errata

Dockerfile

@@ -88,7 +88,7 @@ RUN echo "conda activate ${ENV_PREFIX}" >> ${HOME}/rstudio/.bashrc
 # Define an array of environment variable names from the ENV_VARS Compose variable
 
 RUN echo "---> Setup variables"
-IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"
+RUN IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"
 
 RUN echo "ENV_VAR_NAMES=${ENV_VAR_NAMES[@]}"
 

docker/entrypoint-rstudio.sh

@@ -1,36 +1,36 @@
 #!/bin/bash --login
 set -e
 
-uid=$(id -u)
-gid=$(id -g)
+#uid=$(id -u)
+#gid=$(id -g)
 
 
-echo "uid $uid gid $gid "
-echo "$(id )"
+#echo "uid $uid gid $gid "
+#echo "$(id )"
 
-echo "--> Setup miniconda3"
+#echo "--> Setup miniconda3"
 
-echo ". ${HOME}miniconda3/etc/profile.d/conda.sh" >> ${HOME}/rstudio/.bashrc
+#echo ". ${HOME}miniconda3/etc/profile.d/conda.sh" >> ${HOME}/rstudio/.bashrc
 
-echo "--> Conda activate"
+##echo "--> Conda activate"
 
 # Make bash automatically activate the conda environment
-echo "conda activate ${ENV_PREFIX}" >> ${HOME}/rstudio/.bashrc
+##echo "conda activate ${ENV_PREFIX}" >> ${HOME}/rstudio/.bashrc
 #echo "export WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.bashrc
 # echo "WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.Renviron
 
 # Define an array of environment variable names from the ENV_VARS Compose variable
 
-echo "---> Setup variables"
-IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"
+##echo "---> Setup variables"
+##IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"
 
-echo "ENV_VAR_NAMES=${ENV_VAR_NAMES[@]}"
+##echo "ENV_VAR_NAMES=${ENV_VAR_NAMES[@]}"
 
 # Loop through the array of environment variable names and set the variables
-for ENV_VAR_NAME in "${ENV_VAR_NAMES[@]}"; do
-  ENV_VAR_VALUE="${!ENV_VAR_NAME:-default}"
-  echo "$ENV_VAR_NAME=$ENV_VAR_VALUE" >> ${HOME}/rstudio/.Renviron
-done
+##for ENV_VAR_NAME in "${ENV_VAR_NAMES[@]}"; do
+##  ENV_VAR_VALUE="${!ENV_VAR_NAME:-default}"
+##  echo "$ENV_VAR_NAME=$ENV_VAR_VALUE" >> ${HOME}/rstudio/.Renviron
+##done
 
 #echo "---> Ensure ulimit"
 #ulimit -s 16384