Geneformer / geneformer /__init__.py
ctheodoris's picture
fix cell state gene embeddings bug (#345)
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# ruff: noqa: F401
from . import (
collator_for_classification,
emb_extractor,
in_silico_perturber,
in_silico_perturber_stats,
pretrainer,
tokenizer,
)
from .collator_for_classification import (
DataCollatorForCellClassification,
DataCollatorForGeneClassification,
)
from .emb_extractor import EmbExtractor, get_embs
from .in_silico_perturber import InSilicoPerturber
from .in_silico_perturber_stats import InSilicoPerturberStats
from .pretrainer import GeneformerPretrainer
from .tokenizer import TranscriptomeTokenizer
from . import classifier # noqa # isort:skip
from .classifier import Classifier # noqa # isort:skip