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Geneformer

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Geneformer / geneformer

14 contributors

History: 9 commits

Christina Theodoris

add in silico perturbation module

efec1c4 over 1 year ago

__init__.py

580 Bytes

add in silico perturbation module over 1 year ago
collator_for_cell_classification.py

28.8 kB

Add data collator for cell classification and example for cell classification about 2 years ago
collator_for_gene_classification.py

28.1 kB

Add data collator for gene classification and example for gene classification almost 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card about 2 years ago
gene_name_id_dict.pkl

2.48 MB
LFS

Add gene name : Ensembl ID dictionary over 1 year ago
in_silico_perturber.py

38.2 kB

add in silico perturbation module over 1 year ago
in_silico_perturber_stats.py

12.8 kB

add in silico perturbation module over 1 year ago
pretrainer.py

36.8 kB

add in silico perturbation module over 1 year ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 1 year ago
tokenizer.py

7.89 kB

Fix bug with metadata when processing multiple .loom files (#3) over 1 year ago