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Geneformer

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Geneformer / examples

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History: 38 commits

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Create multi-task_cell_classification.ipynb (#418)

b138ba5 verified about 2 months ago

pretraining_new_model
precommit formatting 3 months ago
cell_classification.ipynb

106 kB

add option for hyperparameter tuning to cc.validate 7 months ago
extract_and_plot_cell_embeddings.ipynb

1.13 MB

Add classifier module and examples 8 months ago
gene_classification.ipynb

180 kB

Add classifier module and examples 8 months ago
in_silico_perturbation.ipynb

5.06 kB

Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp 12 months ago
multitask_cell_classification.ipynb

13.8 kB

Create multi-task_cell_classification.ipynb (#418) about 2 months ago
tokenizing_scRNAseq_data.ipynb

4.01 kB

add input size tip to instructions about 2 months ago