Geneformer / requirements.txt
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update with 12L and 20L i4096 gc95M models, multitask and quantiz code
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anndata>=0.9
datasets>=2.12
hyperopt>=0.2
loompy>=3.0
matplotlib>=3.7
numpy>=1.23
optuna>=3.6
optuna-integration>=3.6
packaging>=23.0
pandas>=2.0
pyarrow>=12.0
pytz>=2023.0
ray>=2.6
scanpy>=1.9
scikit_learn>=1.2
scipy>=1.10
seaborn>=0.12
setuptools>=65.6
statsmodels>=0.14
tdigest>=0.5.2
torch>=2.0.1
tqdm>=4.65
transformers>=4.28