taxonomy update
Browse files- BirdSet.py +100 -6
BirdSet.py
CHANGED
@@ -22,6 +22,8 @@ from .classes import BIRD_NAMES_NIPS4BPLUS, BIRD_NAMES_AMAZON_BASIN, BIRD_NAMES_
|
|
22 |
BIRD_NAMES_HIGH_SIERRAS, BIRD_NAMES_SIERRA_NEVADA, BIRD_NAMES_POWDERMILL_NATURE, BIRD_NAMES_SAPSUCKER, \
|
23 |
BIRD_NAMES_COLUMBIA_COSTA_RICA, BIRD_NAMES_XENOCANTO, BIRD_NAMES_XENOCANTO_M
|
24 |
|
|
|
|
|
25 |
from .descriptions import _BIRD_DB_CITATION, _NIPS4BPLUS_CITATION, _NIPS4BPLUS_DESCRIPTION, \
|
26 |
_HIGH_SIERRAS_DESCRIPTION, _HIGH_SIERRAS_CITATION, _SIERRA_NEVADA_DESCRIPTION, _SIERRA_NEVADA_CITATION, \
|
27 |
_POWDERMILL_NATURE_DESCRIPTION, _POWDERMILL_NATURE_CITATION, _AMAZON_BASIN_DESCRIPTION, _AMAZON_BASIN_CITATION, \
|
@@ -30,9 +32,9 @@ from .descriptions import _BIRD_DB_CITATION, _NIPS4BPLUS_CITATION, _NIPS4BPLUS_D
|
|
30 |
|
31 |
#############################################
|
32 |
_BIRDSET_CITATION = """\
|
33 |
-
@article{
|
34 |
title = {BirdSet: A Multi-Task Benchmark For Avian Diversity Monitoring},
|
35 |
-
author={
|
36 |
year={2024}
|
37 |
}
|
38 |
"""
|
@@ -44,8 +46,8 @@ _BIRDSET_DESCRIPTION = """\
|
|
44 |
contained dataset.
|
45 |
"""
|
46 |
|
47 |
-
base_url = "https://huggingface.co/datasets/
|
48 |
-
|
49 |
|
50 |
class BirdSetConfig(datasets.BuilderConfig):
|
51 |
def __init__(
|
@@ -53,6 +55,9 @@ class BirdSetConfig(datasets.BuilderConfig):
|
|
53 |
name,
|
54 |
citation,
|
55 |
class_list,
|
|
|
|
|
|
|
56 |
**kwargs):
|
57 |
super().__init__(version=datasets.Version("0.0.2"), name=name, **kwargs)
|
58 |
|
@@ -80,6 +85,12 @@ class BirdSetConfig(datasets.BuilderConfig):
|
|
80 |
"peaks": datasets.Sequence(datasets.Value("float64")),
|
81 |
"quality": datasets.Value("string"),
|
82 |
"recordist": datasets.Value("string"),
|
|
|
|
|
|
|
|
|
|
|
|
|
83 |
})
|
84 |
|
85 |
self.features = features
|
@@ -98,6 +109,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
98 |
citation=_SAPSUCKER_WOODS_CITATION,
|
99 |
data_dir=f"{base_url}/SSW",
|
100 |
class_list=BIRD_NAMES_SAPSUCKER,
|
|
|
|
|
|
|
101 |
),
|
102 |
BirdSetConfig(
|
103 |
name="SSW_xc",
|
@@ -105,6 +119,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
105 |
citation=_SAPSUCKER_WOODS_CITATION,
|
106 |
data_dir=f"{base_url}/SSW",
|
107 |
class_list=BIRD_NAMES_SAPSUCKER,
|
|
|
|
|
|
|
108 |
),
|
109 |
BirdSetConfig(
|
110 |
name="SSW_scape",
|
@@ -112,6 +129,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
112 |
citation=_SAPSUCKER_WOODS_CITATION,
|
113 |
data_dir=f"{base_url}/SSW",
|
114 |
class_list=BIRD_NAMES_SAPSUCKER,
|
|
|
|
|
|
|
115 |
),
|
116 |
