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INSTRUCTIONS.md
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@@ -12,7 +12,7 @@ Application compares the target sequences with the average embedding of the refe
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Upload a CSV file with the target sequences. CSV file must have ``accession_id`` and ``sequence`` columns.
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See [the example target file](https://huggingface.co/spaces/smtnkc/cov-snn-app/resolve/main/
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##### 3. Get output
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**Note:** All ranks are in descending order, with the default sorting metric being `rank_scgra`.
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See [the output](https://huggingface.co/spaces/smtnkc/cov-snn-app/resolve/main/
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### The Ranking Mechanism
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Upload a CSV file with the target sequences. CSV file must have ``accession_id`` and ``sequence`` columns.
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See [the example target file](https://huggingface.co/spaces/smtnkc/cov-snn-app/resolve/main/target_eris_omicron.csv) which includes 10 Omicron (``EPI_ISL_177...``) and 10 Eris (``EPI_ISL_189...``) sequences. It is important to note that the selected Omicron sequences are currently circulating and are not included in the training dataset.
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##### 3. Get output
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**Note:** All ranks are in descending order, with the default sorting metric being `rank_scgra`.
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See [the output](https://huggingface.co/spaces/smtnkc/cov-snn-app/resolve/main/output_eris_omicron.csv) for [the example target file](https://huggingface.co/spaces/smtnkc/cov-snn-app/resolve/main/target_eris_omicron.csv).
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### The Ranking Mechanism
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output_eris_delta.csv → output_eris_omicron.csv
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target_eris_delta.csv → target_eris_omicron.csv
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