Spaces:
Running
Running
wzkariampuzha
commited on
Commit
·
388fbdd
1
Parent(s):
bc29af4
Update app.py
Browse files
app.py
CHANGED
@@ -13,17 +13,16 @@ st.title("Epidemiology Extraction Pipeline for Rare Diseases")
|
|
13 |
st.subheader("National Center for Advancing Translational Sciences (NIH/NCATS)")
|
14 |
|
15 |
|
16 |
-
|
17 |
#### CHANGE SIDEBAR WIDTH ###
|
18 |
st.markdown(
|
19 |
"""
|
20 |
<style>
|
21 |
[data-testid="stSidebar"][aria-expanded="true"] > div:first-child {
|
22 |
-
width:
|
23 |
}
|
24 |
[data-testid="stSidebar"][aria-expanded="false"] > div:first-child {
|
25 |
-
width:
|
26 |
-
margin-left: -
|
27 |
}
|
28 |
</style>
|
29 |
""",
|
@@ -37,11 +36,17 @@ filtering = st.sidebar.radio("What type of filtering would you like?",('Strict',
|
|
37 |
|
38 |
extract_diseases = st.sidebar.checkbox("Extract Rare Diseases", value=False)
|
39 |
|
40 |
-
|
41 |
-
|
42 |
-
NER_pipeline, entity_classes
|
43 |
-
|
44 |
-
st.
|
|
|
|
|
|
|
|
|
|
|
|
|
45 |
|
46 |
disease_or_gard_id = st.text_input("Input a rare disease term or GARD ID.", value="Fellman syndrome")
|
47 |
|
|
|
13 |
st.subheader("National Center for Advancing Translational Sciences (NIH/NCATS)")
|
14 |
|
15 |
|
|
|
16 |
#### CHANGE SIDEBAR WIDTH ###
|
17 |
st.markdown(
|
18 |
"""
|
19 |
<style>
|
20 |
[data-testid="stSidebar"][aria-expanded="true"] > div:first-child {
|
21 |
+
width: 275px;
|
22 |
}
|
23 |
[data-testid="stSidebar"][aria-expanded="false"] > div:first-child {
|
24 |
+
width: 275px;
|
25 |
+
margin-left: -400px;
|
26 |
}
|
27 |
</style>
|
28 |
""",
|
|
|
36 |
|
37 |
extract_diseases = st.sidebar.checkbox("Extract Rare Diseases", value=False)
|
38 |
|
39 |
+
@st.cache(suppress_st_warning=True)
|
40 |
+
def load_models():
|
41 |
+
global classify_model_vars, NER_pipeline, entity_classes, GARD_dict, max_length
|
42 |
+
|
43 |
+
with st.spinner('Loading Epidemiology Models and Dependencies...'):
|
44 |
+
classify_model_vars = classify_abs.init_classify_model()
|
45 |
+
NER_pipeline, entity_classes = extract_abs.init_NER_pipeline()
|
46 |
+
GARD_dict, max_length = extract_abs.load_GARD_diseases()
|
47 |
+
st.success('All Models and Dependencies Loaded!')
|
48 |
+
|
49 |
+
load_models()
|
50 |
|
51 |
disease_or_gard_id = st.text_input("Input a rare disease term or GARD ID.", value="Fellman syndrome")
|
52 |
|