BirdSetConfig(
|
117 |
name="PER",
|
@@ -119,6 +139,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
119 |
citation=_AMAZON_BASIN_CITATION,
|
120 |
data_dir=f"{base_url}/PER",
|
121 |
class_list=BIRD_NAMES_AMAZON_BASIN,
|
|
|
|
|
|
|
122 |
),
|
123 |
BirdSetConfig(
|
124 |
name="PER_xc",
|
@@ -126,6 +149,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
126 |
citation=_AMAZON_BASIN_CITATION,
|
127 |
data_dir=f"{base_url}/PER",
|
128 |
class_list=BIRD_NAMES_AMAZON_BASIN,
|
|
|
|
|
|
|
129 |
),
|
130 |
BirdSetConfig(
|
131 |
name="PER_scape",
|
@@ -133,6 +159,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
133 |
citation=_AMAZON_BASIN_CITATION,
|
134 |
data_dir=f"{base_url}/PER",
|
135 |
class_list=BIRD_NAMES_AMAZON_BASIN,
|
|
|
|
|
|
|
136 |
),
|
137 |
BirdSetConfig(
|
138 |
name="UHH",
|
@@ -140,6 +169,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
140 |
citation=_HAWAIIAN_ISLANDS_CITATION,
|
141 |
data_dir=f"{base_url}/UHH",
|
142 |
class_list=BIRD_NAMES_HAWAII,
|
|
|
|
|
|
|
143 |
),
|
144 |
BirdSetConfig(
|
145 |
name="UHH_xc",
|
@@ -147,6 +179,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
147 |
citation=_HAWAIIAN_ISLANDS_CITATION,
|
148 |
data_dir=f"{base_url}/UHH",
|
149 |
class_list=BIRD_NAMES_HAWAII,
|
|
|
|
|
|
|
150 |
),
|
151 |
BirdSetConfig(
|
152 |
name="UHH_scape",
|
@@ -154,6 +189,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
154 |
citation=_HAWAIIAN_ISLANDS_CITATION,
|
155 |
data_dir=f"{base_url}/UHH",
|
156 |
class_list=BIRD_NAMES_HAWAII,
|
|
|
|
|
|
|
157 |
),
|
158 |
BirdSetConfig(
|
159 |
name="SNE",
|
@@ -161,6 +199,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
161 |
citation=_SIERRA_NEVADA_CITATION,
|
162 |
data_dir=f"{base_url}/SNE",
|
163 |
class_list=BIRD_NAMES_SIERRA_NEVADA,
|
|
|
|
|
|
|
164 |
),
|
165 |
BirdSetConfig(
|
166 |
name="SNE_xc",
|
@@ -168,6 +209,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
168 |
citation=_SIERRA_NEVADA_CITATION,
|
169 |
data_dir=f"{base_url}/SNE",
|
170 |
class_list=BIRD_NAMES_SIERRA_NEVADA,
|
|
|
|
|
|
|
171 |
),
|
172 |
BirdSetConfig(
|
173 |
name="SNE_scape",
|
@@ -175,6 +219,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
175 |
citation=_SIERRA_NEVADA_CITATION,
|
176 |
data_dir=f"{base_url}/SNE",
|
177 |
class_list=BIRD_NAMES_SIERRA_NEVADA,
|
|
|
|
|
|
|
178 |
),
|
179 |
BirdSetConfig(
|
180 |
name="POW",
|
@@ -182,6 +229,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
182 |
citation=_POWDERMILL_NATURE_CITATION,
|
183 |
data_dir=f"{base_url}/POW",
|
184 |
class_list=BIRD_NAMES_POWDERMILL_NATURE,
|
|
|
|
|
