About the revised version

#1
by Wangyh - opened

Thanks for making this revised version. I was wondering what's the main difference between the old version and revised version. And what' s the motivation to make this new version?

InstaDeep Ltd org

Hi, thanks for your comment. Indeed we added the details of the updated datasets but we were missing a summary of the main differences.
We have now updated the dataset descriptions to include the main updates to the older version. I am adding them below for clarity:

Keypoints about the updated datasets:

  • (1) it maintains similar tasks, number of classes and train and test set sizes as the previous benchmark
  • (2) all the data is now from human samples and from recent and high-quality datasets (see descriptions of each dataset source in the README)
  • (3) randomly generated negative samples have been replaced by existing chunks of genomes not containing the respective elements
  • (4) all datasets have now proper chromosome held-out test sets.

Let us know if you have more questions. Thanks

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