| /nfs/production/literature/amina-mardiyyah/envs/llm-prompt/lib/python3.11/site-packages/accelerate/accelerator.py:488: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead. | |
| self.scaler = torch.cuda.amp.GradScaler(**kwargs) | |
| Detected kernel version 4.18.0, which is below the recommended minimum of 5.5.0; this can cause the process to hang. It is recommended to upgrade the kernel to the minimum version or higher. | |
| [34m[1mwandb[39m[22m: [33mWARNING[39m The `run_name` is currently set to the same value as `TrainingArguments.output_dir`. If this was not intended, please specify a different run name by setting the `TrainingArguments.run_name` parameter. | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.73 0.81 0.77 2494 | |
| RNA 0.71 0.70 0.70 238 | |
| cell_line 0.73 0.78 0.76 1050 | |
| cell_type 0.63 0.75 0.69 775 | |
| protein 0.86 0.87 0.87 6196 | |
| micro avg 0.79 0.84 0.81 10753 | |
| macro avg 0.73 0.78 0.76 10753 | |
| weighted avg 0.80 0.84 0.82 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.78 0.80 0.79 2494 | |
| RNA 0.77 0.79 0.78 238 | |
| cell_line 0.77 0.80 0.78 1050 | |
| cell_type 0.66 0.77 0.71 775 | |
| protein 0.86 0.91 0.88 6196 | |
| micro avg 0.81 0.86 0.83 10753 | |
| macro avg 0.77 0.81 0.79 10753 | |
| weighted avg 0.81 0.86 0.84 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.74 0.87 0.80 2494 | |
| RNA 0.78 0.87 0.82 238 | |
| cell_line 0.80 0.80 0.80 1050 | |
| cell_type 0.68 0.77 0.72 775 | |
| protein 0.88 0.89 0.88 6196 | |
| micro avg 0.82 0.86 0.84 10753 | |
| macro avg 0.78 0.84 0.81 10753 | |
| weighted avg 0.82 0.86 0.84 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.78 0.81 0.80 2494 | |
| RNA 0.79 0.88 0.83 238 | |
| cell_line 0.80 0.81 0.81 1050 | |
| cell_type 0.68 0.79 0.73 775 | |
| protein 0.87 0.90 0.89 6196 | |
| micro avg 0.83 0.87 0.84 10753 | |
| macro avg 0.78 0.84 0.81 10753 | |
| weighted avg 0.83 0.87 0.85 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.77 0.85 0.81 2494 | |
| RNA 0.84 0.87 0.85 238 | |
| cell_line 0.81 0.84 0.82 1050 | |
| cell_type 0.74 0.78 0.76 775 | |
| protein 0.88 0.90 0.89 6196 | |
| micro avg 0.83 0.87 0.85 10753 | |
| macro avg 0.81 0.85 0.83 10753 | |
| weighted avg 0.84 0.87 0.85 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.79 0.83 0.81 2494 | |
| RNA 0.83 0.86 0.84 238 | |
| cell_line 0.80 0.83 0.81 1050 | |
| cell_type 0.71 0.78 0.74 775 | |
| protein 0.88 0.90 0.89 6196 | |
| micro avg 0.84 0.87 0.85 10753 | |
| macro avg 0.80 0.84 0.82 10753 | |
| weighted avg 0.84 0.87 0.85 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.78 0.84 0.81 2494 | |
| RNA 0.84 0.89 0.86 238 | |
| cell_line 0.81 0.86 0.83 1050 | |
| cell_type 0.73 0.80 0.76 775 | |
| protein 0.88 0.90 0.89 6196 | |
| micro avg 0.84 0.87 0.85 10753 | |
| macro avg 0.81 0.86 0.83 10753 | |
| weighted avg 0.84 0.87 0.85 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.78 0.83 0.81 2494 | |
| RNA 0.84 0.87 0.86 238 | |
| cell_line 0.81 0.86 0.83 1050 | |
| cell_type 0.75 0.79 0.77 775 | |
| protein 0.88 0.90 0.89 6196 | |
| micro avg 0.84 0.87 0.85 10753 | |
| macro avg 0.81 0.85 0.83 10753 | |
| weighted avg 0.84 0.87 0.85 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.78 0.84 0.81 2494 | |
| RNA 0.83 0.89 0.86 238 | |
| cell_line 0.81 0.85 0.83 1050 | |
| cell_type 0.74 0.79 0.77 775 | |
| protein 0.88 0.90 0.89 6196 | |
| micro avg 0.84 0.87 0.86 10753 | |
| macro avg 0.81 0.86 0.83 10753 | |
| weighted avg 0.84 0.87 0.86 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.78 0.84 0.81 2494 | |
| RNA 0.83 0.87 0.85 238 | |
| cell_line 0.81 0.85 0.83 1050 | |
| cell_type 0.75 0.78 0.76 775 | |
| protein 0.88 0.90 0.89 6196 | |
| micro avg 0.84 0.87 0.86 10753 | |
| macro avg 0.81 0.85 0.83 10753 | |
| weighted avg 0.84 0.87 0.86 10753 | |
| Classification Report: | |
| precision recall f1-score support | |
| DNA 0.74 0.79 0.76 2210 | |
| RNA 0.73 0.76 0.75 287 | |
| cell_line 0.50 0.76 0.61 1057 | |
| cell_type 0.75 0.68 0.71 2761 | |
| protein 0.72 0.87 0.79 10082 | |
| micro avg 0.71 0.82 0.76 16397 | |
| macro avg 0.69 0.77 0.72 16397 | |
| weighted avg 0.72 0.82 0.76 16397 | |
| Test Set Results: {'eval_loss': 0.25901132822036743, 'eval_f1': 0.7609269081317186, 'eval_precision': 0.7112407211028632, 'eval_recall': 0.8180764774044033, 'eval_accuracy': 0.9229162898531661, 'eval_runtime': 8.311, 'eval_samples_per_second': 463.961, 'eval_steps_per_second': 57.995, 'epoch': 9.971126082771896} | |