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README.md
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@@ -19,10 +19,12 @@ The dataset utilized in the pre-training of the AVS-Net: Attention-based Variabl
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The dataset is structured on a slice-by-slice basis, with each slice containing 20 cases. Each case is comprised of two files: rawdata*.mat and espirit*.mat. The dataset's structure can be outlined as follows:
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## Dataset: /rds/projects/d/duanj-ai-in-medical-imaging/knee_nyu
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### Protocol: [coronal_pd, coronal_pd_fs, sagittal_pd, sagittal_t2, axial_t2]
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Dataset architecture:
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Approximately 40 slices per protocol, each slice containing 15 channels, with a height and width (HW) of (640, 368)
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```
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- espirit*.mat(1-40), rawdata*.mat(1-40) *_masks.mat
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```
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In this structure, each protocol has approximately 40 slices, each consisting of 15 channels. The dimensions of the data are 640x368 (height x width). For each protocol, the slices are further divided into two groups: the training set ([train]) and the validation set ([val]). The training set includes the espirit*.mat and rawdata*.mat files for each slice, while the validation set contains *_masks.mat files.
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The dataset is structured on a slice-by-slice basis, with each slice containing 20 cases. Each case is comprised of two files: rawdata*.mat and espirit*.mat. The dataset's structure can be outlined as follows:
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## Dataset architecture:
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- name: /rds/projects/d/duanj-ai-in-medical-imaging/knee_fast_mri
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- Protocol: [coronal_pd, coronal_pd_fs, sagittal_pd, sagittal_t2, axial_t2]
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Approximately 40 slices per protocol, each slice containing 15 channels, with a height and width (HW) of (640, 368)
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```
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- espirit*.mat(1-40), rawdata*.mat(1-40) *_masks.mat
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```
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In this structure, each protocol has approximately 40 slices, each consisting of 15 channels. The dimensions of the data are 640x368 (height x width). For each protocol, the slices are further divided into two groups: the training set ([train]) and the validation set ([val]). The training set includes the espirit*.mat and rawdata*.mat files for each slice, while the validation set contains *_masks.mat files.
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## Dataset Usage
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> For a standalone knee dataset download, use `git lfs`(<https://git-lfs.com/>) to download from the `huggingface` datasets(<https://huggingface.co/datasets/AVS-Net/knee_coronal_pd>):
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```bash
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# Make sure you have git-lfs installed (https://git-lfs.com)
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git lfs install
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git clone -j8 [email protected]:datasets/AVS-Net/knee_fast_mri
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```
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