Upload app.py

app.py

@@ -223,39 +223,28 @@ with tab2:
             # st.pyplot(plt.gcf())  
         ######
         
-        col1,col2= st.columns([1,1])
+        #col1,col2= st.columns([1,1])
         #fig_szx=2*len(st.session_state['cell_type'])
         #fig_szy=100*len(multi_genes)
-        with col1:
-            fig11, axx11 = plt.subplots(figsize=(5, 5))
-            #sc.pl.umap(st.session_state['adata_annot'], color='new_anno', title='', legend_loc='on data',legend_fontsize='8', frameon=False,show=False, ax=axx11)
-            axx11=sc.pl.dotplot(st.session_state['adata_annot'], multi_genes,'new_anno',size_title='Fraction of\n Expressing Cells',colorbar_title='Mean\nExpression',cmap='BuPu',swap_axes=True,show=False,vmax=5)
-            #st.pyplot(fig11)      
-            #st.pyplot(plt.gcf().set_size_inches(fig_szx, fig_szy))  
-            st.pyplot(plt.gcf())  
-        with col2:
-            fig12, axx12 = plt.subplots(figsize=(5, 5))
-            
-            #sc.pl.umap(st.session_state['adata_annot'], color='new_anno', title='', legend_loc='on data', frameon=False,show=False, ax=axx2)
-            #sc.pl.umap(st.session_state['adata_annot'], color=selected_gene, title=selected_gene, legend_loc='best', frameon=False,show=False,legend_fontsize='xx-small', ax=axx12)#,vmax='p99')
-            axx12=sc.pl.heatmap(st.session_state['adata_annot'], multi_genes, groupby='new_anno', vmin=-1, vmax=1, cmap='BuPu', dendrogram=True, swap_axes=True, show_gene_labels=True,var_group_rotation=45)#,ax=ax2)
-            plt.xticks(rotation = 45)
-            #plt.xticks(rotation = 45)
-            #st.pyplot(fig12)      
-            #st.pyplot(plt.gcf().set_size_inches(fig_szx, fig_szy))    
-            st.pyplot(plt.gcf())   
-            
-        fign, axxn = plt.subplots(figsize=(5, 5))
+        #with col1:
+        fig11, axx11 = plt.subplots(figsize=(5, 5))
+        #sc.pl.umap(st.session_state['adata_annot'], color='new_anno', title='', legend_loc='on data',legend_fontsize='8', frameon=False,show=False, ax=axx11)
+        axx11=sc.pl.dotplot(st.session_state['adata_annot'], multi_genes,'new_anno',size_title='Fraction of\n Expressing Cells',colorbar_title='Mean\nExpression',cmap='BuPu',swap_axes=True,show=False,vmax=5)
+        #st.pyplot(fig11)      
+        #st.pyplot(plt.gcf().set_size_inches(fig_szx, fig_szy))  
+        st.pyplot(plt.gcf())  
+#        with col2:
+        fig12, axx12 = plt.subplots(figsize=(5, 5))
         
         #sc.pl.umap(st.session_state['adata_annot'], color='new_anno', title='', legend_loc='on data', frameon=False,show=False, ax=axx2)
         #sc.pl.umap(st.session_state['adata_annot'], color=selected_gene, title=selected_gene, legend_loc='best', frameon=False,show=False,legend_fontsize='xx-small', ax=axx12)#,vmax='p99')
-        axxn=sc.pl.heatmap(st.session_state['adata_annot'], multi_genes, groupby='new_anno', vmin=-1, vmax=1, cmap='BuPu', dendrogram=True,swap_axes=True, show_gene_labels=True,var_group_rotation="45")#,ax=ax2)
+        axx12=sc.pl.heatmap(st.session_state['adata_annot'], multi_genes, groupby='new_anno', vmin=-1, vmax=1, cmap='BuPu', dendrogram=True, swap_axes=True, show_gene_labels=True,var_group_rotation=45)#,ax=ax2)
         plt.xticks(rotation = 45)
         #plt.xticks(rotation = 45)
         #st.pyplot(fig12)      
         #st.pyplot(plt.gcf().set_size_inches(fig_szx, fig_szy))    
         st.pyplot(plt.gcf())   
-        
+            
         #######
         
         #multi_genes=['WNT3', 'VPS13C', 'VAMP4', 'UBTF', 'UBAP2', 'TMEM175', 'TMEM163', 'SYT17', 'STK39', 'SPPL2B', 'SIPA1L2', 'SH3GL2', 'SCARB2', 'SCAF11', 'RPS6KL1', 'RPS12', 'RIT2', 'RIMS1', 'RETREG3', 'PMVK', 'PAM', 'NOD2', 'MIPOL1', 'MEX3C', 'MED12L', 'MCCC1', 'MBNL2', 'MAPT', 'LRRK2', 'KRTCAP2', 'KCNS3', 'KCNIP3', 'ITGA8', 'IP6K2', 'GPNMB', 'GCH1', 'GBA', 'FYN', 'FCGR2A', 'FBRSL1', 'FAM49B', 'FAM171A2', 'ELOVL7', 'DYRK1A', 'DNAH17', 'DLG2', 'CTSB', 'CRLS1', 'CRHR1', 'CLCN3', 'CHRNB1', 'CAMK2D', 'CAB39L', 'BRIP1', 'BIN3', 'ASXL3', 'SNCA']