|
|
185 |
),
|
186 |
BirdSetConfig(
|
187 |
name="POW_xc",
|
@@ -189,6 +239,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
189 |
citation=_POWDERMILL_NATURE_CITATION,
|
190 |
data_dir=f"{base_url}/POW",
|
191 |
class_list=BIRD_NAMES_POWDERMILL_NATURE,
|
|
|
|
|
|
|
192 |
),
|
193 |
BirdSetConfig(
|
194 |
name="POW_scape",
|
@@ -196,6 +249,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
196 |
citation=_POWDERMILL_NATURE_CITATION,
|
197 |
data_dir=f"{base_url}/POW",
|
198 |
class_list=BIRD_NAMES_POWDERMILL_NATURE,
|
|
|
|
|
|
|
199 |
),
|
200 |
BirdSetConfig(
|
201 |
name="HSN",
|
@@ -203,6 +259,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
203 |
citation=_HIGH_SIERRAS_CITATION,
|
204 |
data_dir=f"{base_url}/HSN",
|
205 |
class_list=BIRD_NAMES_HIGH_SIERRAS,
|
|
|
|
|
|
|
206 |
),
|
207 |
BirdSetConfig(
|
208 |
name="HSN_xc",
|
@@ -210,6 +269,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
210 |
citation=_HIGH_SIERRAS_CITATION,
|
211 |
data_dir=f"{base_url}/HSN",
|
212 |
class_list=BIRD_NAMES_HIGH_SIERRAS,
|
|
|
|
|
|
|
213 |
),
|
214 |
BirdSetConfig(
|
215 |
name="HSN_scape",
|
@@ -217,6 +279,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
217 |
citation=_HIGH_SIERRAS_CITATION,
|
218 |
data_dir=f"{base_url}/HSN",
|
219 |
class_list=BIRD_NAMES_HIGH_SIERRAS,
|
|
|
|
|
|
|
220 |
),
|
221 |
BirdSetConfig(
|
222 |
name="NES",
|
@@ -224,6 +289,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
224 |
citation=_COLUMBIA_COSTA_RICA_CITATION,
|
225 |
data_dir=f"{base_url}/NES",
|
226 |
class_list=BIRD_NAMES_COLUMBIA_COSTA_RICA,
|
|
|
|
|
|
|
227 |
),
|
228 |
BirdSetConfig(
|
229 |
name="NES_xc",
|
@@ -231,6 +299,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
231 |
citation=_COLUMBIA_COSTA_RICA_CITATION,
|
232 |
data_dir=f"{base_url}/NES",
|
233 |
class_list=BIRD_NAMES_COLUMBIA_COSTA_RICA,
|
|
|
|
|
|
|
234 |
),
|
235 |
BirdSetConfig(
|
236 |
name="NES_scape",
|
@@ -238,6 +309,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
238 |
citation=_COLUMBIA_COSTA_RICA_CITATION,
|
239 |
data_dir=f"{base_url}/NES",
|
240 |
class_list=BIRD_NAMES_COLUMBIA_COSTA_RICA,
|
|
|
|
|
|
|
241 |
),
|
242 |
BirdSetConfig(
|
243 |
name="NBP",
|
@@ -245,6 +319,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
245 |
citation=_NIPS4BPLUS_CITATION,
|
246 |
data_dir=f"{base_url}/NBP",
|
247 |
class_list=BIRD_NAMES_NIPS4BPLUS,
|
|
|
|
|
|
|
248 |
),
|
249 |
BirdSetConfig(
|
250 |
name="NBP_xc",
|
@@ -252,6 +329,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
252 |
citation=_NIPS4BPLUS_CITATION,
|
253 |
