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model:
learning_rate: 0.0003
target: celle_main.CELLE_trainer
params:
ckpt_path: null
condition_model_path: logs/2022-09-23T23-59-09_HPA_nucleus_vqgan/checkpoints/epoch=000108.ckpt
condition_config_path: logs/2022-09-23T23-59-09_HPA_nucleus_vqgan/configs/2022-09-23T23-59-09-project.yaml
vqgan_model_path: logs/2022-09-28T15-37-57_HPA_threshold_vqgan/checkpoints/last.ckpt
vqgan_config_path: logs/2022-09-28T15-37-57_HPA_threshold_vqgan/configs/2022-11-07T17-12-07-project.yaml
image_key: threshold
num_images: 2
dim: 2560
num_text_tokens: 33
text_seq_len: 1000
depth: 5
heads: 16
dim_head: 64
attn_dropout: 0.1
ff_dropout: 0.1
attn_types: full
rotary_emb: true
fixed_embedding: true
monitor: val/loss_epoch
text_embedding: esm2
loss_img_weight: 1
loss_cond_weight: 1
data:
target: celle_main.CellDataModule
params:
data_csv: /home/emaad/CELL-E_2/data/HPA/train_test_split_50_pct_cluster.csv
dataset: HPA
sequence_mode: embedding
vocab: esm2
threshold: median
text_seq_len: 1000
crop_size: 256
resize: 600
batch_size: 1
num_workers: 8
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