Commit History

Prepare data cell level pass cell state dict instead of genes (#483)
69e6887
verified

ctheodoris hchen725 commited on

ensure gene class dict only inverted when using gene classifier
54b408b

Christina Theodoris commited on

make plot roc compatible with eval-only metrics
ae4867d

Christina Theodoris commited on

Merge remote-tracking branch 'origin/main'
5760b30

Christina Theodoris commited on

fix gene class dict labeling
bfcada4

Christina Theodoris commited on

Fix how mappings and train and val data are returned (#473)
c81f6f9
verified

ctheodoris hchen725 commited on

Add checks for custom attributes and n_counts prior to sum ensembl id (#461)
09de197
verified

ctheodoris hchen725 commited on

further emphasize different token dictionaries in examples
e2ee685

Christina Theodoris commited on

remove unused imports while no longer using distributed sampler
b9028ba
verified

ctheodoris commited on

update isp default mode to cls
0c99403
verified

ctheodoris commited on

update transformers version to match pretrainer using accelerate
3d62bb9
verified

ctheodoris commited on

update pretrainer to not use distributed sampler (Trainer uses accelerate)
8140c51
verified

ctheodoris commited on

update function for N_Detections for mixture_model without anchor_token
df297bc

Christina Theodoris commited on

add check to ensure emb_label is None for getting state embs dict
39b4444

Christina Theodoris commited on

change default emb to cls
9ee140a
verified

ctheodoris commited on

include install time in model card
21d36cd
verified

ctheodoris commited on

CUDA kernels incompatible with standard PyTorch device movement with 4bit/8bit, necessitating device-specific handling (#416)
b6d28c3
verified

ctheodoris madhavanvenkatesh commited on

move dict loading to function in eval utils
57bc17e

ctheodoris commited on

edit doc formatting
fce3f6e

ctheodoris commited on

edit docs formatting
ef094b2

ctheodoris commited on

add mtl_classifier to docs
bedb3b7

ctheodoris commited on

add input size tip to instructions
2732369
verified

ctheodoris commited on

update tokenizer to defaults for 95M models for special token and input size
da8cf3d
verified

ctheodoris commited on

update instructions to include reminder about token dictionary
cb1b0d5
verified

ctheodoris commited on

sync token_dictionary variable name w/ classifier
a021deb
verified

ctheodoris commited on

update setup with req and manifest with updated filenames
a34fbc2

ctheodoris commited on

fix imports mtl/eval_utils
eab1878

ctheodoris commited on

allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (#390)
47e0ef8
verified

ctheodoris madhavanvenkatesh commited on

comment out "def save_model_without_heads(original_model_save_directory)"; redundant for ISP/Emb extractor (#382)
22bf20f
verified

ctheodoris madhavanvenkatesh commited on

fixed bug related to dynamic ranges in dictionary with 'min' and 'max' value mismatch in optuna suggest fn (#380)
fe1640b
verified

ctheodoris madhavanvenkatesh commited on

Update README.md
11bcee7
verified

ctheodoris commited on