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  # CELL-E 2
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  ## Model description
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- [![CELL-E_2](images/architecture.png)](https://github.com/BoHuangLab/CELL-E_2)
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  CELL-E 2 is the second iteration of the original [CELL-E](https://www.biorxiv.org/content/10.1101/2022.05.27.493774v1) model which utilizes an amino acid sequence and nucleus image to make predictions of subcellular protein localization with respect to the nucleus.
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  - [Image Prediction](https://huggingface.co/spaces/HuangLab/CELL-E_2-Image_Prediction)
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  - [Sequence Prediction](https://huggingface.co/spaces/HuangLab/CELL-E_2-Sequence_Prediction)
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-
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  ## Model variations
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  We have made several versions of CELL-E 2 available. The naming scheme follows the structure ```training set_hidden size``` where the hidden size is set to the embedding dimension of the pretrained ESM-2 model.
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  | [`HPA_1280`](https://huggingface.co/HuangLab/CELL-E_2_HPA_Finetuned_1280) | 10.8 GB | |
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  | [`HPA_2560`](https://huggingface.co/HuangLab/CELL-E_2_HPA_Finetuned_2560) | 17.5 GB | |
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  ### How to use
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  ### BibTeX entry and citation info
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  ```bibtex
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- @article{,
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- author = {Emaad Khwaja and
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- Yun S Song and
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- Aaron Agarunov and
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- Bo Huang},
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- title = {{CELL-E 2:} Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transforme},
 
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  }
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  ```
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  # CELL-E 2
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  ## Model description
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+ [![CELL-E_2](images/architecture.png)](https://bohuanglab.github.io/CELL-E_2/)
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  CELL-E 2 is the second iteration of the original [CELL-E](https://www.biorxiv.org/content/10.1101/2022.05.27.493774v1) model which utilizes an amino acid sequence and nucleus image to make predictions of subcellular protein localization with respect to the nucleus.
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  - [Image Prediction](https://huggingface.co/spaces/HuangLab/CELL-E_2-Image_Prediction)
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  - [Sequence Prediction](https://huggingface.co/spaces/HuangLab/CELL-E_2-Sequence_Prediction)
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+
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  ## Model variations
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  We have made several versions of CELL-E 2 available. The naming scheme follows the structure ```training set_hidden size``` where the hidden size is set to the embedding dimension of the pretrained ESM-2 model.
 
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  | [`HPA_1280`](https://huggingface.co/HuangLab/CELL-E_2_HPA_Finetuned_1280) | 10.8 GB | |
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  | [`HPA_2560`](https://huggingface.co/HuangLab/CELL-E_2_HPA_Finetuned_2560) | 17.5 GB | |
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+ To reduce download size, we removed the ESM-2 model from the checkpoint. This should be downloaded the first time the code is run, but is otherwise something to be aware of if loading into other projects.
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  ### How to use
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  ### BibTeX entry and citation info
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  ```bibtex
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+ @inproceedings{
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+ anonymous2023translating,
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+ title={CELL-E 2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer},
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+ author={Emaad Khwaja, Yun S. Song, Aaron Agarunov, and Bo Huang},
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+ booktitle={Thirty-seventh Conference on Neural Information Processing Systems},
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+ year={2023},
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+ url={https://openreview.net/forum?id=YSMLVffl5u}
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  }
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  ```
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