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README.md

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+---
+license: apache-2.0
+datasets:
+- FreedomIntelligence/ApolloMoEDataset
+language:
+- ar
+- en
+- zh
+- ko
+- ja
+- mn
+- th
+- vi
+- lo
+- mg
+- de
+- pt
+- es
+- fr
+- ru
+- it
+- hr
+- gl
+- cs
+- co
+- la
+- uk
+- bs
+- bg
+- eo
+- sq
+- da
+- sa
+- gn
+- sr
+- sk
+- gd
+- lb
+- hi
+- ku
+- mt
+- he
+- ln
+- bm
+- sw
+- ig
+- rw
+- ha
+metrics:
+- accuracy
+base_model:
+- Qwen/Qwen2-7B
+pipeline_tag: question-answering
+tags:
+- biology
+- medical
+---
+# Democratizing Medical LLMs For Much More Languages
+
+Covering 12 Major Languages including English, Chinese, French, Hindi, Spanish, Arabic, Russian, Japanese, Korean, German, Italian, Portuguese and 38 Minor Languages So far.
+
+
+
+<p align="center">
+   📃 <a href="https://arxiv.org/abs/2410.10626" target="_blank">Paper</a> • 🌐 <a href="" target="_blank">Demo</a> • 🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloMoEDataset" target="_blank">ApolloMoEDataset</a> • 🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloMoEBench" target="_blank">ApolloMoEBench</a>  • 🤗 <a href="https://huggingface.co/collections/FreedomIntelligence/apollomoe-and-apollo2-670ddebe3bb1ba1aebabbf2c" target="_blank">Models</a>  •🌐 <a href="https://github.com/FreedomIntelligence/Apollo" target="_blank">Apollo</a>  • 🌐 <a href="https://github.com/FreedomIntelligence/ApolloMoE" target="_blank">ApolloMoE</a>
+</p>
+
+
+
+![Apollo](assets/apollo_medium_final.png)
+
+
+## 🌈 Update
+
+* **[2024.10.15]** ApolloMoE repo is published！🎉
+
+
+## Languages Coverage
+12 Major Languages and 38 Minor Languages
+
+<details>
+  <summary>Click to view the Languages Coverage</summary>
+   
+   ![ApolloMoE](assets/languages.png)
+
+</details>
+
+
+## Architecture
+
+<details>
+  <summary>Click to view the MoE routing image</summary>
+
+  ![ApolloMoE](assets/hybrid_routing.png)
+
+</details>
+
+## Results
+
+#### Dense
+   🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo2-0.5B" target="_blank">Apollo2-0.5B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo2-1.5B" target="_blank">Apollo2-1.5B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo2-2B" target="_blank">Apollo2-2B</a>  
+   
+   🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo2-3.8B" target="_blank">Apollo2-3.8B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo2-7B" target="_blank">Apollo2-7B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo2-9B" target="_blank">Apollo2-9B</a>  
+
+<details>
+  <summary>Click to view the Dense Models Results</summary>
+
+   ![ApolloMoE](assets/dense_results.png)
+
+</details>
+
+
+#### Post-MoE
+   🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-MoE-0.5B" target="_blank">Apollo-MoE-0.5B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-MoE-1.5B" target="_blank">Apollo-MoE-1.5B</a>  • 🤗 <a href="https://huggingface.co/FreedomIntelligence/Apollo-MoE-7B" target="_blank">Apollo-MoE-7B</a>  
+
+<details>
+  <summary>Click to view the Post-MoE Models Results</summary>
+
+   ![ApolloMoE](assets/post_moe_results.png)
+
+</details>
+
+   
+  
+
+## Usage Format
+##### Apollo2
+- 0.5B, 1.5B, 7B: User:{query}\nAssistant:{response}<|endoftext|>
+- 2B, 9B: User:{query}\nAssistant:{response}\<eos\>
+- 3.8B: <|user|>\n{query}<|end|><|assisitant|>\n{response}<|end|>
+
+##### Apollo-MoE
+- 0.5B, 1.5B, 7B: User:{query}\nAssistant:{response}<|endoftext|>
+  
+## Dataset & Evaluation
+
+- Dataset
+  🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloMoEDataset" target="_blank">ApolloMoEDataset</a>
+
+   <details><summary>Click to expand</summary>
+
+    ![ApolloMoE](assets/Dataset.png)
+
+    - [Data category](https://huggingface.co/datasets/FreedomIntelligence/ApolloCorpus/tree/main/train)
+
+
+   </details>
+
+- Evaluation
+  🤗 <a href="https://huggingface.co/datasets/FreedomIntelligence/ApolloMoEBench" target="_blank">ApolloMoEBench</a> 
