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Geneformer

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Geneformer / geneformer

14 contributors

History: 100 commits

hchen725's picture

Filter gene mapping dict for items that exist in gene_token_dict

1e8d481 verified 3 months ago

__init__.py

982 Bytes

Add init for ensembl mapping dict 3 months ago
classifier.py

60.7 kB

move dicts to init 4 months ago
classifier_utils.py

16.7 kB

save pval 4 months ago
collator_for_classification.py

29.9 kB

move dicts to init 4 months ago
emb_extractor.py

31.5 kB

move dicts to init 4 months ago
ensembl_mapping_dict_gc95M.pickle
Pickle imports
- No problematic imports detected
What is a pickle import?
3.96 MB
LFS

Upload ensembl_mapping_dict_gc95M.pickle 3 months ago
evaluation_utils.py

9.75 kB

move dicts to init 4 months ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card about 2 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) over 1 year ago
in_silico_perturber.py

39.2 kB

add typing list import 4 months ago
in_silico_perturber_stats.py

44.1 kB

move dicts to init 4 months ago
perturber_utils.py

26.8 kB

move dicts to init 4 months ago
pretrainer.py

37.1 kB

move dicts to init 4 months ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 1 year ago
tokenizer.py

25.4 kB

Filter gene mapping dict for items that exist in gene_token_dict 3 months ago