data_dir=f"{base_url}/NBP",
|
254 |
class_list=BIRD_NAMES_NIPS4BPLUS,
|
|
|
|
|
|
|
255 |
),
|
256 |
BirdSetConfig(
|
257 |
name="NBP_scape",
|
@@ -259,6 +339,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
259 |
citation=_NIPS4BPLUS_CITATION,
|
260 |
data_dir=f"{base_url}/NBP",
|
261 |
class_list=BIRD_NAMES_NIPS4BPLUS,
|
|
|
|
|
|
|
262 |
),
|
263 |
BirdSetConfig(
|
264 |
name="XCM",
|
@@ -266,6 +349,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
266 |
citation="TODO",
|
267 |
data_dir=f"{base_url}/XCM",
|
268 |
class_list=BIRD_NAMES_XENOCANTO_M,
|
|
|
|
|
|
|
269 |
),
|
270 |
BirdSetConfig(
|
271 |
name="XCL",
|
@@ -273,6 +359,9 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
273 |
citation="TODO",
|
274 |
data_dir=f"{base_url}/XCL",
|
275 |
class_list=BIRD_NAMES_XENOCANTO,
|
|
|
|
|
|
|
276 |
),
|
277 |
]
|
278 |
|
@@ -445,7 +534,6 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
445 |
"low_freq": row["low_freq"],
|
446 |
"high_freq": row["high_freq"],
|
447 |
"ebird_code": row["ebird_code"] if split != "test_multilabel" else None,
|
448 |
-
#"ebird_code_multilabel": row.get("ebird_code_multilabel", None),
|
449 |
"ebird_code_multilabel": row.get("ebird_code_multilabel", None) if "no_call" not in row.get("ebird_code_multilabel", []) else [],
|
450 |
"ebird_code_secondary": row.get("ebird_code_secondary", None),
|
451 |
"call_type": row["call_type"],
|
@@ -461,5 +549,11 @@ class BirdSet(datasets.GeneratorBasedBuilder):
|
|
461 |
"event_cluster": row.get("event_cluster", None),
|
462 |
"peaks": row.get("peaks", None),
|
463 |
"quality": row.get("quality", None),
|
464 |
-
"recordist": row.get("recordist", None)
|
|
|
|
|
|
|
|
|
|
|
|
|
465 |
}
|
|
|
22 |
BIRD_NAMES_HIGH_SIERRAS, BIRD_NAMES_SIERRA_NEVADA, BIRD_NAMES_POWDERMILL_NATURE, BIRD_NAMES_SAPSUCKER, \
|
23 |
BIRD_NAMES_COLUMBIA_COSTA_RICA, BIRD_NAMES_XENOCANTO, BIRD_NAMES_XENOCANTO_M
|
24 |
|
25 |
+
from . import classes
|
26 |
+
|
27 |
from .descriptions import _BIRD_DB_CITATION, _NIPS4BPLUS_CITATION, _NIPS4BPLUS_DESCRIPTION, \
|
28 |
_HIGH_SIERRAS_DESCRIPTION, _HIGH_SIERRAS_CITATION, _SIERRA_NEVADA_DESCRIPTION, _SIERRA_NEVADA_CITATION, \
|
29 |
_POWDERMILL_NATURE_DESCRIPTION, _POWDERMILL_NATURE_CITATION, _AMAZON_BASIN_DESCRIPTION, _AMAZON_BASIN_CITATION, \
|
|
|
32 |
|
33 |
#############################################
|
34 |
_BIRDSET_CITATION = """\
|
35 |
+
@article{birdset,
|
36 |
title = {BirdSet: A Multi-Task Benchmark For Avian Diversity Monitoring},
|
37 |
+
author={anonymous},
|
38 |
year={2024}
|
39 |
}
|
40 |
"""
|
|
|
46 |
contained dataset.