+
+   <details><summary>Click to expand</summary>
+  
+     - EN:
+       - [MedQA-USMLE](https://huggingface.co/datasets/GBaker/MedQA-USMLE-4-options) 
+       - [MedMCQA](https://huggingface.co/datasets/medmcqa/viewer/default/test)
+       - [PubMedQA](https://huggingface.co/datasets/pubmed_qa): Because the results fluctuated too much, they were not used in the paper.
+       - [MMLU-Medical](https://huggingface.co/datasets/cais/mmlu)
+         - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - ZH:
+       - [MedQA-MCMLE](https://huggingface.co/datasets/bigbio/med_qa/viewer/med_qa_zh_4options_bigbio_qa/test)
+       - [CMB-single](https://huggingface.co/datasets/FreedomIntelligence/CMB): Not used in the paper
+         - Randomly sample 2,000 multiple-choice questions with single answer.
+       - [CMMLU-Medical](https://huggingface.co/datasets/haonan-li/cmmlu)
+         - Anatomy, Clinical_knowledge, College_medicine, Genetics, Nutrition, Traditional_chinese_medicine, Virology
+       - [CExam](https://github.com/williamliujl/CMExam): Not used in the paper
+         - Randomly sample 2,000 multiple-choice questions
+
+
+     - ES: [Head_qa](https://huggingface.co/datasets/head_qa)
+     - FR:
+       - [Frenchmedmcqa](https://github.com/qanastek/FrenchMedMCQA)
+       - [MMLU_FR]
+         - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - HI: [MMLU_HI](https://huggingface.co/datasets/FreedomIntelligence/MMLU_Hindi)
+        - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - AR: [MMLU_AR](https://huggingface.co/datasets/FreedomIntelligence/MMLU_Arabic)
+        - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - JA: [IgakuQA](https://github.com/jungokasai/IgakuQA)
+     - KO: [KorMedMCQA](https://huggingface.co/datasets/sean0042/KorMedMCQA)
+     - IT:
+       - [MedExpQA](https://huggingface.co/datasets/HiTZ/MedExpQA)
+       - [MMLU_IT]
+         - Clinical knowledge, Medical genetics, Anatomy, Professional medicine, College biology, College medicine
+     - DE: [BioInstructQA](https://huggingface.co/datasets/BioMistral/BioInstructQA): German part
+     - PT: [BioInstructQA](https://huggingface.co/datasets/BioMistral/BioInstructQA): Portuguese part
+     - RU: [RuMedBench](https://github.com/sb-ai-lab/MedBench)
+
+  
+
+
+   </details>
+
+
+## Results reproduction
+   <details><summary>Click to expand</summary>
+
+
+   We take Apollo2-7B or Apollo-MoE-0.5B as example
+   1. Download Dataset for project:
+
+      ```
+      bash 0.download_data.sh  
+      ```
+    
+   2. Prepare test and dev data for specific model:
+
+      
+      - Create test data for with special token
+        
+       ```
+       bash 1.data_process_test&dev.sh
+       ```
+    
+   3. Prepare train data for specific model (Create tokenized data in advance):
+
+    
+      - You can adjust data Training order and Training Epoch in this step
+
+       ```
+       bash 2.data_process_train.sh
+       ```
+    
+   4. Train the model
+
+    
+      - If you want to train in Multi Nodes please refer to ./src/sft/training_config/zero_multi.yaml
+
+
+       ```
+       bash 3.single_node_train.sh
+       ```
+
+
+   5. Evaluate your model: Generate score for benchmark
+      
+         ```
+         bash 4.eval.sh
+         ```
+
+   </details>
+
+
+
+##  Citation
+Please use the following citation if you intend to use our dataset for training or evaluation:
+
+```
+@misc{zheng2024efficientlydemocratizingmedicalllms,
+      title={Efficiently Democratizing Medical LLMs for 50 Languages via a Mixture of Language Family Experts}, 
+      author={Guorui Zheng and Xidong Wang and Juhao Liang and Nuo Chen and Yuping Zheng and Benyou Wang},
+      year={2024},
+      eprint={2410.10626},
+      archivePrefix={arXiv},
+      primaryClass={cs.CL},
+      url={https://arxiv.org/abs/2410.10626}, 
+}
+```
+

