = self.transform(image)
# del item # Uncomment this line to prevent the memory leak
return image, caption
````
Iterate through the dataset without the del item line in __getitem__.
Observe RAM usage increasing constantly.
Add del item at the end of __getitem__:
```
def __getitem__(self, index):
item = self.raw_dataset[index]
caption = item['txt']
with io.BytesIO(item['webp']) as buffer:
image = Image.open(buffer).convert('RGB')
if self.transform:
image = self.transform(image)
del item # This line prevents the memory leak
return image, caption
```
Iterate through the dataset again and observe that RAM usage remains stable.
### Expected behavior
Expected behavior:
RAM usage should remain stable during iteration without needing to explicitly delete items.
Actual behavior:
RAM usage constantly increases unless items are explicitly deleted after use
### Environment info
- `datasets` version: 2.21.0
- Platform: Linux-4.18.0-513.5.1.el8_9.x86_64-x86_64-with-glibc2.28
- Python version: 3.12.4
- `huggingface_hub` version: 0.24.6
- PyArrow version: 17.0.0
- Pandas version: 2.2.2
- `fsspec` version: 2024.6.1
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PR_kwDODunzps585Jcd
| 7,179 |
Support Python 3.11
|
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Support Python 3.11.
Fix #7178.
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Support Python 3.11
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MEMBER
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PR_kwDODunzps585Fx2
| 7,177 |
Fix release instructions
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Fix release instructions.
During last release, I had to make this additional update.
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I_kwDODunzps6YDIUZ
| 7,175 |
[FSTimeoutError] load_dataset
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NONE
| null | null | null |
### Describe the bug
When using `load_dataset`to load [HuggingFaceM4/VQAv2](https://huggingface.co/datasets/HuggingFaceM4/VQAv2), I am getting `FSTimeoutError`.
### Error
```
TimeoutError:
The above exception was the direct cause of the following exception:
FSTimeoutError Traceback (most recent call last)
[/usr/local/lib/python3.10/dist-packages/fsspec/asyn.py](https://klh9mr78js-496ff2e9c6d22116-0-colab.googleusercontent.com/outputframe.html?vrz=colab_20240924-060116_RC00_678132060#) in sync(loop, func, timeout, *args, **kwargs)
99 if isinstance(return_result, asyncio.TimeoutError):
100 # suppress asyncio.TimeoutError, raise FSTimeoutError
--> 101 raise FSTimeoutError from return_result
102 elif isinstance(return_result, BaseException):
103 raise return_result
FSTimeoutError:
```
It usually fails around 5-6 GB.
<img width="847" alt="Screenshot 2024-09-26 at 9 10 19 PM" src="https://github.com/user-attachments/assets/ff91995a-fb55-4de6-8214-94025d6c8470">
### Steps to reproduce the bug
To reproduce it, run this in colab notebook:
```
!pip install -q -U datasets
from datasets import load_dataset
ds = load_dataset('HuggingFaceM4/VQAv2', split="train[:10%]")
```
### Expected behavior
It should download properly.
### Environment info
Using Colab Notebook.
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Set dev version
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PR_kwDODunzps58wjjc
| 7,173 |
Release: 3.0.1
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PR_kwDODunzps58wNQ7
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Add torchdata as a regular test dependency
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Add `torchdata` as a regular test dependency.
Note that previously, `torchdata` was installed from their repo and current main branch (0.10.0.dev) requires Python>=3.9.
Also note they made a recent release: 0.8.0 on Jul 31, 2024.
Fix #7171.
|
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