Geneformer / geneformer

14 contributors

History: 98 commits

ctheodoris

delete old gene name dict

817eca2 verified 3 months ago

__init__.py

973 Bytes

Add function for summing of Ensembl IDs (#377) 3 months ago
classifier.py

60.7 kB

move dicts to init 4 months ago
classifier_utils.py

16.7 kB

save pval 4 months ago
collator_for_classification.py

29.9 kB

move dicts to init 4 months ago
emb_extractor.py

31.5 kB

move dicts to init 4 months ago
ensembl_mapping_dict_gc95M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
3.96 MB
LFS

Add function for summing of Ensembl IDs (#377) 3 months ago
evaluation_utils.py

9.75 kB

move dicts to init 4 months ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card about 2 years ago
gene_median_dictionary_gc95M.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
1.51 MB
LFS

Add function for summing of Ensembl IDs (#377) 3 months ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) over 1 year ago
gene_name_id_dict_gc95m.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
2.04 MB
LFS

update to only have gene names as keys in gene_name_id_dict 3 months ago
in_silico_perturber.py

39.2 kB

add typing list import 4 months ago
in_silico_perturber_stats.py

44.1 kB

move dicts to init 4 months ago
perturber_utils.py

26.8 kB

move dicts to init 4 months ago
pretrainer.py

37.1 kB

move dicts to init 4 months ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 1 year ago
token_dictionary_gc95M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
426 kB

Add function for summing of Ensembl IDs (#377) 3 months ago
tokenizer.py

25.4 kB

Add function for summing of Ensembl IDs (#377) 3 months ago

Pickle imports

Detected Pickle imports (2)

Detected Pickle imports (2)

Pickle imports

Pickle imports

Detected Pickle imports (2)

Pickle imports