Commit History
move dicts to init
ea428cb
ctheodoris
commited on
update tokenizer to include eos token
ead0550
Christina Theodoris
commited on
fix cell state gene embeddings bug (#345)
c0e7b19
verified
ctheodoris
commited on
patch datasets save_to_disk
75c67a1
Christina Theodoris
commited on
correct typo
5a43832
verified
ctheodoris
commited on
Update readthedocs for classifier
f75f5ac
Christina Theodoris
commited on
Get the gene keys and gene list keys from the token dictionary instead of medians (#304)
b294421
verified
Add classifier module and examples
9e9cca9
Christina Theodoris
commited on
Fix typo (#301)
075bd53
verified
Add option for variable input_size and to add CLS/SEP Tokens (#299)
aa25cd2
verified
edit docstring format to highlight options
e3330a6
Christina Theodoris
commited on
change doc formatting
17f036a
Christina Theodoris
commited on
add sphinx docs
2a0dcbe
Christina Theodoris
commited on
Add option for modified batch size for loom tokenizer
0960cf6
Christina Theodoris
commited on
Add option for modifying chunk size for anndata tokenizer
fd93ebf
Christina Theodoris
commited on
tokenizer-uncropped-input_ids (#275)
8df5dc1
anndata_tokenizer (#170)
4302f48
Add error for no files found and suppress loompy import warning
abdf980
Christina Theodoris
commited on
Update tokenizer to allow tokenization without custom cell attributes
57b9778
Christina Theodoris
commited on
Modify tokenizer to allow renaming attr names btwn loom and .dataset
e78c44d
Christina Theodoris
commited on
Add further explanation regarding input file format for transcriptome tokenizer
c34ead6
Christina Theodoris
commited on
Add further explanation to tokenizer example script and updated tokenizer to match loompy raised error
78dd83b
Christina Theodoris
commited on
Fix bug with metadata when processing multiple .loom files (#3)
044d737
Add data collator for cell classification and example for cell classification
088ea6e
Christina Theodoris
commited on
Add Geneformer tokenizer and updated model card
5426788
Christina Theodoris
commited on