|
47 |
"""
|
48 |
|
49 |
+
base_url = "https://huggingface.co/datasets/anonymous-birder/BirdSet/resolve/data"
|
50 |
+
base_url = "/mnt/work/bird2vec/data/huggingface_hub/gadme/data"
|
51 |
|
52 |
class BirdSetConfig(datasets.BuilderConfig):
|
53 |
def __init__(
|
|
|
55 |
name,
|
56 |
citation,
|
57 |
class_list,
|
58 |
+
genus_list,
|
59 |
+
species_group_list,
|
60 |
+
order_list,
|
61 |
**kwargs):
|
62 |
super().__init__(version=datasets.Version("0.0.2"), name=name, **kwargs)
|
63 |
|
|
|
85 |
"peaks": datasets.Sequence(datasets.Value("float64")),
|
86 |
"quality": datasets.Value("string"),
|
87 |
"recordist": datasets.Value("string"),
|
88 |
+
"genus": datasets.ClassLabel(names=genus_list),
|
89 |
+
"species_group": datasets.ClassLabel(names=species_group_list),
|
90 |
+
"order": datasets.ClassLabel(names=order_list),
|
91 |
+
"genus_multilabel": datasets.Sequence(datasets.ClassLabel(names=genus_list)),
|
92 |
+
"species_group_multilabel": datasets.Sequence(datasets.ClassLabel(names=species_group_list)),
|
93 |
+
"order_multilabel": datasets.Sequence(datasets.ClassLabel(names=order_list)),
|
94 |
})
|
95 |
|
96 |
self.features = features
|
|
|
109 |
citation=_SAPSUCKER_WOODS_CITATION,
|
110 |
data_dir=f"{base_url}/SSW",
|
111 |
class_list=BIRD_NAMES_SAPSUCKER,
|
112 |
+
genus_list=classes.GENUS_SSW,
|
113 |
+
species_group_list=classes.SPECIES_GROUP_SSW,
|
114 |
+
order_list=classes.ORDER_SSW,
|
115 |
),
|
116 |
BirdSetConfig(
|
117 |
name="SSW_xc",
|
|
|
119 |
citation=_SAPSUCKER_WOODS_CITATION,
|
120 |
data_dir=f"{base_url}/SSW",
|
121 |
class_list=BIRD_NAMES_SAPSUCKER,
|
122 |
+
genus_list=classes.GENUS_SSW,
|
123 |
+
species_group_list=classes.SPECIES_GROUP_SSW,
|
124 |
+
order_list=classes.ORDER_SSW,
|
125 |
),
|
126 |
BirdSetConfig(
|
127 |
name="SSW_scape",
|
|
|
129 |
citation=_SAPSUCKER_WOODS_CITATION,
|
130 |
data_dir=f"{base_url}/SSW",
|
131 |
class_list=BIRD_NAMES_SAPSUCKER,
|
132 |
+
genus_list=classes.GENUS_SSW,
|
133 |
+
species_group_list=classes.SPECIES_GROUP_SSW,
|
134 |
+
order_list=classes.ORDER_SSW,
|
135 |
),
|
136 |
BirdSetConfig(
|
137 |
name="PER",
|
|
|
139 |
citation=_AMAZON_BASIN_CITATION,
|
140 |
data_dir=f"{base_url}/PER",
|
141 |
class_list=BIRD_NAMES_AMAZON_BASIN,
|
142 |
+
genus_list=classes.GENUS_PER,
|
143 |
+
species_group_list=classes.SPECIES_GROUP_PER,
|
144 |
+
order_list=classes.ORDER_PER,
|
145 |
),
|
146 |
BirdSetConfig(
|
147 |
name="PER_xc",
|
|
|
149 |
citation=_AMAZON_BASIN_CITATION,
|
150 |
data_dir=f"{base_url}/PER",
|
151 |
class_list=BIRD_NAMES_AMAZON_BASIN,
|
152 |
+
genus_list=classes.GENUS_PER,
|
153 |
+
species_group_list=classes.SPECIES_GROUP_PER,
