Geneformer / examples /tokenizing_scRNAseq_data.ipynb

Commit History

Rename loom tokenizer function and modify example notebook for adata.
4fdb850

Christina Theodoris commited on

Added anndata tokenizer and switched to Dataset.from_generator
b6ca566

ricomnl commited on

Add instructions to convert gene annotations w/ Ensembl Biomart
77eb432

Christina Theodoris commited on

Add further explanation regarding input file format for transcriptome tokenizer
c34ead6

Christina Theodoris commited on

Update instructions in tokenizing example to clarify requirement for Ensembl ID
d468697

Christina Theodoris commited on

Update instructions in tokenizing example to clarify requirement for Ensembl ID
e606e1c

Christina Theodoris commited on

Add further explanation to tokenizer example script and updated tokenizer to match loompy raised error
78dd83b

Christina Theodoris commited on

Add example for tokenizing .loom dataset
f89f796

Christina Theodoris commited on