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Geneformer

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Geneformer / geneformer

14 contributors

History: 35 commits

Christina Theodoris

Add sorting for aggregating data for goal state shifts

50e921d over 1 year ago

__init__.py

518 Bytes

Subclass collator for cell classification over 1 year ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification over 1 year ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card about 2 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) over 1 year ago
in_silico_perturber.py

56.4 kB

Fix min_genes to be >= tokens to perturb as a group over 1 year ago
in_silico_perturber_stats.py

31.1 kB

Add sorting for aggregating data for goal state shifts over 1 year ago
pretrainer.py

37 kB

Update pretrainer for transformers==4.28.0 over 1 year ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 1 year ago
tokenizer.py

8.98 kB

Update tokenizer to allow tokenization without custom cell attributes over 1 year ago