|
154 |
+
order_list=classes.ORDER_PER,
|
155 |
),
|
156 |
BirdSetConfig(
|
157 |
name="PER_scape",
|
|
|
159 |
citation=_AMAZON_BASIN_CITATION,
|
160 |
data_dir=f"{base_url}/PER",
|
161 |
class_list=BIRD_NAMES_AMAZON_BASIN,
|
162 |
+
genus_list=classes.GENUS_PER,
|
163 |
+
species_group_list=classes.SPECIES_GROUP_PER,
|
164 |
+
order_list=classes.ORDER_PER,
|
165 |
),
|
166 |
BirdSetConfig(
|
167 |
name="UHH",
|
|
|
169 |
citation=_HAWAIIAN_ISLANDS_CITATION,
|
170 |
data_dir=f"{base_url}/UHH",
|
171 |
class_list=BIRD_NAMES_HAWAII,
|
172 |
+
genus_list=classes.GENUS_UHH,
|
173 |
+
species_group_list=classes.SPECIES_GROUP_UHH,
|
174 |
+
order_list=classes.ORDER_UHH,
|
175 |
),
|
176 |
BirdSetConfig(
|
177 |
name="UHH_xc",
|
|
|
179 |
citation=_HAWAIIAN_ISLANDS_CITATION,
|
180 |
data_dir=f"{base_url}/UHH",
|
181 |
class_list=BIRD_NAMES_HAWAII,
|
182 |
+
genus_list=classes.GENUS_UHH,
|
183 |
+
species_group_list=classes.SPECIES_GROUP_UHH,
|
184 |
+
order_list=classes.ORDER_UHH,
|
185 |
),
|
186 |
BirdSetConfig(
|
187 |
name="UHH_scape",
|
|
|
189 |
citation=_HAWAIIAN_ISLANDS_CITATION,
|
190 |
data_dir=f"{base_url}/UHH",
|
191 |
class_list=BIRD_NAMES_HAWAII,
|
192 |
+
genus_list=classes.GENUS_UHH,
|
193 |
+
species_group_list=classes.SPECIES_GROUP_UHH,
|
194 |
+
order_list=classes.ORDER_UHH,
|
195 |
),
|
196 |
BirdSetConfig(
|
197 |
name="SNE",
|
|
|
199 |
citation=_SIERRA_NEVADA_CITATION,
|
200 |
data_dir=f"{base_url}/SNE",
|
201 |
class_list=BIRD_NAMES_SIERRA_NEVADA,
|
202 |
+
genus_list=classes.GENUS_SNE,
|
203 |
+
species_group_list=classes.SPECIES_GROUP_SNE,
|
204 |
+
order_list=classes.ORDER_SNE,
|
205 |
),
|
206 |
BirdSetConfig(
|
207 |
name="SNE_xc",
|
|
|
209 |
citation=_SIERRA_NEVADA_CITATION,
|
210 |
data_dir=f"{base_url}/SNE",
|
211 |
class_list=BIRD_NAMES_SIERRA_NEVADA,
|
212 |
+
genus_list=classes.GENUS_SNE,
|
213 |
+
species_group_list=classes.SPECIES_GROUP_SNE,
|
214 |
+
order_list=classes.ORDER_SNE,
|
215 |
),
|
216 |
BirdSetConfig(
|
217 |
name="SNE_scape",
|
|
|
219 |
citation=_SIERRA_NEVADA_CITATION,
|
220 |
data_dir=f"{base_url}/SNE",
|
221 |
class_list=BIRD_NAMES_SIERRA_NEVADA,
|
222 |
+
genus_list=classes.GENUS_SNE,
|
223 |
+
species_group_list=classes.SPECIES_GROUP_SNE,
|
224 |
+
order_list=classes.ORDER_SNE,
|
225 |
),
|
226 |
BirdSetConfig(
|
227 |
name="POW",
|
|
|
229 |
citation=_POWDERMILL_NATURE_CITATION,
|
230 |
data_dir=f"{base_url}/POW",
|
231 |
class_list=BIRD_NAMES_POWDERMILL_NATURE,
|
232 |
+
genus_list=classes.GENUS_POW,
|
233 |
+
species_group_list=classes.SPECIES_GROUP_POW,
|
234 |
+
order_list=classes.ORDER_POW,
|
235 |
),
|
236 |
BirdSetConfig(
|
237 |
name="POW_xc",
