ctheodoris
commited on
Commit
•
3fe35ba
1
Parent(s):
2e64874
update refs to get_model_emb_dims
Browse files
geneformer/emb_extractor.py
CHANGED
@@ -622,13 +622,13 @@ class EmbExtractor:
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if self.exact_summary_stat == "exact_mean":
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embs = embs.mean(dim=0)
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-
emb_dims = pu.
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embs_df = pd.DataFrame(
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embs_df[0:emb_dims-1].mean(axis="rows"), columns=[self.exact_summary_stat]
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).T
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elif self.exact_summary_stat == "exact_median":
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embs = torch.median(embs, dim=0)[0]
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-
emb_dims = pu.
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embs_df = pd.DataFrame(
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embs_df[0:emb_dims-1].median(axis="rows"), columns=[self.exact_summary_stat]
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).T
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if self.exact_summary_stat == "exact_mean":
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embs = embs.mean(dim=0)
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+
emb_dims = pu.get_model_emb_dims(model)
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embs_df = pd.DataFrame(
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embs_df[0:emb_dims-1].mean(axis="rows"), columns=[self.exact_summary_stat]
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).T
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elif self.exact_summary_stat == "exact_median":
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embs = torch.median(embs, dim=0)[0]
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+
emb_dims = pu.get_model_emb_dims(model)
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embs_df = pd.DataFrame(
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embs_df[0:emb_dims-1].median(axis="rows"), columns=[self.exact_summary_stat]
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).T
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