added_tokens.json

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+{
+  "<|endoftext|>": 151643,
+  "<|im_end|>": 151645,
+  "<|im_start|>": 151644
+}

config.json

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+{
+    "architectures": [
+        "Qwen2ForCausalLM"
+    ],
+    "attention_dropout": 0.0,
+    "bos_token_id": 151643,
+    "eos_token_id": 151643,
+    "hidden_act": "silu",
+    "hidden_size": 3584,
+    "initializer_range": 0.02,
+    "intermediate_size": 18944,
+    "max_position_embeddings": 131072,
+    "max_window_layers": 28,
+    "model_type": "qwen2",
+    "num_attention_heads": 28,
+    "num_hidden_layers": 28,
+    "num_key_value_heads": 4,
+    "rms_norm_eps": 1e-06,
+    "rope_theta": 1000000.0,
+    "sliding_window": null,
+    "tie_word_embeddings": false,
+    "torch_dtype": "bfloat16",
+    "transformers_version": "4.44.2",
+    "use_cache": true,
+    "use_sliding_window": false,
+    "vocab_size": 152064,
+    "quantization_config": {
+        "quant_method": "exl2",
+        "version": "0.2.3",
+        "bits": 4.0,
+        "head_bits": 6,
+        "calibration": {
+            "rows": 115,
+            "length": 2048,
+            "dataset": "(default)"
+        }
+    }
+}

generation_config.json

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+{
+  "bos_token_id": 151643,
+  "eos_token_id": 151643,
+  "max_new_tokens": 2048,
+  "transformers_version": "4.44.2"
+}

output.safetensors

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+size 4787725276

special_tokens_map.json

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+{
+  "additional_special_tokens": [
+    "<|im_start|>",
+    "<|im_end|>"
+  ],
+  "eos_token": {
+    "content": "<|endoftext|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "pad_token": {
+    "content": "<|endoftext|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

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+{
+  "add_prefix_space": false,
+  "added_tokens_decoder": {
+    "151643": {
+      "content": "<|endoftext|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "151644": {
+      "content": "<|im_start|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "151645": {
+      "content": "<|im_end|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "additional_special_tokens": [
+    "<|im_start|>",
+    "<|im_end|>"
+  ],
+  "bos_token": null,
+  "chat_template": "{% for message in messages %}{% if loop.first and messages[0]['role'] != 'system' %}{{ '<|im_start|>system\nYou are a helpful assistant<|im_end|>\n' }}{% endif %}{{'<|im_start|>' + message['role'] + '\n' + message['content'] + '<|im_end|>' + '\n'}}{% endfor %}{% if add_generation_prompt %}{{ '<|im_start|>assistant\n' }}{% endif %}",
+  "clean_up_tokenization_spaces": false,
+  "eos_token": "<|endoftext|>",
+  "errors": "replace",
+  "model_max_length": 32768,
+  "pad_token": "<|endoftext|>",
+  "padding_side": "left",
+  "split_special_tokens": false,
+  "tokenizer_class": "Qwen2Tokenizer",
+  "unk_token": null
+}