Amelie-eHealthAI
commited on
Commit
•
6a27349
1
Parent(s):
eac2d75
Update README.md
Browse files
README.md
CHANGED
@@ -25,64 +25,10 @@ Synthetic Cases Dataset - Microbiome-based therapeutics
|
|
25 |
|
26 |
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/HWkFyGbgD36QNI2-YZZVz.png)
|
27 |
|
28 |
-
|
29 |
|
30 |
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/SnN6_1eaVB4kILJl7Gb5o.png)
|
31 |
|
32 |
|
33 |
-
# DEMO
|
34 |
-
|
35 |
-
Input: Patient Description
|
36 |
-
|
37 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/LSkgax0jNVeqggejFSSkr.png)
|
38 |
-
|
39 |
-
|
40 |
-
|
41 |
-
## Extracting patient description and planning searches
|
42 |
-
|
43 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/xWoM7uS0Yt6rCk6L9w6Wz.png)
|
44 |
-
|
45 |
-
|
46 |
-
|
47 |
-
## Teach AI to extract structured patient information
|
48 |
-
Prefilled with TrialMatchLLM extracted content, the expert user can adjust if needed:
|
49 |
-
|
50 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/PTNMHBPiEDkP62vxHJ9tT.png)
|
51 |
-
|
52 |
-
|
53 |
-
|
54 |
-
## Planning and running eligibility check
|
55 |
-
|
56 |
-
TrialMatchLLM runs online searches using permutation of parameters from the patient description, from the most precise to expanded searches.
|
57 |
-
|
58 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/p4tCN7K1iE4BKAABy9C-s.png)
|
59 |
-
|
60 |
-
Hold your mouse over the icons to see the description
|
61 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/l39oMpOsRZ2y8EkGGuVTs.png)
|
62 |
-
|
63 |
-
## Classified Trials
|
64 |
-
|
65 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/vZZL-v03j1wny7PlFnwt5.png)
|
66 |
-
|
67 |
-
## Explanations to non-experts
|
68 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/C57TxBJKLN8p9sTvJ98H5.png)
|
69 |
-
|
70 |
-
|
71 |
-
## Break down of AI thoughts and Obervations
|
72 |
-
|
73 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/BYR8qhE_zywvn4afwbNyg.png)
|
74 |
-
|
75 |
-
## Teach AI to make it perform better for you // Reinforcement Learning
|
76 |
-
|
77 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/OQZDkPiWVZkR1pXNjZT_Y.png)
|
78 |
-
|
79 |
-
## Teach AI to simplify Trial Eligibility Assessment // Reinforcement Learning
|
80 |
-
|
81 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/zBZ1oFOkVYWD1ay0Aqpw6.png)
|
82 |
-
|
83 |
-
## Annotated Eligiblity Criteria
|
84 |
-
Participan groups identifications, and inclusion/exclusion
|
85 |
-
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/Zltj6IXMi-m2pkHcypRdl.png)
|
86 |
-
|
87 |
# Finetuning
|
88 |
template used for fine-tuning: https://colab.research.google.com/drive/1D6OsKMp2zI9b2EWb_dfH-3clEVo7A5QK?usp=sharing#scrollTo=ZYLl8EJmTRL2
|
|
|
25 |
|
26 |
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/HWkFyGbgD36QNI2-YZZVz.png)
|
27 |
|
28 |
+
-----
|
29 |
|
30 |
![image/png](https://cdn-uploads.huggingface.co/production/uploads/6569e9d4d9f52520c827a0b4/SnN6_1eaVB4kILJl7Gb5o.png)
|
31 |
|
32 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
33 |
# Finetuning
|
34 |
template used for fine-tuning: https://colab.research.google.com/drive/1D6OsKMp2zI9b2EWb_dfH-3clEVo7A5QK?usp=sharing#scrollTo=ZYLl8EJmTRL2
|