|
|
|
239 |
citation=_POWDERMILL_NATURE_CITATION,
|
240 |
data_dir=f"{base_url}/POW",
|
241 |
class_list=BIRD_NAMES_POWDERMILL_NATURE,
|
242 |
+
genus_list=classes.GENUS_POW,
|
243 |
+
species_group_list=classes.SPECIES_GROUP_POW,
|
244 |
+
order_list=classes.ORDER_POW,
|
245 |
),
|
246 |
BirdSetConfig(
|
247 |
name="POW_scape",
|
|
|
249 |
citation=_POWDERMILL_NATURE_CITATION,
|
250 |
data_dir=f"{base_url}/POW",
|
251 |
class_list=BIRD_NAMES_POWDERMILL_NATURE,
|
252 |
+
genus_list=classes.GENUS_POW,
|
253 |
+
species_group_list=classes.SPECIES_GROUP_POW,
|
254 |
+
order_list=classes.ORDER_POW,
|
255 |
),
|
256 |
BirdSetConfig(
|
257 |
name="HSN",
|
|
|
259 |
citation=_HIGH_SIERRAS_CITATION,
|
260 |
data_dir=f"{base_url}/HSN",
|
261 |
class_list=BIRD_NAMES_HIGH_SIERRAS,
|
262 |
+
genus_list=classes.GENUS_HSN,
|
263 |
+
species_group_list=classes.SPECIES_GROUP_HSN,
|
264 |
+
order_list=classes.ORDER_HSN,
|
265 |
),
|
266 |
BirdSetConfig(
|
267 |
name="HSN_xc",
|
|
|
269 |
citation=_HIGH_SIERRAS_CITATION,
|
270 |
data_dir=f"{base_url}/HSN",
|
271 |
class_list=BIRD_NAMES_HIGH_SIERRAS,
|
272 |
+
genus_list=classes.GENUS_HSN,
|
273 |
+
species_group_list=classes.SPECIES_GROUP_HSN,
|
274 |
+
order_list=classes.ORDER_HSN,
|
275 |
),
|
276 |
BirdSetConfig(
|
277 |
name="HSN_scape",
|
|
|
279 |
citation=_HIGH_SIERRAS_CITATION,
|
280 |
data_dir=f"{base_url}/HSN",
|
281 |
class_list=BIRD_NAMES_HIGH_SIERRAS,
|
282 |
+
genus_list=classes.GENUS_HSN,
|
283 |
+
species_group_list=classes.SPECIES_GROUP_HSN,
|
284 |
+
order_list=classes.ORDER_HSN,
|
285 |
),
|
286 |
BirdSetConfig(
|
287 |
name="NES",
|
|
|
289 |
citation=_COLUMBIA_COSTA_RICA_CITATION,
|
290 |
data_dir=f"{base_url}/NES",
|
291 |
class_list=BIRD_NAMES_COLUMBIA_COSTA_RICA,
|
292 |
+
genus_list=classes.GENUS_NES,
|
293 |
+
species_group_list=classes.SPECIES_GROUP_NES,
|
294 |
+
order_list=classes.ORDER_NES,
|
295 |
),
|
296 |
BirdSetConfig(
|
297 |
name="NES_xc",
|
|
|
299 |
citation=_COLUMBIA_COSTA_RICA_CITATION,
|
300 |
data_dir=f"{base_url}/NES",
|
301 |
class_list=BIRD_NAMES_COLUMBIA_COSTA_RICA,
|
302 |
+
genus_list=classes.GENUS_NES,
|
303 |
+
species_group_list=classes.SPECIES_GROUP_NES,
|
304 |
+
order_list=classes.ORDER_NES,
|
305 |
),
|
306 |
BirdSetConfig(
|
307 |
name="NES_scape",
|
|
|
309 |
citation=_COLUMBIA_COSTA_RICA_CITATION,
|
310 |
data_dir=f"{base_url}/NES",
|
311 |
class_list=BIRD_NAMES_COLUMBIA_COSTA_RICA,
|
312 |
+
genus_list=classes.GENUS_NES,
|
313 |
+
species_group_list=classes.SPECIES_GROUP_NES,
|
314 |
+
order_list=classes.ORDER_NES,
|
315 |
),
|
316 |
BirdSetConfig(
|
317 |
name="NBP",
|
|
|
319 |
citation=_NIPS4BPLUS_CITATION,
