file upload

2023-04-07T11-47-13-project.yaml

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+model:
+ learning_rate: 0.0003
+ target: celle_main.CELLE_trainer
+ params:
+ ckpt_path: logs/2023-03-02T14-28-43_HPA_celle_ESM2_640/checkpoints/epoch=000013.ckpt
+ condition_model_path: logs/2022-11-07T17-17-51_OpenCell_nucleus_vqgan_finetune/checkpoints/epoch=000468.ckpt
+ condition_config_path: logs/2022-11-07T17-17-51_OpenCell_nucleus_vqgan_finetune/configs/2023-02-23T19-14-01-project.yaml
+ vqgan_model_path: logs/2023-02-13T11-37-10_OpenCell_threshold_vqgan_finetune/checkpoints/last.ckpt
+ vqgan_config_path: logs/2023-02-13T11-37-10_OpenCell_threshold_vqgan_finetune/configs/2023-02-13T11-37-10-project.yaml
+ image_key: threshold
+ num_images: 2
+ dim: 640
+ num_text_tokens: 33
+ text_seq_len: 1000
+ depth: 55
+ heads: 16
+ dim_head: 64
+ attn_dropout: 0.1
+ ff_dropout: 0.1
+ attn_types: full
+ rotary_emb: true
+ fixed_embedding: true
+ monitor: val/loss_epoch
+ text_embedding: esm2
+ loss_img_weight: 1
+ loss_cond_weight: 1
+data:
+ target: celle_main.CellDataModule
+ params:
+ data_csv: /home/emaad/CELL-E_2/data/OpenCell/train_test_split_HPA_50.csv
+ dataset: OpenCell
+ sequence_mode: embedding
+ vocab: esm2
+ threshold: median
+ text_seq_len: 1000
+ crop_size: 256
+ resize: 600
+ batch_size: 1
+ num_workers: 8

epoch=000002.ckpt

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