|
320 |
data_dir=f"{base_url}/NBP",
|
321 |
class_list=BIRD_NAMES_NIPS4BPLUS,
|
322 |
+
genus_list=classes.GENUS_NBP,
|
323 |
+
species_group_list=classes.SPECIES_GROUP_NBP,
|
324 |
+
order_list=classes.ORDER_NBP,
|
325 |
),
|
326 |
BirdSetConfig(
|
327 |
name="NBP_xc",
|
|
|
329 |
citation=_NIPS4BPLUS_CITATION,
|
330 |
data_dir=f"{base_url}/NBP",
|
331 |
class_list=BIRD_NAMES_NIPS4BPLUS,
|
332 |
+
genus_list=classes.GENUS_NBP,
|
333 |
+
species_group_list=classes.SPECIES_GROUP_NBP,
|
334 |
+
order_list=classes.ORDER_NBP,
|
335 |
),
|
336 |
BirdSetConfig(
|
337 |
name="NBP_scape",
|
|
|
339 |
citation=_NIPS4BPLUS_CITATION,
|
340 |
data_dir=f"{base_url}/NBP",
|
341 |
class_list=BIRD_NAMES_NIPS4BPLUS,
|
342 |
+
genus_list=classes.GENUS_NBP,
|
343 |
+
species_group_list=classes.SPECIES_GROUP_NBP,
|
344 |
+
order_list=classes.ORDER_NBP,
|
345 |
),
|
346 |
BirdSetConfig(
|
347 |
name="XCM",
|
|
|
349 |
citation="TODO",
|
350 |
data_dir=f"{base_url}/XCM",
|
351 |
class_list=BIRD_NAMES_XENOCANTO_M,
|
352 |
+
genus_list=classes.GENUS_XCM,
|
353 |
+
species_group_list=classes.SPECIES_GROUP_XCM,
|
354 |
+
order_list=classes.ORDER_XCM,
|
355 |
),
|
356 |
BirdSetConfig(
|
357 |
name="XCL",
|
|
|
359 |
citation="TODO",
|
360 |
data_dir=f"{base_url}/XCL",
|
361 |
class_list=BIRD_NAMES_XENOCANTO,
|
362 |
+
genus_list=classes.GENUS_XCL,
|
363 |
+
species_group_list=classes.SPECIES_GROUP_XCL,
|
364 |
+
order_list=classes.ORDER_XCL,
|
365 |
),
|
366 |
]
|
367 |
|
|
|
534 |
"low_freq": row["low_freq"],
|
535 |
"high_freq": row["high_freq"],
|
536 |
"ebird_code": row["ebird_code"] if split != "test_multilabel" else None,
|
|
|
537 |
"ebird_code_multilabel": row.get("ebird_code_multilabel", None) if "no_call" not in row.get("ebird_code_multilabel", []) else [],
|
538 |
"ebird_code_secondary": row.get("ebird_code_secondary", None),
|
539 |
"call_type": row["call_type"],
|
|
|
549 |
"event_cluster": row.get("event_cluster", None),
|
550 |
"peaks": row.get("peaks", None),
|
551 |
"quality": row.get("quality", None),
|
552 |
+
"recordist": row.get("recordist", None),
|
553 |
+
"genus": row["genus"] if split != "test_multilabel" else None,
|
554 |
+
"species_group": row["species_group"] if split != "test_multilabel" else None,
|
555 |
+
"order": row["order"] if split != "test_multilabel" else None,
|
556 |
+
"genus_multilabel": row.get("genus_multilabel", []) if split == "test_multilabel" else None,
|
557 |
+
"species_group_multilabel": row.get("species_group_multilabel", []) if split == "test_multilabel" else None,
|
558 |
+
"order_multilabel": row.get("order_multilabel", []) if split == "test_multilabel" else None,
|
559 |
}
|